Os04g0396800

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Revision as of 11:07, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0396800| Description = Peptidase S10, serine carboxypeptidase family protein| Version = NM_001059198.1 GI:115458125 GeneID:4335700| Length ...")
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Gene Name

Os04g0396800

Description

Peptidase S10, serine carboxypeptidase family protein

Version

NM_001059198.1 GI:115458125 GeneID:4335700

Length

3339 bp

Definition

Oryza sativa Japonica Group Os04g0396800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:19612872..19616210

Sequence Coding Region

19612925..19613186,19613607..19613708,19613854..19613949,19614040..19614132,19614229..19614308
,19614415..19614696,19615039..19615166,19615549..19615918

Expression

GEO Profiles:Os04g0396800

Genome Context

<gbrowseImage1> name=NC_008397:19612872..19616210 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:19612872..19616210 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagaggcgccattgctgcggcggtgtgcgccgtgctgctgctgctggtcggcggcaatggcggcgggtggtcggcaatggcggcggccaccatggaggaggacaggatcgtggcgctgcctgggcagccgaacgtgagcttcgcgcagtactccggctacgtcacggtggacgccgccaggaggcgggagctcttctactacttcgccgaggccgagctggatccggccaccaagcccctcgtcctctggctcaatggagggcctggctgttcatcagtgggagtgggagcattctcagagaatgggccattcaggcctagtggcaatgtgctggtgaggaatgagtatagctggaacaaagaggccaacatgctgtatttggagagccctgcaggagtgggcttctcctactccactgacccttccttctatggtggtgttggtgatagcaggacagctagggacaacttgagattcttgcaaggctggtttgccaagtttccgcagtacaagggcagggacctgtacattacaggagagagctatgctggccactatgttccgcaattagcgcagcgcatggtcgaattcaacaagaaggagaagctgttcaatctgaaaggcattgctctgggcaacccggtcctcgagttcgccaccgacttcaactcgagggccgagttcttctggtcgcacggcctcatctccgactcgacctaccactccttcacgacggtgtgcaactactcgcgctatgtgagcgagtactaccatggctcgcttagctcggcctgtgacactgtgatgacccaggtggccagggagactagccggtttgtcgacaagtacgacgtcaccctggacgtttgcgtctcgtcggtcttgatgcaatccaaatccctcgcccctcagcgagggagcagggagctggacgtgtgcgtggaggacgagacgatggggtacctgaaccggaaggacgtgcaggaggcgatgcacgcccgcctcgaaggcggcgtgcccaagtggacggtctgcagcagtgttctggagtacaagcagctggacctgcagatcccgaccatcaacatcgtcggcggcctcgtcaagtcgggcgtcccggtgctggtgtacagcggcgaccaggactcggtgatcccgctgacggggagcaggacggtggtgcagcggctggcggggtggctgcggctggggacgacggcggcggggtacagggtgtggttcgaagggcggcaggtgggcgggtggacgcagtcgttcggcggcggcgcgctgtcgttcgccacggtgaggggggcgtcgcacgaggcccccttctcccagcccgagcgctcgctcgtcctcttcgccgccttcctcgccggccgcccccttcccgactccttccagtga</cdnaseq>

Protein Sequence

<aaseq>MRGAIAAAVCAVLLLLVGGNGGGWSAMAAATMEEDRIVALPGQP NVSFAQYSGYVTVDAARRRELFYYFAEAELDPATKPLVLWLNGGPGCSSVGVGAFSEN GPFRPSGNVLVRNEYSWNKEANMLYLESPAGVGFSYSTDPSFYGGVGDSRTARDNLRF LQGWFAKFPQYKGRDLYITGESYAGHYVPQLAQRMVEFNKKEKLFNLKGIALGNPVLE FATDFNSRAEFFWSHGLISDSTYHSFTTVCNYSRYVSEYYHGSLSSACDTVMTQVARE TSRFVDKYDVTLDVCVSSVLMQSKSLAPQRGSRELDVCVEDETMGYLNRKDVQEAMHA RLEGGVPKWTVCSSVLEYKQLDLQIPTINIVGGLVKSGVPVLVYSGDQDSVIPLTGSR TVVQRLAGWLRLGTTAAGYRVWFEGRQVGGWTQSFGGGALSFATVRGASHEAPFSQPE RSLVLFAAFLAGRPLPDSFQ</aaseq>

