Os04g0307200

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Revision as of 11:03, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0307200| Description = Similar to Cysteine string protein (CCCS1)| Version = NM_001058956.1 GI:115457641 GeneID:4335435| Length = 6500 bp| ...")
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Gene Name

Os04g0307200

Description

Similar to Cysteine string protein (CCCS1)

Version

NM_001058956.1 GI:115457641 GeneID:4335435

Length

6500 bp

Definition

Oryza sativa Japonica Group Os04g0307200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:13884866..13891365

Sequence Coding Region

13885141..13885326,13885464..13885559,13886270..13886390,13886487..13886593,13886702..13886919
,13887972..13888149,13888245..13888364,13889354..13889440,13890154..13890264
,13890371..13891192

Expression

GEO Profiles:Os04g0307200

Genome Context

<gbrowseImage1> name=NC_008397:13884866..13891365 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:13884866..13891365 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcggcggaggagaacagctcgctgttcctcatattcatcctcaccatgatcgcgctccccctcgtgccctacaccatcatgcgcctctgccgcgccgccaacgtcaaggccaagaccatccactgccgctgctccggctgccaccgctccggcaagtaccgcaagtcgatctacaagaggatatccaacttctcgacatgcagtaacctcaccatcctgcttctctggatagttatgatcttccttgtatactacatcaagcatgttagccgcgaggtacaagtgtttgagccgtatagcattcttggactggaaccaggtgcatcagagtctgatatcaagaaatcataccgtagactttctatccaataccatcctgataaaaatcctgatcctgaggcccacaagtactttgttgaatttatatccaaggcatatcaggctttaactgatcctgtatctcgtgaaaactatgagaagtatggtcacccagatggacgccaggggatgcaaatgggcattgctttgcccaagttcttgttgaatatggatggtgcatctggtggaataatgcttcttggaatagtagggctatgcatactcttgcccttgatgatagcagttatttatttgtcaaggtcatcaaagtacaccggaaattatgtcatgcatcaaactctgtccacttattactacttcatgaagccttcactggctccaagcaaagtcatggatgtcttcattaaggctgcagagtatatggagatgccagtccggcgcagtgacgatgaacccttgcagaaattatttgtagctgttaggagtgaattaaatctagacttgaagaatattagaacagaacaagctaaattctggaagcagcatccatctctagtgaagatggagcttttgattcaggctcacctcactggagagtcatttgctttgacaccagcgttactgaaggattacaggcacatgcttgaacttgcacctcgtcttctggatgaacttgtcaagattgcactactaccaaggagtccccatggttttggatggctcaggcctgcaatcggtgtaattgagctttcccaaaatatcatccaggctgtccctctcagtgcacgaaaagctagcggaggcaactctgaaggaatagcacctttcttgcagctaccgcattttactgaaacggttgtcaaaaaaattgctcgcaagaaaatccgttcattccaagaattctgtgacatgcctgtggaggaacgcgccacgttgctgacacaggttgctgggctttctgatgaaggtgctcaagatgtagagcttgtgctggagatgattccttctattgaagtggatattaaatgtgagactgaaggcgaagaggggattcaagagggtgatgttgtgaccatgtatgcttgggtctcacttcaccgtcgcaatggcctaactgctgctcttccccatgctccttccttcccgttccacaaggaagagaacttctggttgcttctagcagatgctgcatcgaatgaagtttggttatcccagaaggtcagcttcatggatgagactaccgctataactgcagcatcaaaagctatacaagagacccaagaagcactaggtgcaagtgcaaaggaaatagggattgcgattagagaggcagtcgacagggtgaagaaaggcagtaggttggtaatgggcaagttccaagccccggccgagggcactcacaacctgacttccttctgtttgtgcgacgcatggataggatgtgacaccaagaccagcttgaagttgaaggtcctgaagcgcagccgggcaggaacaagaggtcatgtggctgaagaaggcccagtggcagaggatggtattgaggaagaagaagaggaggaagaagaggagtacgacgactacgagagcgagtacagcgatgacgaggaggatgagaagagcaaaggaaagggtaaggtcgcgaacggagtagcccaccaaaaggcaaactccgatatagattctggcagtgatgattga</cdnaseq>

