Os04g0374175

From RiceWiki
Revision as of 11:05, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0374175| Description = Similar to NBS-LRR protein (Fragment)| Version = NM_001186970.1 GI:297723070 GeneID:9271144| Length = 8039 bp| Defi...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0374175

Description

Similar to NBS-LRR protein (Fragment)

Version

NM_001186970.1 GI:297723070 GeneID:9271144

Length

8039 bp

Definition

Oryza sativa Japonica Group Os04g0374175, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:18265839..18273877

Sequence Coding Region

18265839..18266087,18267914..18267921,18268117..18268141,18268993..18269007,18269917..18271093
,18271626..18271696,18272009..18273210,18273850..18273877

Expression

GEO Profiles:Os04g0374175

Genome Context

<gbrowseImage1> name=NC_008397:18265839..18273877 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:18265839..18273877 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgagggctagcgtgacatcgagcctgtgctcctcgcttccacccacggtcatggatcgagctcaagggcaaggaggcagagcgaggagagcgagctcgtcttggtgcttcgacaacgaccatcctggcgacatgctggttggggacgaccactggatgccctgctcatgtctcttgatctctgtttgtgcagcacgaaggggcgtcgaaggaggcctgacggacaaggccgtcggcgatgcagaggcacaaatggaaagcgagcaggcaggttcagtgcgtatggccccaaaatttagcacttatgatcatgcagcagtgctcaatctggctatggacaaggtcgtcggaatattgaggggagtagctggtgttgctgctgacgccaatgcattccgtgaattcttccactgggtcacaccacacgtcttagctgccgtacgttctcaacagcagcagcagctgctgcaactggattcaggagggccagtatcagcatcaactggaaacaacagaacagctccactgcatcagattcaggatgatcttcagaaactcgagcacaacctttgggtgatccaaacaactattacatccacgatgcatgatctcatcgaccgccttgagtggcatagccacagggaaacagaagccaggcaccttcgccagatcaaggatgcagtgtacgatgccgaggacctccttgatgagtacaattactatgctcttaaggtgaaagtggaggcgagcaagaacttggggcaagatcactcacatggacccgttttagagttcttggacagtgtcaacttcaatggcaacttcagcaaagtgatggaaatccaagacagactgaagcatgttttcgaccaatccatgggtttaggcttgcacaaaacacccaagaagtttgatcgattagtcaggccagagacatgccgtgtccttgatgagtcacagatatttggtcgtgagcaagaactgaaggagttgatgcaaatgctaggagtagatggacacaagagaggcaggcctgcagcacacactaacactactgaagcaagaaggatggagttgcctgtgttgccaatagttggcatgggaggtgtcggcaagacaactatggcccaacaaatctgtgaggatccagaggtgcgcaaacattttcatcaccgcataatctggatatgtgtctcagatgaatttgaggtaaacaggttaacaaaagatgctctgaagtctcttggagtcaagtcagaagataccgatacaagggataatcttatggttaatttacgtgatagtgtcaagtcaaagaagtttttgctcgtccttgatgacatgtgggatgatgtcttaaaggatgagaaaggatggagaacatttcatagaactttaagcaatggtcttgatggcagtatgattttggtcaccactagatcttccaaggttgctaacttagtcagcgacgcacaactagtctctaaggatgagcgcttcatcatacaacatgtaagtgacctagctaaaatccctccaaagactataaatgccaagggttgtgttttcaaaagatatcctcaaggttttagtgatcttatttccttaaagaaaattgaatcaaagggcttcatatataataaggataaagataagcaatgcctaaggtggcccataatgcgaacacctgacaggggcgaagccagaacaaggctgagccccccctatgctccaaacctggctctgccactgacacctgaagaacagttacagatgacagaggagcagattgaattgttacctcattggaaccttcagcatttgacaatagagtattacctgggtcaatcttgccccagttggctccggccagactgcctgaaaatgctgacttcacttaaactttcttattgcaagaacattcagagcatatcattctttgacccactctttcctgattcggaagattcaaagaacatttgtcaccttgaggtgttggatatccaacattgtcctaacatcaattggcaaggtttggtggctttaccttcttctcttagaaagattatccttggaaactttggccattcgacggatcactttgtgagttgcttttgtggcctcgctctcctgaaatgtctgcaaatacagtgtgaattcttaatgtctattcccctgcaagtttgtaaaaataatcttcaagccttggaggatttgcatatttatcagtgtagctccctcacatccatctatgtctcagaggcaagcagcaggcaccctgttggagtattttcatccctttcaagtgtcaccatttctctttgcaatgcactgttgagtcttgatgagttcctgatgcctgcttatatgcccgtcgtgaagaccattcttgtggaaagttgtcgacaattagcattactgccgattgatgagcttcatcgcttttcttgcttggaggtgctacgtattgaatcatgtcccaatttgaatacacggaggataatgacattaccatcctctcttcggaagctcagtttactcggttgtccaagcatagagttcatcgacaacagccatctggcgagttctgtgacactcaagggactcaacctgaaacttgttagctgtccagacctcatctctattgttggtgctatatctatctctgaaatacagtcgggttatatacatgattgccccaagctgatggagatgacacagcctttcacaagaggtcgctactggagagagccaaaagaaagtgcagactaa</cdnaseq>

