Os04g0286300

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Revision as of 11:02, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0286300| Description = EGF-like calcium-binding domain containing protein| Version = NM_001058911.2 GI:297602370 GeneID:4335383| Length = 5...")
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Gene Name

Os04g0286300

Description

EGF-like calcium-binding domain containing protein

Version

NM_001058911.2 GI:297602370 GeneID:4335383

Length

5208 bp

Definition

Oryza sativa Japonica Group Os04g0286300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:12412568..12417775

Sequence Coding Region

12414843..12414918,12416132..12416284,12416360..12417600

Expression

GEO Profiles:Os04g0286300

Genome Context

<gbrowseImage1> name=NC_008397:12412568..12417775 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:12412568..12417775 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcttatgttggataccaagtgcaaatgcatggatggttttcatggaaatccatacgtcgttaatggttgtgaagatattgacgagtgcaagaaaacacctggcatctgcaaaggcatatgccacaatgacattgggagttaccattgcatggagtgcccagacaaaacagagtatgatgtgacagctatgcagtgtgtctcaagaaaaaaacaaaatcttctgataggtattgtaattggacttagtgttggattcaccgttctactctttgtattgggtgggatgcttcttcttcgtagatggaaaagggacattcaaagacaactacgaagaaattactttcgaaaaaatcaaggtcttctattagaacaactgatatcatctgacgaaaatgcgagcgacaagacaaaaattttctccttggaagagcttgaaaaggcgacaaataattttgaccccacacgtatcctcggacgtggagggcatggcatggtatacaaaggaatcttatctgatcaacgtgtggtagccataaaaaagtcaaagataattaagcaagatgaaattgataattttatcaatgaggttgccatcctctctcaaataaatcatcgtaatattgtaaggctttttggatgttgtcttgaaactgaggtcccactacttgtttatgactttattccaaatggttcattatttggaattctccatgctgatgcacgtagtagttttcggttatcttgggatgactgcttaagaattgccactgaggcagcaggagcactctgttatcttcattcagcagcttcagtatcagtctttcatcgtgatgtgaagtcagctaacatacttttagatgcaaactgcacagccaaagtttcagattttggtgcttcgagattggttcccattaatgaaacccatgttgttacaaatgtacaaggcacctttggctacttagatccagaatactaccacaccgggcaattgaatgagaaaagcgacgtctacagctttggagttgtacttattgagctactacttaggaaggaacctatttttacaagtgaaacaggtatgaagcaaaacttgtcgaactattttctttgggaaaaaaaggtgaagctaattagggatatagtggctgatcaagttcttgaggaagcaaccgaggaagaaattaacaatgttgcctctcttgcggaagattgcttgagtctacgacgggatgaaagacctactatgaagcaagttgagttggcactacagtttttgctaaacaaaaggttgaattcataccgcactgttgaagcaaacaaggaagagatggatccctttattatgacaaaagttcaacatagcactgagaattcaaatgttgaatttctgagcaataaagcaactatatcgtcctatcagcctggcttggagcacgagtttatgtcatctgccactataccacgctag</cdnaseq>

Protein Sequence

<aaseq>MLMLDTKCKCMDGFHGNPYVVNGCEDIDECKKTPGICKGICHND IGSYHCMECPDKTEYDVTAMQCVSRKKQNLLIGIVIGLSVGFTVLLFVLGGMLLLRRW KRDIQRQLRRNYFRKNQGLLLEQLISSDENASDKTKIFSLEELEKATNNFDPTRILGR GGHGMVYKGILSDQRVVAIKKSKIIKQDEIDNFINEVAILSQINHRNIVRLFGCCLET EVPLLVYDFIPNGSLFGILHADARSSFRLSWDDCLRIATEAAGALCYLHSAASVSVFH RDVKSANILLDANCTAKVSDFGASRLVPINETHVVTNVQGTFGYLDPEYYHTGQLNEK SDVYSFGVVLIELLLRKEPIFTSETGMKQNLSNYFLWEKKVKLIRDIVADQVLEEATE EEINNVASLAEDCLSLRRDERPTMKQVELALQFLLNKRLNSYRTVEANKEEMDPFIMT KVQHSTENSNVEFLSNKATISSYQPGLEHEFMSSATIPR</aaseq>

