Os04g0379900

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Revision as of 11:06, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0379900| Description = Similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase)| Ve...")
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Gene Name

Os04g0379900

Description

Similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase)

Version

NM_001059129.1 GI:115457987 GeneID:4335627

Length

4187 bp

Definition

Oryza sativa Japonica Group Os04g0379900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:18581169..18585355

Sequence Coding Region

18581579..18582139,18582549..18583050,18585152..18585261

Expression

GEO Profiles:Os04g0379900

Genome Context

<gbrowseImage1> name=NC_008397:18581169..18585355 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:18581169..18585355 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgttcgcggcgtcccacaccgcatcgccgtcctcctgcggcggtgtggcgcagaggaggagcaatgggatgtcgccggtggtggccatggcctccaccatcaacagggtcaagactgctaagaagccctacactcctccacgtgaagttcatctccaagtcaagcattcactgccaccccaaaagcgggagattttcgattcgcttcaaccttgggccaaagagaaccttttgaacctcctgaagccagttgagaagtcatggcagccacaggacttcctgccagacccttcttccgatgggttttatgatgaagtaaaagagctgcgggagagggctaaggagatccctgatgactactttgtttgcttagttggagacatggttactgaggaagctcttcctacctatcaaacaatgcttaacacccttgatggtgtccgagatgaaactggcgcaagcccaaccacctgggctgtttggacaagagcatggactgctgaagagaacaggcatggtgatcttcttaataagtacatgtaccttactggacgtgttgacatgaaacaaattgagaagacaatacaatacctgattgggtctgggatggatccaggaactgagaataatccctacttgggtttcctttacacatcatttcaagaaagagctacatttatatcccatggcaatactgcaaggcacgccaaggagtacggggaccttaagctggctcagatatgtgggacaatagcagctgatgagaagcgccatgagacagcttacaccaagatagtggagaagctcttcgagattgatcctgactacacagttcttgcatttgctgacatgatgaggaagaagatctcaatgcctgctcatctgatgtatgacggcaaggacgacaacttgttcgagcatttcagcgctgtggcacagcggctgggtgtctacactgcaagagactatgccgacatcctggagttcttggtccagaggtggaaagtcgcagatctcaccgggctgtccggagaagggagaagggctcaggatttcgtctgcacgttggcgccgagaatcaggcggctggatgaaagagcccaagcaagagctaagcaagcgcctgttattcctttcagctgggtttatgaccgcaaagtgcagctttga</cdnaseq>

Protein Sequence

<aaseq>MAFAASHTASPSSCGGVAQRRSNGMSPVVAMASTINRVKTAKKP YTPPREVHLQVKHSLPPQKREIFDSLQPWAKENLLNLLKPVEKSWQPQDFLPDPSSDG FYDEVKELRERAKEIPDDYFVCLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTTWA VWTRAWTAEENRHGDLLNKYMYLTGRVDMKQIEKTIQYLIGSGMDPGTENNPYLGFLY TSFQERATFISHGNTARHAKEYGDLKLAQICGTIAADEKRHETAYTKIVEKLFEIDPD YTVLAFADMMRKKISMPAHLMYDGKDDNLFEHFSAVAQRLGVYTARDYADILEFLVQR WKVADLTGLSGEGRRAQDFVCTLAPRIRRLDERAQARAKQAPVIPFSWVYDRKVQL</aaseq>