Protein Sequence

<aaseq>MAAAEENSSLFLIFILTMIALPLVPYTIMRLCRAANVKAKTIHC RCSGCHRSGKYRKSIYKRISNFSTCSNLTILLLWIVMIFLVYYIKHVSREVQVFEPYS ILGLEPGASESDIKKSYRRLSIQYHPDKNPDPEAHKYFVEFISKAYQALTDPVSRENY EKYGHPDGRQGMQMGIALPKFLLNMDGASGGIMLLGIVGLCILLPLMIAVIYLSRSSK YTGNYVMHQTLSTYYYFMKPSLAPSKVMDVFIKAAEYMEMPVRRSDDEPLQKLFVAVR SELNLDLKNIRTEQAKFWKQHPSLVKMELLIQAHLTGESFALTPALLKDYRHMLELAP RLLDELVKIALLPRSPHGFGWLRPAIGVIELSQNIIQAVPLSARKASGGNSEGIAPFL QLPHFTETVVKKIARKKIRSFQEFCDMPVEERATLLTQVAGLSDEGAQDVELVLEMIP SIEVDIKCETEGEEGIQEGDVVTMYAWVSLHRRNGLTAALPHAPSFPFHKEENFWLLL ADAASNEVWLSQKVSFMDETTAITAASKAIQETQEALGASAKEIGIAIREAVDRVKKG SRLVMGKFQAPAEGTHNLTSFCLCDAWIGCDTKTSLKLKVLKRSRAGTRGHVAEEGPV AEDGIEEEEEEEEEEYDDYESEYSDDEEDEKSKGKGKVANGVAHQKANSDIDSGSDD</aaseq>

