Os04g0284600

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Revision as of 11:02, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0284600| Description = Similar to TAT-binding protein 1 (Fragment)| Version = NM_001058909.1 GI:115457547 GeneID:4335380| Length = 6167 bp|...")
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Gene Name

Os04g0284600

Description

Similar to TAT-binding protein 1 (Fragment)

Version

NM_001058909.1 GI:115457547 GeneID:4335380

Length

6167 bp

Definition

Oryza sativa Japonica Group Os04g0284600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:12300666..12306832

Sequence Coding Region

12300951..12301007,12301686..12301826,12301939..12302058,12302940..12303018,12303522..12303640
,12303953..12304144,12304383..12304502,12305767..12305838,12306382..12306471
,12306627..12306710

Expression

GEO Profiles:Os04g0284600

Genome Context

<gbrowseImage1> name=NC_008397:12300666..12306832 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:12300666..12306832 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccttcctccgccgcagccgccgccgacggcggcgacatcgaggaggtggaccgcctcaagaagaggatcaggaccctcgagatggaggagacgaagttgaaccagcatatggaacgcgtcatccagggaatcgaagcgaacgaggcgtacctcgtcggcatggtcctcaggattatggaaaagggcccagaggatgagactgctgaggatgattgtgatgttggctttcatttgcagcgaaaaattatattccgtcctattgctggggtagtgtaccctagcaaacttaagcctggagatttaattggtgttgacagtacatcaaatgaacactactgtggcattggtggtctcgaaaaacaaattgaggagcttgtggaagcagttgtgttgccaataatccacaagaactgcttccagaggttgggaattcaccctccaaaaggtgtacttctgtatggaccacctggaactgggaagacactcgttgcccatgcatttgcttcccagacaaatgcaacatttcttaagctaactggtccacaacttgccgtgaagcttattggtgagggagcaagacttgttcgtgatgcctttcagcttgctaaagagaaagccccatgcattattttcattgatgaaattgatgcaattggaagcaagcactttgatagtggtgatagggaagtgcaacaaacaattgtggagcttcttaatcagttggatggcgtcgggagctatgagagtataaaggtaatagctgcaactaatcggccagaagttcttgatcctgcttttctgcgatctggccgtttagatcaaaagattgaattccctcatccatctgaacaggctagagttagaattctggagatccactcccgaaaaatggacaaaaaccctgatgtaaactttgaagagttggcttgctgtacagatgattttaatggtgcacagctaaaggctgtatgctttgaggctagcatgctggcatttcaccgagatgctacagaggttcggcatgaggactttgtcagagcaattgcgcaagtaaaagacgggaattactga</cdnaseq>

Protein Sequence

<aaseq>MPSSAAAAADGGDIEEVDRLKKRIRTLEMEETKLNQHMERVIQG IEANEAYLVGMVLRIMEKGPEDETAEDDCDVGFHLQRKIIFRPIAGVVYPSKLKPGDL IGVDSTSNEHYCGIGGLEKQIEELVEAVVLPIIHKNCFQRLGIHPPKGVLLYGPPGTG KTLVAHAFASQTNATFLKLTGPQLAVKLIGEGARLVRDAFQLAKEKAPCIIFIDEIDA IGSKHFDSGDREVQQTIVELLNQLDGVGSYESIKVIAATNRPEVLDPAFLRSGRLDQK IEFPHPSEQARVRILEIHSRKMDKNPDVNFEELACCTDDFNGAQLKAVCFEASMLAFH RDATEVRHEDFVRAIAQVKDGNY</aaseq>