Protein Sequence

<aaseq>MSRASVTSSLCSSLPPTVMDRAQGQGGRARRASSSWCFDNDHPG DMLVGDDHWMPCSCLLISVCAARRGVEGGLTDKAVGDAEAQMESEQAGSVRMAPKFST YDHAAVLNLAMDKVVGILRGVAGVAADANAFREFFHWVTPHVLAAVRSQQQQQLLQLD SGGPVSASTGNNRTAPLHQIQDDLQKLEHNLWVIQTTITSTMHDLIDRLEWHSHRETE ARHLRQIKDAVYDAEDLLDEYNYYALKVKVEASKNLGQDHSHGPVLEFLDSVNFNGNF SKVMEIQDRLKHVFDQSMGLGLHKTPKKFDRLVRPETCRVLDESQIFGREQELKELMQ MLGVDGHKRGRPAAHTNTTEARRMELPVLPIVGMGGVGKTTMAQQICEDPEVRKHFHH RIIWICVSDEFEVNRLTKDALKSLGVKSEDTDTRDNLMVNLRDSVKSKKFLLVLDDMW DDVLKDEKGWRTFHRTLSNGLDGSMILVTTRSSKVANLVSDAQLVSKDERFIIQHVSD LAKIPPKTINAKGCVFKRYPQGFSDLISLKKIESKGFIYNKDKDKQCLRWPIMRTPDR GEARTRLSPPYAPNLALPLTPEEQLQMTEEQIELLPHWNLQHLTIEYYLGQSCPSWLR PDCLKMLTSLKLSYCKNIQSISFFDPLFPDSEDSKNICHLEVLDIQHCPNINWQGLVA LPSSLRKIILGNFGHSTDHFVSCFCGLALLKCLQIQCEFLMSIPLQVCKNNLQALEDL HIYQCSSLTSIYVSEASSRHPVGVFSSLSSVTISLCNALLSLDEFLMPAYMPVVKTIL VESCRQLALLPIDELHRFSCLEVLRIESCPNLNTRRIMTLPSSLRKLSLLGCPSIEFI DNSHLASSVTLKGLNLKLVSCPDLISIVGAISISEIQSGYIHDCPKLMEMTQPFTRGR YWREPKESAD</aaseq>