Gene Sequence

<dnaseqindica>276..461#599..694#1405..1525#1622..1728#1837..2054#3107..3284#3380..3499#4489..4575#5289..5399#5506..6327#gatctcgcctcgcctcgcctcgccgcgccgccgcgccgccccagatccgccccgcctccggccatccccgccgccagatccggtgggggaagccccctctctccgctctcgcccaaggtgagccaagcccctccccccgccggcggccgcaaaccccccctccccctcggctcgggattccggtgggtttgactgtttgttggtggtgcgcagggggggttggtttatccggtaggaggaggagtagtgaggtggtggtagtggtttaagcggccatggcggcggcggaggagaacagctcgctgttcctcatattcatcctcaccatgatcgcgctccccctcgtgccctacaccatcatgcgcctctgccgcgccgccaacgtcaaggccaagaccatccactgccgctgctccggctgccaccgctccggcaagtaccgcaagtcgatctacaagagggtgggtggtggatactgggggattcgctcctctctctctttacatgcttgttttgttaggctccccttctctggtttggacagtgttgtgtgactcggttttcgtggatgtgttctggttcgttcgctttgttgcagatatccaacttctcgacatgcagtaacctcaccatcctgcttctctggatagttatgatcttccttgtatactacatcaagcatgttagccgcgaggtatgtaaaattctcatttcgggctggtgcaagttgtcagctctgttgttccgtgtgtgttcagtgagttgattccgtcatttgcttgtgcaaaattgatacggagtgatttcttgtttaattaactctattcctttcaatcagaattgttcagccagtaggcttttatgtaaaatgtacttaaacaaacctgctatcttacatataacttgaaatgcgtgttgatgacatttatctactcggagaaaatcccatattagctagatttgcataattggagctagcaccacaatgctcatgtttgatcacttccaacatacaaggaatgacactttgccaatttaatgaacataagtaggcgcagccactttggggagtgggatgcactacaaagagtagcatgccatatcgctgatttagtttctgttgttactcttgtaaaaattgtcacaacaaccatccatgctgttcaaactatgatttggaccttgctattgaagattttaggcaccatttaatcatgaatatttagttttataaaaaagggtgagttggaggtattggtgtgttctacaaccatccctactttagttcttttatggctgcaaataaatgcacataagtgtttttttgttgtttcttaacttgcatatttgcagatgactgtatagaaatgctcaactggtcttccatgtttttggatttcttaggtacaagtgtttgagccgtatagcattcttggactggaaccaggtgcatcagagtctgatatcaagaaatcataccgtagactttctatccaataccatcctgataaaaatcctgatcctggtaaagtttgtctcacatttttgataatcaatggtgctaaataagaaatgtagctgggcttattattattatttttttgttttgaaactttcccagaggcccacaagtactttgttgaatttatatccaaggcatatcaggctttaactgatcctgtatctcgtgaaaactatgagaagtatggtcacccagatggacgccaggtaatatggacatctgttattcttgacactctacttaaaactaaacatatacatgtgatgtttcatggtgttcgagacaaacattaacacggtgtgtttgtggtccaggggatgcaaatgggcattgctttgcccaagttcttgttgaatatggatggtgcatctggtggaataatgcttcttggaatagtagggctatgcatactcttgcccttgatgatagcagttatttatttgtcaaggtcatcaaagtacaccggaaattatgtcatgcatcaaactctgtccacttattactacttcatgaagccttcactggctccaaggtatcagcgctaataagacctcattctaacatatggtcatttcttgtgaggttaacatgttagcatgctggaacatcatgtaggatgtagcattactgagttttaattttgaatgaatatacttatgacatcatctgctacctgaatgtcaggcattgtgaactagagcaatagttaaattggactggagaatgtttacagtctctgaatgtattgtttttatctctactattataaaaattgaagatgtttttgccggtattttggtacgtcatccgtatttgagtcgggtttttagttcattcgtttttggaaatacacatccgtgtttgagttagattttaagcttgtttccttttagaagtataaaggagtcgtatgagaaattttttaaaaaaactcgcatgctaacttgagatgaaatacgggctcctaattgcagctcatgattttcttaaaaaaaaaaatccaagcgaattcccacaatgaattttacctaactaaaccgtaaaacaataataaaattaaaatactacctctgtcccaaaatgtaataacttttggctatgaatctggacacacagttgtccagattcatagctaaaaatgcttatattttgggacggagggagtagtatttacccgtttcaacgcacgggcaatttttctagttagttatcgtatatgagattttgagtattaccatatgatccagtgaacattaattttttaaacttattttattgaacttaaatatttttttaaaaaactttttctaacctctgttggagatatggcagttcaaagaataaaaagtgacattatcacatgtaaaccaatgtatactgacacatcatattgccagtttagagttagaaaactttgggttacttataaaacctttcagtgttctactacttgtttgttggtatttgaatgtctgaaccgtagaccaaattgtcctgagcatcctttctgttatcagttctagatatgaaaatgcctcgtttttgacatatctgatccgtggaactattggctgtatgttgcagcaaagtcatggatgtcttcattaaggctgcagagtatatggagatgccagtccggcgcagtgacgatgaacccttgcagaaattatttgtagctgttaggagtgaattaaatctagacttgaagaatattagaacagaacaagctaaattctggaagcagcatccatctctagtgaaggttggtctttttctgctaagtgttatggcacacaaacttatatctgtgacatgacaaatcttgcaagctcaaatatctgtcatctactcttgcagatggagcttttgattcaggctcacctcactggagagtcatttgctttgacaccagcgttactgaaggattacaggcacatgcttgaacttgcacctcgtcttctggatgaacttgtcaaggtacttgcttgttgcttaaatttatgtctttgatttttttcacgatttatatgtcctggacattcttgtccttgtatggtgtttcctatatgcctacgaatgaggctattgcaatttatagaaaacccaaaaccacatgtactctattaatgtgttctagctctctagacataatttatgtgcacttttgttttctatagttgtcttggataatcgggtgatttttatgttgcttaccgtagctgtttgatgccacatgatatggttagttagtacagcaaattcagatgggatgactgataggatgtatccaatgttccgaactaactggctcaatcatcacatttacatgtctggagctgagattgctttctagttttggatgacaaaatagagaacactttgttttgactactatttttttctataggtaggtaacgtaaacatactagtgttcaagttttactttacacaaatatctatgcacattataatatatgtgctatagaatgcttgtgctgtagctgctcaattactaaacctcttgtagtatccatcgattgaaggtgtttgaacaatgagtggctatactgaccatgcttccatgcctaatggatatgcattgctcaggttcttacttctaacttcagcatatgcatttgtggtttctaagaagcaatcacatgccagatccgaatcttgtgttacagagatgtttattgaccatgcaattgttagacttgcagtcttgatggagtacatttctaattgtcagttgttgtttagtgcatatcatttactccaatttctgtaacacatataggggaaaaagatttttctattacaccattgtgcttttttcatcagaaataaatagccaccaacccacaaacttatgttggaattcatttttgtttacatgtgaatgggcatgctgctgtctgcatttgtttcttgttctacattctaatatgtttgttggcttgcagattgcactactaccaaggagtccccatggttttggatggctcaggcctgcaatcggtgtaattgagctttcccaaaatatcatccaggtatattttggagttccatatgattttgctgtagccgatatgtagtgaatcaatgtctcttgaaatgtgcatatatgttgcttaaactttccagacctaaattagttgttcatgtgaattgagaaattagaattacatagcttaataaggtatatattcgttgacattttgctatagacttgttgagaaggctattttaattagtgaaattgtaatagcatatggtaagactagattgtatggctcattggtttgttaccaaattatatccactttggtttggtttacttcctcaatatatctatagaaaaggcaaatattgaagtgagtctcctggacagcaatttatatagttatggattcaagcaaatatgaaattaattggtttctttccctacatggccaacatcatcaatgttgtgaacctggaccctagatatgactgctaattgaaaatcaggattatattgtttaggaaagcaattatgcatgttatgtaagattaggtatttttcactgtgctgtactatggtgttgtgggtgctttcaagtaatctctgattggtgtatgtggtgtttctcttgtgttctttggctcactatgctcaaggttctgttattgtcttgttttttcatttcattaccatggacaactgtattataagctcattttggtaccagtataaagatttgtttgcctgcatattatataggctgtccctctcagtgcacgaaaagctagcggaggcaactctgaaggaatagcacctttcttgcagctaccgcattttactgaaacggttgtcaaaaaaattgctcgcaaggtaatttctgttttgccttctcagcgagcaaagttattagcccgtcttttgtagcaatgtttttaattttagaaatagaattaattggtttcatgtttgactgcagaaaatccgttcattccaagaattctgtgacatgcctgtggaggaacgcgccacgttgctgacacaggttgctgggctttctgatgaaggtgctcaagatgtagagcttgtgctggagatgattccttctattgaagtggatattaaatgtgagactgaaggcgaagaggggattcaagagggtgatgttgtgaccatgtatgcttgggtctcacttcaccgtcgcaatggcctaactgctgctcttccccatgctccttccttcccgttccacaaggaagagaacttctggttgcttctagcagatgctgcatcgaatgaagtttggttatcccagaaggtcagcttcatggatgagactaccgctataactgcagcatcaaaagctatacaagagacccaagaagcactaggtgcaagtgcaaaggaaatagggattgcgattagagaggcagtcgacagggtgaagaaaggcagtaggttggtaatgggcaagttccaagccccggccgagggcactcacaacctgacttccttctgtttgtgcgacgcatggataggatgtgacaccaagaccagcttgaagttgaaggtcctgaagcgcagccgggcaggaacaagaggtcatgtggctgaagaaggcccagtggcagaggatggtattgaggaagaagaagaggaggaagaagaggagtacgacgactacgagagcgagtacagcgatgacgaggaggatgagaagagcaaaggaaagggtaaggtcgcgaacggagtagcccaccaaaaggcaaactccgatatagattctggcagtgatgattgatatagtaccttgagttgtccaaccatagacacttaacatcgttgtttttgccctttgtgcaccctgttgaaacttgaacatatcagttgtcaacttatagagcaatcggcgatagctaccaaagttaccatttttgtttaatattgttgtgttggatgaatgaaaaataattg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0307200, RefSeq:Os04g0307200