Gene Sequence

<dnaseqindica>5826..5882#5007..5147#4775..4894#3815..3893#3193..3311#2689..2880#2331..2450#995..1066#362..451#123..206#gcccagttcaaaaaagaacaaaaatcgccattagctggctgctagtggagtatttctgggcggggcgctctcttcccttccccccgcgcctccacttccgcctccgcctcgcgccaccgaccatgccttcctccgccgcagccgccgccgacggcggcgacatcgaggaggtggaccgcctcaagaagaggatcaggaccctcgaggtgagaacccgcgtcgctcggtccgggtcggttcttgcagccgccattggtcgatcgatcgatcggttcttcttggtttctcgctgggggggtttcacctccgatggtgtggggttggtttgtttatttgcttgcttgcttgcttgattctccagatggaggagacgaagttgaaccagcatatggaacgcgtcatccagggaatcgaagcgaacgaggcgtacctcgtcggcatggtcctcagggtaagcgcccacatccacctgcatttgggggggttttagggttgatgctcgagattcttgctcggtcggggtttgggttctagagtaattgattaatctgtgcgccattgtcctcaccattgttctgaaaatcgcgctgccggtccatgaaatgtgtggggggttcttatatgcagttatgctacgttatagccaattgcatgttatgatgttatgacatttgatttggttctaaattgtatgatcatgagcgatattcgggcgtgttgtcacatttttcaactgcgtgttattgaggattcagggggtgaatgagttatctacatttccaattggcctattctggagttctgaatttggattaggttctaaattgtacaatgtgatcgaattgcaaacatccagcgatgaataacttattacacttgcagcgaaaagaagtaggccttttattgagaagatgtaattgtagtttggggggcattttggatgctatgtacatctgtgtataagtgtgtggttaattgctcattccatttctagattatggaaaagggcccagaggatgagactgctgaggatgattgtgatgttggctttcatttgcagcgaaaagtaagaaaccaacttgatctatttctcttttctaatctctaaatattgcacaagtgcagcattgtacgtatggcttcattctaagttttacccattcctgccttctcttttagatgacgacttgaaatgttgattttgtactcaaataggggagttttcggttttctacctaaagctttatcaaattacccctattaaaagcaattcattagtaccttttggccatagatgtggtgtttgcttggattgctagtcatagtccttttttattcctttagccagcccttgtgtactaaaccttgccctaatgggcttctttgagtcttcttagactcttttcctttatataatgatgcgcggctctcctgcccgtttgagagagagagagagagagcaatccattactcaaactcaactctgctgttcctagctatccctaattgcatatgaatgtttccacgtggcagcactacttgcattgattgaggtagattgaaatttgtgctaccctgggcctgcttggtctcttggcatttcaatgattggaacattaattactctagtaaggggcaaagctgtcaatttcttagctgtaaagagatgtctttgtcttcaggcgttgaggccagaacttcatccttttccaaacggaggcagtatatacataatatatcagaactgtgtcatttgtaacatcaacagggttgcagtgatatcttctgttccacagatgataacctctcttttcagacaatagcaaactctctgcctttcactaattcagcatgtctctactgctagactaaaacaagcttgattaagttttcaaaagttaaaagtacgcttctggtattccacattttgaactgtgcatgtgtacggaacatactcaatgtgttttgctaatatttgtggtcgtgactcattcgcaatgtaattatgtttgcaagcgaagaattaaaccaatcctacgttcctattgcctgtgagctcggttatgaatattgctcggatatgttcaatcctgactggcatgtcgaatcaacagtggagttctttcctttgcaatatgcacatgcatcaacaggagcctaaatttgctgcaataactataccacccatagataaatatgaacttatgcacaggggacattcttgaggcaatgagctcactcgatttcattttctgtagtcaatcatctatgttctaaacttattctgatatatatattttttcttttgtttccttttcttgcaatgacagattatattccgtcctattgctggggtagtgtaccctagcaaacttaagcctggagatttaattggtgttgacagtacatcaaatgaacactactgtggcattggtggtctcgaaaaacaagtaagttacaactctttctacttttccctgcttaagaatggtaataataacagtggacatagtttattattgtactgaatagcaacattgtttgcactccttcatttattattgtactgaatagcgttttgtttacttgttaatttattattgtactgaatagcgttttgtttacttgttaatttataccaccccatctcctataagtaataaactgttttgtaaatttcatattcagattgaggagcttgtggaagcagttgtgttgccaataatccacaagaactgcttccagaggttgggaattcaccctccaaaaggtgtacttctgtatggaccacctggaactgggaagacactcgttgcccatgcatttgcttcccagacaaatgcaacatttcttaagctaactggtccacaacttgccgtggtaattatcttgcaacagaaaatccatcacctaactgtcagtaaaatattgttgtgctattcatgaaatcaggtgtgcgtatattctgtatctttctcatgttccatctttatgcattggtcagtgaatttgggaaaaccaatcaaagtatttgatagatacatgaaatgcgtaaaggcattgaacagcagagtttttcatgatccttcgatatctttgagctcctctgaaaagtttcttagtgctacatgatttgcctttttttttatgtacgattgagattaatactggtttctttgtggactcgtgcagaagcttattggtgagggagcaagacttgttcgtgatgcctttcagcttgctaaagagaaagccccatgcattattttcattgatgaaattgatgcaattggaagcaagcactttgataggtatgacaaacatggtcgttccttcatcatttcccacttttgaatatgtgaacaaatacactaggtcttttctgttaatttctttccagcaattgtttgtttcctacttgctgacatgttaaatacttgttaaatcatgtcctctttctaatcgtatattgcctttacctgcacccttagttgatatatcacttaatttagcatgtatactgcaagtttactttatgcaaatgattctaggttcttttccaatacaagtttttatgtctgcttaagacatttgaatttttagatcctcagaaatgtcaggaaggaagtttgaacttcatttctggcacaaagtcatgaaggctcctgttgagacttgtagtagaagtaactcgagtttataataggacctttagtacatttggcagttatggtgctctcaacaatatacaatgtatgttctgtttctgctaggtttgagtacttgcacttctgactagttgcacgccatgcagtggtgatagggaagtgcaacaaacaattgtggagcttcttaatcagttggatggcgtcgggagctatgagagtataaaggtaaatgttttaataaccacaagctcatgtgactttcgataaccacagatggagatttagcaatatgcaaactgcggcttgaaatatgtttagaagtgtgttttttttttcatatctctttattcttctgtgtatggaactattgtattaaatcatttggtgtgtgtgcatatcctggtacagagtacagagcccttcagatgtcttcctgttccactttattttttttatattcacgtatgtactgatacagggcatttgggctgtgggatattagtggtgttgggataggaaggattaggttgaaatgagaagaggagaatgaatgactaggacgaaaagctggctttttgtgagtgattttttttccttttccgactacccaaacaggcctgtagtgttaagatgcagtaatctcttcttttattcgcaaacagcaaatggtaccagcatggactcgaaatttcttagaacttgtgaataactttaggtgaccataagcagtgaatccctctctttttttttttttttggaagggagcgaagcccatttgttctgtgcaatattgatcactggatgaaagctacaataaataccatgaaaaagataatatcaagacatcctcattcatattagccttttagttatcctaatggatattcctaaggacctgttcttgcatttttgttgattgtcttcagcttcttataacttcaaacataagctttgttccttatcgcttgtctatctaacgaacacatgtttcctacatgctttatgacattcactaaaatatgatttctgttaatactttacttctgtttcttgctggtattttttaaaaaagtaatgacatgatgaactctttggctgactaacaggtaatagctgcaactaatcggccagaagttcttgatcctgcttttctgcgatctggccgtttagatcaaaagattgaattccctcatccatctgaacaggctagagttagaattctggaggcaagctaccttgaacaccttttttttccctcctttacttgcttagttgttgaaaagatatctagctttgcacacataacctaaatgtcttgctctgtatgattatttgtagatccactcccgaaaaatggacaaaaaccctgatgtaaactttgaagagttggcttgctgtacagatgattttaatggtgcacagctaaaggctgtatgctttgaggctagcatgctggcatttcaccgagatgctacagaggtttcttctgtctcttatttattgttagctgcattatcatttctttagcggttcttcttttagacaaagcaagcagttttctttctgctgcaataattcacagttggttactgcagccatgttcatctgtttcagaactattatatacttcctcttcgtgataatatagtggtgtggttattcatcatgcaaactgcaaagcattcccgaataatttacagaggaatacttcataattaaaaaaacaatatgtgagtagctaaaagaagttatccaactctgaaaggagaacacctaaaaacagagtaataaataacagcagcggtacagccacggagaatattgcatagcagaacatttttcttagtgaagttcatttactggatttatatttgcattgtaaattcaacttctagtacatataaacttactatccttttatcatgccctattagttttacagtttacacaactgttgacttaccgatttttccctgtccattctgcatgaaatgtattagcagaactagataaatgtaatgtttgtgagaatgttttataaatttgtcaaaatgtacgctgcacattctctcctattgtccttgtccatcattgtcttgtcttgttctgcgaaaagaaattacgttgttgcatcctatattgattttctccttgtaggttcggcatgaggactttgtcagagcaattgcgcaagtaaaagacgggaattactgaacaacagcttcaactactatgcatagaggacaccatctaacatcttaccttgtgtgcagttggttctgagaccagaccaagaagttactgtcacctaactcaaatttttaccatgtcttagatacgagagatcaagtatagtttgaaaacagtggtctgtatagtactgattagtaagttgagaaatatttgaggctcatagtaggaagctaatcagaaaaggcaacaattgtttttgataaccttgcaagatttgagtttttttgacaacagcatttgctgatc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0284600, RefSeq:Os04g0284600