Gene Sequence

<dnaseqindica>1..249#2076..2083#2279..2303#3155..3169#4079..5255#5788..5858#6171..7372#8012..8039#atgtcgagggctagcgtgacatcgagcctgtgctcctcgcttccacccacggtcatggatcgagctcaagggcaaggaggcagagcgaggagagcgagctcgtcttggtgcttcgacaacgaccatcctggcgacatgctggttggggacgaccactggatgccctgctcatgtctcttgatctctgtttgtgcagcacgaaggggcgtcgaaggaggcctgacggacaaggccgtcggcgatgcagaggttggaggaattgttctccgcttcttcttgtgattcaaaccatggggctaaggggaatttcatccattgaagtggtaaaagaggcaaaatcaagccaatgaattaaaaaagggacgggttcgtttgaaagatcgttcagctttagcatttttgctgcgcgaaacaaaaaaaaataccagtattaactattataaacttttttataagaaaaaaaactatataaaaaatgttttataaaaacatattatttaccagtttgaaaacatagtaacaataaacaaggaaaggaagaagggcaactgtttattactacttccgtcccaaaatataagaatttttaaaattggacataattattaagaaaataggtagaattaaatggaggagagattgtgtttagttaagaagtgaaggtagacgagaaaagtgaatgatagagttgtgattagtttggaagaggatgttaggaagaagtcgttatatttttagacaagttctgagtgatagaagttattatattttatgatgaatgaagtatgagatgtagtagagacattgcaggtttacgtttcagtggaagctagcccctgttggcaaaatacttcgacttgtttgacaactcgagcgaagaggattggaagtttacatgaggagattgatggtgagattaagatgtgaatttgatttttaatcccaatatcttgtttagtagatatggtgaaaattgatagggagtttaatttgagattatgtcattaatgaaaaatggatgcttgggatttatttaggcagagtaaaggatgaattccctcttaattaccacctctattcaggtattgaaaaggagggagtctacagagtggcggatctaggaacttttatgagtctggacaagcctaacgatagagaaggacaattaactccatacaaccacgtgcatgatttaggatagatcaagttctaatttatttttttttgaagagaatcgacttctaatttatgaagaagagaagcgatgcgcaaaattatatcgatgaaatgtaactcgttaattgttaatgttgaataactagacagttatatatatagttagtcattttgctactttatgtgctgattaactgatctgacattcattagaactagttaattaaacacgtaatttgctacgggtagtattttactcaattgtatgcgacaggctaaccgagactggctctgccgctggagaaaattgatggtgagattaagaagagaatttaatttttaattctaatatcttgtctactagaggtggtgaaaattgaatgggagtttaatttgagattagattattaatgaaaaaatattattgagatttatttggacaaaataaaggatgaattatctcctaattaccaccccttctcaattctccatcctcattccccgcggcagcggcaggctcaatgccttctcgcatcgattcttgatcccaaggagatggtcaaggggagaagcggcgcttctcgattcgacggcgacgaccttggaggagggaggaacggcggcgcttcttgatccaacggcgacaaggcatggggggagcaggcgcaggagggttacctcttgtcgatcttggcctgacgctgacggcggccatgggtagagccgtagaggtggcctcctgcccgccggacgctgtgctccttctcccccgcatcgaacagtgaactgtgaggtgtccttgttgcctggaatactttggctatttcttattcccttggttccaaccaagaatttgattcacttttttttttttgtgctgctctcggttcgatttgcaggcacaaatgtgagcatcagactggatggccaacatttagggtgactccactccagagcgctgcttgatccatcttctgctttcattgttactatttctttgcttccaaaccacatatgcattcagggtgactgaccgaatccaatgccattgatttcttttgtcctctgtccaccaatcttcgaaattttgtctggctagcagggaaagcgagcaggcaggttcagtggtcagtgcagagagagcaaccctgcagctattgattcagtgcagagagaacccagcaccagttcgcgaaaaaaagaacccagcaccaaagctgcaatgattcagcagctgcagctgttgattcaatgcagagagaatccatcaccacatctgatcgcagaagatgcagatgcggttctgcagacgatcagccgccagcaaaacaaacgccagcgaaggaccagccacatcaagttcaacgatctccaaattgacatgcaacacaacaaaagctgattagaccatgggagaggtgcaaactggtgtgcaacaacaaaaccttattcgaccattgaacaggtgctcgtgtgcggagcgtgcgctgaattctcctgaagtgaaggctaccagcgccgtattggcacatcagggatatcaacttctacaacaaaaactgctcattagttcccagatgcaggggtattccaaaatggcctcttaatttgatccatcttatgtccagtggtgcctcagctaccattctttgggaatggatcttgttaggcaccaaaaactccaatggggaggcaccactttttgtaagcaaaatgttaatatattgtccaactagtaataactataatgataaccccatgataccatgctatggacaacttcatttcaaaaggtaagagtatggaataaagctgagtggtgagttaagtatatggactgaatgggacagctattagtggccccttttcttttttattttaattttcttttttgtccttttggcacaacaatggaacatcctgggtaccttttagtaatttcccagaaggttagctgagcacttgtgcgtggatgcagcgtatggccccaaaagtgagttgagccccttcttctacataaggaaagaactaactgaaatttggggctgtactcttctaaatttcagttagcgctcttcgtttaatttttgggagacgaaatttgtactctatctggaactagcgcatctgcactctctttcctgtgatcctatctaatctctattcatattgatctaacatttttttgaacaaacatgtgattgctttgctcataaaagacatcaagaagagcaagatcaagaagaggagctagctaggtagtctgatcattgggtagaaagatttgtgaaacaaattaaggacccaggtacgtgatccaattatttcccttctttactccagcttggtatgtttggagtatcagatatactacaattgtcagcagaaactgttattttccaattgtagacaaagtctgcatgttgcaatttcttgtgttcttggtcgattttatactgtactagtaagcttagaacaaaatttcaaactgtgcttgctgtcttacatgtttctttcactacgactagtcgaacttccagagaaattatgtgcctatttgagatatagttgtatgaaatacaattatacatttagatgtccaggcagactgcatgttgtagccttttgtgttgctcttcagttttgtactagacaagtaatgttagaacaagatttcaaaattgtgtgttttgtcttgcatgttgctttaaccaaaactagtcgaatttcctgagaaatcatgtgccttcaaccactagatacagtagacccggcataatttgctagactttaaaagcaaattgttttttgaatggtagatagataggtgttaggtttgccttcaaccactagatacagtaaatctagcttttccatgatgcatctctggaactcttaacagtttagcacttatgatcatgcagcagtgctcaatctggctatggacaaggtcgtcggaatattgaggggagtagctggtgttgctgctgacgccaatgcattccgtgaattcttccactgggtcacaccacacgtcttagctgccgtacgttctcaacagcagcagcagctgctgcaactggattcaggagggccagtatcagcatcaactggaaacaacagaacagctccactgcatcagattcaggatgatcttcagaaactcgagcacaacctttgggtgatccaaacaactattacatccacgatgcatgatctcatcgaccgccttgagtggcatagccacagggaaacagaagccaggcaccttcgccagatcaaggatgcagtgtacgatgccgaggacctccttgatgagtacaattactatgctcttaaggtgaaagtggaggcgagcaagaacttggggcaagatcactcacatggacccgttttagagttcttggacagtgtcaacttcaatggcaacttcagcaaagtgatggaaatccaagacagactgaagcatgttttcgaccaatccatgggtttaggcttgcacaaaacacccaagaagtttgatcgattagtcaggccagagacatgccgtgtccttgatgagtcacagatatttggtcgtgagcaagaactgaaggagttgatgcaaatgctaggagtagatggacacaagagaggcaggcctgcagcacacactaacactactgaagcaagaaggatggagttgcctgtgttgccaatagttggcatgggaggtgtcggcaagacaactatggcccaacaaatctgtgaggatccagaggtgcgcaaacattttcatcaccgcataatctggatatgtgtctcagatgaatttgaggtaaacaggttaacaaaagatgctctgaagtctcttggagtcaagtcagaagataccgatacaagggataatcttatggttaatttacgtgatagtgtcaagtcaaagaagtttttgctcgtccttgatgacatgtgggatgatgtcttaaaggatgagaaaggatggagaacatttcatagaactttaagcaatggtcttgatggcagtatgattttggtcaccactagatcttccaaggttgctaacttagtcagcgacggtaatcactatgagctgaaaggattgcaagatggggttttctggaatttcttcaaactatgtgcatttggatctgtccagagttggagcaacaggccagagttgcagcgcattcgtccagaattggagcgcattggtagagctatacttcccaagttgaagggttcacctttggctgccaaaactcttggacgattgttgaaatgcaaccgaagcatagagcactgggaagacatattgaaaagagctgtggcgattagaacaagaggagactgacattttgccggcccttcgactaagctatgcgtacctgccgcagtacatgaaagaatgcttctcaatctgtgctatatatccaaaggatcacatatttcaaaaggaatttttagcagacatttgggtagcacaagggtatgtggagcctcaagatgcatcctcttgctttgatgaccttgtaaaccgatccttctttcagcaagcagcccaccaatatgataatcagtatgtaattcatgatttgctacatgatacagcacaactagtctctaaggatgagcgcttcatcatacaacatgtaagtgacctagctaaaatccctccaaaggtacgtcatctatcaatattcactaatggaaatatcagatgttcagatttactgtatatttgcgcacaaaataaaaaattgcgttccctagtatgcaatgattcttacataaattgggaaccttttgctcccatgattgacggttggttcaatgaacttttgaatatccgtgtattgagttttgatctttcgactgtcagaaagctacctgagagcataggcaactcaatacatttgcgctaccttggtttattaggaaattctacttttgagacccttccttcatctgttagctgcctgtatcatgtccagactataaatgccaagggttgtgttttcaaaagatatcctcaaggttttagtgatcttatttccttaaagaaaattgaatcaaagggcttcatatataataaggataaagataagcaatgcctaaggtggcccataatgcgaacacctgacaggggcgaagccagaacaaggctgagccccccctatgctccaaacctggctctgccactgacacctgaagaacagttacagatgacagaggagcagattgaattgttacctcattggaaccttcagcatttgacaatagagtattacctgggtcaatcttgccccagttggctccggccagactgcctgaaaatgctgacttcacttaaactttcttattgcaagaacattcagagcatatcattctttgacccactctttcctgattcggaagattcaaagaacatttgtcaccttgaggtgttggatatccaacattgtcctaacatcaattggcaaggtttggtggctttaccttcttctcttagaaagattatccttggaaactttggccattcgacggatcactttgtgagttgcttttgtggcctcgctctcctgaaatgtctgcaaatacagtgtgaattcttaatgtctattcccctgcaagtttgtaaaaataatcttcaagccttggaggatttgcatatttatcagtgtagctccctcacatccatctatgtctcagaggcaagcagcaggcaccctgttggagtattttcatccctttcaagtgtcaccatttctctttgcaatgcactgttgagtcttgatgagttcctgatgcctgcttatatgcccgtcgtgaagaccattcttgtggaaagttgtcgacaattagcattactgccgattgatgagcttcatcgcttttcttgcttggaggtgctacgtattgaatcatgtcccaatttgaatacacggaggataatgacattaccatcctctcttcggaagctcagtttactcggttgtccaagcatagagttcatcgacaacagccatctggcgagttctgtgacactcaagggactcaacctgaaacttgttagctgtccagacctcatctctattgttggtgctatatctatctctgaaatacagtcgggttatatacatgattgccccaagctgatggagatgacacagcctttcacaagaggtcgctactggtacgtgctaaggaatcacacttgatagctcttttttttttctgttaaaactggttatcttcatctatcatagagtaatctcattaactttttgataattttttttgtatgaaatatttttaagctcacagcaaattgtcatgctagaagtgctctgcttccatatcataaattgtgttgtacttatttataacatctagagttctagactcgaccaaatctcataattggtattacagttagtcgtattttcatcaactgtggcaaacagaccggtttccgctggctgtcaagtccacaataagccgatactagctttttggagacttcacttttacaatactatgtcgtagaatactaatttgtttagatttagttatgctctaggaaaagaaagctgaaatgaagtacgagttgtactatttatattcattggatttgatagttcattgttgttaatggtttcagatgatttcaagataatgtcgagtgttcaagatgatttcagatgcaaacagcacagaacatgccagcataagttatgttggggatcagggagaatcatctcggcaaactctacatcattcacttatatcataatgtttgaagtttagtaataaactttgttattatatataggagagagccaaaagaaagtgcagactaa</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0374175, RefSeq:Os04g0374175