Gene Sequence

<dnaseqindica>54..315#736..837#983..1078#1169..1261#1358..1437#1544..1825#2168..2295#2678..3047#tcgctcactcacactcacactcactctctctctctctctctctctctctcgacatgagaggcgccattgctgcggcggtgtgcgccgtgctgctgctgctggtcggcggcaatggcggcgggtggtcggcaatggcggcggccaccatggaggaggacaggatcgtggcgctgcctgggcagccgaacgtgagcttcgcgcagtactccggctacgtcacggtggacgccgccaggaggcgggagctcttctactacttcgccgaggccgagctggatccggccaccaagcccctcgtcctctggctcaatggaggtaaaattaaattaagctaataaatttatgtactgtacatttgtgcagtgtgcatgtagctgcattattggggggaggtgagattgctcgagcattcgagcaagaactgtgcaaggttgataatgtaatgtgggggaaaaaatgtgaaatcgagaaatgatagggagattagtttctgtgtgaatgagcctagagcaaaacatgtttaactttagttaattgagttaaaggaaagattttcttggtttgctgcaaaaatggggggagagagctttgtttttttttttgaattgtatttggtaattaagcttgtcaaatgaggaattctgtaaccagattctcattcaaagggagaattcgttcacaccggaattattggtggttaagattaactttttggtgcccatatgcaatgtgtagggcctggctgttcatcagtgggagtgggagcattctcagagaatgggccattcaggcctagtggcaatgtgctggtgaggaatgagtatagctggaacaaaggtgagaacttgtatgttgtaaaccacaatagagcaaactttttttcttttgtgccctcttttgctttctattgttcctttttttcgccgcgaaaagattgcgaggaacgaagaaaatttgaggcatctgttggatggtttttcagaggccaacatgctgtatttggagagccctgcaggagtgggcttctcctactccactgacccttccttctatggtggtgttggtgatagcaggacaggtgagttctatatatgcatttgccaaattatggctcaattttgcgcagagttagatttaacatttttgaggggcttttgaatttcttaagctagggacaacttgagattcttgcaaggctggtttgccaagtttccgcagtacaagggcagggacctgtacattacaggagagagctatgctggtaatttaaggccactccactgtattgtcttgttgctttgatcaattgtgaattttgttaattcattccctaacttgcactgtaagtgtttttcaggccactatgttccgcaattagcgcagcgcatggtcgaattcaacaagaaggagaagctgttcaatctgaaaggcattgctgtaagcaaatcaccacccccaccaagctacatttcactcaaaactcatgagatctgtcttggaattcctaattacaagatgttgtcatttggttcatcctgatcagctgggcaacccggtcctcgagttcgccaccgacttcaactcgagggccgagttcttctggtcgcacggcctcatctccgactcgacctaccactccttcacgacggtgtgcaactactcgcgctatgtgagcgagtactaccatggctcgcttagctcggcctgtgacactgtgatgacccaggtggccagggagactagccggtttgtcgacaagtacgacgtcaccctggacgtttgcgtctcgtcggtcttgatgcaatccaaatccctcgcccctcaggtgagagtacatggcatgcattttaattactgtgcaaaccgatgagttgcatgcgccaaccagttcagccaagagtttaagctgacaaggaaaagagaggcagttaaggcttgttgttttacatgttttttttttgtttttttggcgttgtaaggttgtcaaaatcgtgatcctgaatcagcaatcatagaatcgtttacatgaaaatcgtaaaattgttgattctacctatatagaatcgtggaatcaggcaccttaactaggatcgtaaagtcgtaaaatcgtatgacggaatcgagattctgacaacctattgtgcgtgttgcgcatttgcttttgcagcgagggagcagggagctggacgtgtgcgtggaggacgagacgatggggtacctgaaccggaaggacgtgcaggaggcgatgcacgcccgcctcgaaggcggcgtgcccaagtggacggtctgcagcaggtgcatttttcctcaaacttttatcagtaatccgcaatatgccgcattgctgctgctgctgctgctgcacttcagcaagctcactcagtagtcagtactgtgttgcattgcaagagaaattaagctaacattcagctctgcaatctgcatttgcctctgcttcagcaagctcactcagtactattgcattgctagagaaagctactccctctgttacaggttataagatcaaactgcttcaagtttgactaagcttataaacaaatatagtaatatttacatcatcaaattagtttttattaaattaataattagatatttattatttttccttattaatgtttttttttccttgaacaacaatgcacgtacatcgatgcagtgttctggagtacaagcagctggacctgcagatcccgaccatcaacatcgtcggcggcctcgtcaagtcgggcgtcccggtgctggtgtacagcggcgaccaggactcggtgatcccgctgacggggagcaggacggtggtgcagcggctggcggggtggctgcggctggggacgacggcggcggggtacagggtgtggttcgaagggcggcaggtgggcgggtggacgcagtcgttcggcggcggcgcgctgtcgttcgccacggtgaggggggcgtcgcacgaggcccccttctcccagcccgagcgctcgctcgtcctcttcgccgccttcctcgccggccgcccccttcccgactccttccagtgacgtcgtcccgaacgacgatgatcacgtctcatgtcaagcgcggaggtgcattgttgttgcgttgcaaatgcgtacgagcgatttcgtgtgcgccaccgctatatatagtactccgtattgttgctgggaatcgaattgtttctcggagaaaatctcatctggaaaatgctgatgtggggtggggaagatgactccatgccgggtttaccttgctctttagttcaaaatagaagtaactaacgtttgttacggagagtactccctccgtccaataaaaaaccaacctagcact</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0396800, RefSeq:Os04g0396800