Gene Sequence

<dnaseqindica>2276..2351#3565..3717#3793..5033#aggatagtctgaccaccaacagaaaggaaaagaacatgaatctcctctgtgcaatagcaatactcccggtgattcttgtggccttactagatactataccgctggcaagtgcatcgtctctgatgaatcacagccagccatccatggcaacgctcgcgagctgccccaagagttgtgggcagatgagcatccactaccccttcggaatcggagcaggctgcttccgtcagcctgacttcaacctcatctgcgacaactccactcagcccccaaagctcctcttgcatgacggcgtaaccgagatcatcggggatacagattccagttttgacatggacgtgggctcaacggagtcaatcgatgtcaacatttcctccaccatccctatgctatctagcatctctcattacaactattcttggaatctcagttctttttctatcgaatatgttattctgaacattactgggtgcaacttcgacacatatatcattaaccccgacaccgatattcgcacaaggatctgcaggaacagttgccccaaggaagaaatcacagaagcagtggctcgacaaagctgtaatggtactggatgctgcacatatgatatttacggtgttgctaacttgcagctcagtttcgtccgtggggatgaaggtttacttggagggaactctagtcgaaactccttatggaacataatcaacataagaagctggtacgcctatgtcacgtggagcataatcgatcaaccgacatgtgctagtgcaaaggataaccgaacggattacgcatgtgtgagcgccaacagtacatgcatagacagcttcaattctatggaatatcttggctacctttgttattgcagcagtggtttcataggcaatccttacgtacttcatggatgcacacgtgacgaaggtgcttttttacatacacatgacaacttgcagttaatctgtttggtttgcaaagcttgcaaatttgatttctggtttattttctatgtatcccactacttattttttctgtctatcaactccaaagtactattttgtgataacttatctcgattctcaacggacaaaacagagcagtgtagccttaattttagtagctaccaaatcaatcatgtattatgagaacataatttggagtatgatgtagagggtcctctttaagaggaaatactaaactattttcccttttgatgcataagagtgatggttttattttccattttttttatcatatcgaaaatcttgtaatgaaaaatacacgatgtttcataatattgcacgtgcacatagattcttttacttggataatattatacatactaaatcttctagtattagacgacatgtgttagttgttttaaaattaatttcaacagtgtagcatcattaaaagattgtgcaggaaattaactcgcatcaattttacagaatgaataagatatttttagataaaattgtttacgtttccatctagagaacgaataggtgtcttcagttaatatgtaactttcatatatactagctttttaagttatcattaatggtataaaagatgtttgtttttagtaactatgaagattttgcttaggttctttgttctaaaaaataatttgagcaagcatgaaagtttattaatcgttgtagctaaaagtcaatagcattacatcaactatcattaattttgacatggatattgtactcctgagtcctgagaagcccttaatttggagctcaaattttcgttgtagtctactagcttatcctggcactgcaatagttcagtcatggtttacagtactaactactaaaaattactagtagtgaagttcataaactttgttcactgaaatcaggatattatccagttcaacaaaaggcaaactgctcccgacggtgtgggaatatcagtgttccatttccttttgggctagaggaaggctgcgctgcaagaaaactatttcaactcaattgcacaaatgtgacatcttctacactccaatttgaccgcggtcatgttgtgacagacatagattttgcagaaggggttgttggcatcaaacttgcctcatatttcgaagagcaggagttcagtatgtatagatcaggagaacctgacctatatgcaagttttggagaagcagtgatctctgtgcattgggctgctgctaatctaacatgtcaagaggcccagaagaaccactctcgatatgcatgtgtcagtgcaaacagcacatgtttaggtgtcgactctacttatgcttatgttggataccaagtgcaaatgcatggatggttttcatggaaatccatacgtcgttaatggttgtgaaggtatcccgctctcctttcccttgttttttcatcatccccaattgtttttcatccactcccaagagtatttggtctaagttacctttacatattctagtagtgtattttattaggggactgtctatagatcatttgacaaaaaccctcttagaaatcttgcaaattttagaccatccgattgctttaagattcgtgcaggcaaccaaaccctaaaacaccaccccctatcccgattcctcctcacgccgccgctctccctagcgcgagcgcgccaccctagcgcgcgccgcctccgccgcagccccagcgtgccgccgcccggctggccggaaggtgtgaacagcgccggcaaggcctcctggccggcctcctccccctccccctcccccctcgcctcccctcctcaggccatagaaggcgagatagatcgcccgccccattgtcttcctcatctccggtgactcctcgccgccggatccaccacagtcggccaccacaagacacaaactcgctatgcccccgccaccaacaccggccaaccgccctcctccatccccgcggctccggtgctgccgccgacgcctcgccgcccgcccgtttcgtcgcccaccgccgggccgccgcctcccacgaccatccctctaagcccggcgacctcccctttctccccaccatcccacccctcccaccccaccccaccccaggaccctaatccattggccttcgccggagtttgggttgttgccggcgccggagaagaagaggagttcgtcggagttagagaagaagcagctggagcacgaatcacgaagcacatctagtgaaccaaaatttgtaacatttggaggtaggttttatgtcgactgaagtttagcaattccgatttattaatggattgagttacacaatgcggagtgagatgcataatcctagaaaatagtgaggctcctcaaacctcgcatcaatttatgttgtggtaggcaaaggttaccgttttatttttctttttgcaacaagcaacaaactttttcttctctaaaattcgaaatgtagacaatctaatgggccaaagtttctcataattgttattgggagcaagactaccaatgataataccgtttgaattttactattatgaccatcacctctatgtttgtaattttattcacgtttcaaacatagcatttcaatttgatgaagttccttattgcagatattgacgagtgcaagaaaacacctggcatctgcaaaggcatatgccacaatgacattgggagttaccattgcatggagtgcccagacaaaacagagtatgatgtgacagctatgcagtgtgtctcaagaaaaaaacaaaatcttctgataggtatgttctcaatggttttccacttctcaaactacattaaaacaaaacactgattcggtgataaaatccttttaggtattgtaattggacttagtgttggattcaccgttctactctttgtattgggtgggatgcttcttcttcgtagatggaaaagggacattcaaagacaactacgaagaaattactttcgaaaaaatcaaggtcttctattagaacaactgatatcatctgacgaaaatgcgagcgacaagacaaaaattttctccttggaagagcttgaaaaggcgacaaataattttgaccccacacgtatcctcggacgtggagggcatggcatggtatacaaaggaatcttatctgatcaacgtgtggtagccataaaaaagtcaaagataattaagcaagatgaaattgataattttatcaatgaggttgccatcctctctcaaataaatcatcgtaatattgtaaggctttttggatgttgtcttgaaactgaggtcccactacttgtttatgactttattccaaatggttcattatttggaattctccatgctgatgcacgtagtagttttcggttatcttgggatgactgcttaagaattgccactgaggcagcaggagcactctgttatcttcattcagcagcttcagtatcagtctttcatcgtgatgtgaagtcagctaacatacttttagatgcaaactgcacagccaaagtttcagattttggtgcttcgagattggttcccattaatgaaacccatgttgttacaaatgtacaaggcacctttggctacttagatccagaatactaccacaccgggcaattgaatgagaaaagcgacgtctacagctttggagttgtacttattgagctactacttaggaaggaacctatttttacaagtgaaacaggtatgaagcaaaacttgtcgaactattttctttgggaaaaaaaggtgaagctaattagggatatagtggctgatcaagttcttgaggaagcaaccgaggaagaaattaacaatgttgcctctcttgcggaagattgcttgagtctacgacgggatgaaagacctactatgaagcaagttgagttggcactacagtttttgctaaacaaaaggttgaattcataccgcactgttgaagcaaacaaggaagagatggatccctttattatgacaaaagttcaacatagcactgagaattcaaatgttgaatttctgagcaataaagcaactatatcgtcctatcagcctggcttggagcacgagtttatgtcatctgccactataccacgctagaatttattcagtttccagttctgtgctaggccatgatgcctgttgtttctcttgacaatgtgagataatgtaccttcaatatactgcacgttttaatttgaagtacacttgtaataaggcaaaatactgtgtaaaaaattatttaattttataaagttattccggtggaatggac</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0286300, RefSeq:Os04g0286300