Gene Sequence

<dnaseqindica>3217..3777#2306..2807#95..204#cttctctaaccccctgctgttgctagcagaagtccaggtggacaagaacgcgaggaggggaagaatcatccccgagatctcgctgccgctgctcatggcgttcgcggcgtcccacaccgcatcgccgtcctcctgcggcggtgtggcgcagaggaggagcaatgggatgtcgccggtggtggccatggcctccaccatcaacaggtgaccggatccctctagtccctcctccctccctccctccctccccgtcgcgcgcgtgatcttggtttggtagggtgggttcttgcgcgcttcggggttcttcttggttcttgcttctctggggttggtgagatttgtgatctggcggtggatcaagtcaaatcgttggggggtgaaaaatgcatgttctgcgtgctccgtggtgtgttgtgggggattcatctcccacctcctcatcgagatcctgggggtcagaggtgttccaagattgatttgagcttgggttggtttgggttctctctgggggatgcttgattccagatttcctggcctctgatccgacccgagggtttcctccctgctcgtgatctcgatgggttcgtccgtgatccgctccggatttgatgatctgtccatttttttttctttttgcagctttgtgatatttggtttctgcatgtgccaccataagttgattatgttgatgattttgctgaaactattgcctgaaattgaccatggatgattatctaaagctttgatgcgatcttacccatttagatgtaaattattcctgtgcagttgcttctagcaattaaaaacttgtagtttagggcgattagggacttgttcgttcaaaaattggtccgttcaatttgtgtatcttcgacgcttttaaacaaaatcggtctgttgacctgaaattttcctggtgaatgatggctatgtgatggtgttgaactcttgaaactgggactgaatattaataacctgtcaatatcctctgcgagtaatcctttcgtcaggctaatccgctggttaaatagataagttatagagaattagagatgcatgtactgttgaattgttgagttgaaagcactgcttcttatggaaccaccatcaaccaactgagataggtgaaatggtaaaattaaagtgggttggtgatccagaatttttttttctccatgcttttcgcttagggtggatgcggggagaaagctgaaaactagtcgaatagctgttgagatctgaacatgttcaaatctgttgatggtgatagactgattctgaacatttaaggcctgctttgcaaccacctgtgtactccaccgctaacagtactgctttaggatttgtgtagcctcttctttctagagagcacagaagcaccttctatattcaatttgaattatgaatttaagaaattttcattttttttctgctgtttttaggtctgtgctgtagttttcttctactttactaataatttagaattatcaacaagaaagtaacgctagtgtaacaaaagggcagaaagaggatctgcgtcattgcctcccatgatttgataacagttatacatatgcggttcatgattatataccatgccaattatggagtgaattttgcattacgtttactgtttttgtttggtttatcaatcaatcaacactggatattatcatgtagagctcagagaacatggtagtttcaagcttgtcaatgtacctatcttggaaaatctcgaaatcgtagttactactaatgatattacttttgtccatctatcctgtcctaggcttttacctaggttgaaaaaatatttttgataaacactggtttgattaaactgtctatacaaacatcagacctttcttttcacatgaagatgaagatgaagttttttacgcaaaacgaggtggtattaacgtatgatcgattgagttttaattatgacaaactttaagaatagatttatatgatattttaaagcaactttcatatagaaagttttcataagaaacgtaccgtttagcagtttgaaaagcgtgccacgaaaattttaatcttcatccaactcttgttggagaaaagaacaggtgttaggtgtattttttgattttcttttcttggacaccgtaaaaaaattgcttcaaggactgaaaggattcccagcctagagatttggtggcagatggtttattatgagctggatacatcactctacctttctataagctttaattaaactactttcatatctattatgcgatatttcttctccattcttctaatttacttcaattttttgtagggtcaagactgctaagaagccctacactcctccacgtgaagttcatctccaagtcaagcattcactgccaccccaaaagcgggagattttcgattcgcttcaaccttgggccaaagagaaccttttgaacctcctgaagccagttgagaagtcatggcagccacaggacttcctgccagacccttcttccgatgggttttatgatgaagtaaaagagctgcgggagagggctaaggagatccctgatgactactttgtttgcttagttggagacatggttactgaggaagctcttcctacctatcaaacaatgcttaacacccttgatggtgtccgagatgaaactggcgcaagcccaaccacctgggctgtttggacaagagcatggactgctgaagagaacaggcatggtgatcttcttaataagtacatgtaccttactggacgtgttgacatgaaacaaattgagaagacaatacaatacctgattgggtctgggatggtaagagctaatatctatttaggcatgatgatattattttcctttttacttaagtttacaatgctattgtggataaccttgttatcaatagccatgtctccaatattcttaaaataatattttgagaactgagcgctattcattttattaaagcattggacaacataacctttcatgtacagttttacttctaaagcaagtaaaaacattgacttatatttacgtgcctacttgataaattgcttgcaccatgtcagtccatagaaaatgtgcttcattttttgtttttgaaggaaacatggttagatgattcactgcattttagaatcaaccgtggtatggttattcataaattaatttcattgttagccacgaatctaatttcacctcttgtacctaccttctgcaggatccaggaactgagaataatccctacttgggtttcctttacacatcatttcaagaaagagctacatttatatcccatggcaatactgcaaggcacgccaaggagtacggggaccttaagctggctcagatatgtgggacaatagcagctgatgagaagcgccatgagacagcttacaccaagatagtggagaagctcttcgagattgatcctgactacacagttcttgcatttgctgacatgatgaggaagaagatctcaatgcctgctcatctgatgtatgacggcaaggacgacaacttgttcgagcatttcagcgctgtggcacagcggctgggtgtctacactgcaagagactatgccgacatcctggagttcttggtccagaggtggaaagtcgcagatctcaccgggctgtccggagaagggagaagggctcaggatttcgtctgcacgttggcgccgagaatcaggcggctggatgaaagagcccaagcaagagctaagcaagcgcctgttattcctttcagctgggtttatgaccgcaaagtgcagctttgatcatgatcagtgagcaaccgagactgcatcctatatattggttctaagatatgaggttctctatatggaaaaaaatctaggttatctagctggggtagaatgcaattacctgtccatctgccctcacaaaatctgttgtcttttaagttgataacagtgtcgatgagtctggtgagaagctgatgtgagatgcaacagagtgaacttatgttgtattgatgtgagatgagtatggtgacatttatgtgtacttgcaggttttacatgacttgtataagttttaaagtaataatggagatttgtatacagacaagcgtgtgcactgtcgcatgattaagtagtctaaaatccagactatcttttgtgctctgaatttagcagtaataagattgatcggcttgttcgttttg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0379900, RefSeq:Os04g0379900