Os04g0403500

From RiceWiki
Revision as of 11:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0403500| Description = NAD-dependent epimerase/dehydratase family protein| Version = NM_001059234.1 GI:115458197 GeneID:4335739| Length = 3...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0403500

Description

NAD-dependent epimerase/dehydratase family protein

Version

NM_001059234.1 GI:115458197 GeneID:4335739

Length

3771 bp

Definition

Oryza sativa Japonica Group Os04g0403500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:20036754..20040524

Sequence Coding Region

20036899..20037047,20037148..20037236,20037336..20037426,20037890..20037945,20038555..20038701
,20039820..20039945,20040023..20040303

Expression

GEO Profiles:Os04g0403500

Genome Context

<gbrowseImage1> name=NC_008397:20036754..20040524 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:20036754..20040524 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtccccctcgccgctgctcgcccggccgccggcgccgtcgagcccgagcacgtacccgtccctcccgcctcgccggtgcgccccggctgtagcttccgcggcgctccgcgtggctccagccaccgcctcccgagccccattctccaggctggtgaccaagcggaatttcgctgcgtctgatattagagaagactactccactccgattgacgtcgttgccgatgtgaaaaccgagaagattgtggtgttgggagggagtggattcgttggctctgctatctgcaaagctgctgtctctaagggtattgaggttgtgagcctcagcaggtcagggagaccatcttactctgatccttgggttgatcaagttacttggctagcaggagatgttttctatgcaagatgggatgaagtgttagttggtgccactgctgttgtgtctacccttggaggattcggtaatgaagaacagatgaaaaggataaacggtgaggcaaatgtaacagcagtagatgctgcaaaagaatttggaatccccaaattcattttaatttctgttcatgattacaatcttccatcctttcttcttaactcgggttacttcactggtaagagaaaggctgaatctgaagtcctctccaaatacccaacctcaggtgttgtactgaggcctggtttcatttatggtaaaaggaaagtagatggttttgagataccactcgatgttgtaggacaaccattagaaaagctactttcctctgttgaaaatttcacaaaaccgctgagttcattgccagcttctgacttactccttgcacccccagtgagtgtggatgatgttgcctatgctgtgatcaatggagttatagatgacagcttctttggtgtcttcacgattgagcaaatcaaggaagccgcggcgaaagtaagagtgtaa</cdnaseq>

Protein Sequence

<aaseq>MSPSPLLARPPAPSSPSTYPSLPPRRCAPAVASAALRVAPATAS RAPFSRLVTKRNFAASDIREDYSTPIDVVADVKTEKIVVLGGSGFVGSAICKAAVSKG IEVVSLSRSGRPSYSDPWVDQVTWLAGDVFYARWDEVLVGATAVVSTLGGFGNEEQMK RINGEANVTAVDAAKEFGIPKFILISVHDYNLPSFLLNSGYFTGKRKAESEVLSKYPT SGVVLRPGFIYGKRKVDGFEIPLDVVGQPLEKLLSSVENFTKPLSSLPASDLLLAPPV SVDDVAYAVINGVIDDSFFGVFTIEQIKEAAAKVRV</aaseq>

Gene Sequence

<dnaseqindica>146..294#395..483#583..673#1137..1192#1802..1948#3067..3192#3270..3550#acactcacagccgcgcgccgcaggaaaaaggtggaaaaccaccgcccacgcgggacgcgccgccgccgccgctcgccgccgcaccctcacgcgcagaggaggagcccccccgccggagcacctccacctgtttactctgagtgacatgtccccctcgccgctgctcgcccggccgccggcgccgtcgagcccgagcacgtacccgtccctcccgcctcgccggtgcgccccggctgtagcttccgcggcgctccgcgtggctccagccaccgcctcccgagccccattctccaggtaacccccccaccttctccctctgtctccttgttcactggctcactgcgaaatttgggctagagtttacagtgacgcgggtttctctttgatgccgcaggctggtgaccaagcggaatttcgctgcgtctgatattagagaagactactccactccgattgacgtcgttgccgatgtgaaaaccgagaaggcatgaacctgagcagctgaaattctatatcttgcttgttaggtagtgccgttttactccctcccccaacattctgaagcgtttctcgatgtcttgcagattgtggtgttgggagggagtggattcgttggctctgctatctgcaaagctgctgtctctaagggtattgaggttgtgagcctcagcaggtaccacaaccttttctcgtataccttgaaccaatcaccatatgttgtgtaggtcatcactactgagaaatgcaatttttttcatcatgttcctatatgtttccaatagcttccagtctagtcttattacctcacatttcgcaccttagcttgcttattttcgtaatcggatcaaccaacttggtctcgcagtgttaactttctgaaggtctttcttgcatgacttcttgactcttgggtaggctgtccagtgtgagctcctaaagtcttcatactcagcacaaaccatagttttgtatacacattttttattgagggtatgattattggcatcaggggggttagacaaagctttgaaaattggtgtgagtccgagaaaaaaaagagaacatgtatatactatatatctgactaccaaatctgcgttctgtcacatttgcttcacagtgtgtgttcatggcaggtcagggagaccatcttactctgatccttgggttgatcaagttacttggctagcaggtatgctttagttatgtaaatcttctgggttactggatccagcttactaacataagttcactctccaagcctagtagtgttttgttgttgatcgaaactggatatgctacatgtcatgatgctttgacctgcaaataatggctttatcaagtagattatagcgcaacttacaggaagaatgccaatcaccagattttatccagagataatacttttacagaaatatgtacattatgtgtaacagaatctgtggtactttactaactttatgattacgccattctttttacctttcgctttgttggccgatggcatgtctacagtatttctttctgcttgttgctgagttctgatagatgcatatattgtttgtttggaaacaactctgcacctaagtacttatcattgcctctttgttttggccatgattactggatttaacattattctcacagagaccaaacttgatttatggcctcagtaattccaccttaccatcttgttcctgtgacttagtcagatgactatattggatttccaagagtgtgatttatatactgtgtttattttttgctgctctgttcatttaagcatcttactatgttgcaggagatgttttctatgcaagatgggatgaagtgttagttggtgccactgctgttgtgtctacccttggaggattcggtaatgaagaacagatgaaaaggataaacggtgaggcaaatgtaacagcagtagatgctgcaaaagaatttggtaagtaccgcattatgacagtggtgtgccaatttgtttgcatatgcatatgacatcaggtgcatattatgcaattccatgcttaacctaagtttctttgagcagtcacactgaaagatactctttccttcgaattttataaggagaaattttacagtcattgataaagtacctcgaggtacctaaattctactctaatttttttagtaacttgaagtactaagtaattggagataccaaattctacactagaaaatgtagtacctcctggtacgttttcagtgatagtaaaattacccttttttgagggttctttgttttgcaatcatctgcaaattataatctgttcatgtattttgttgctattctcttctactattatttatttcgttctgttctgtaaaaaaataccaggactaaccacataaaagattgtcttatttttcgaaagaacctaatgatacattagtcattctcttctataatcttctcaatctcacaaatttcttaatctatgcatgggtcaaatcagaaaatatgccttgtaaaaattgactgaagggtgtaaaaattgactgaaggggtagtatattgtgctgtatgatgcaaatcaaaccaactggattttttaactcaaaatattcactcaaatgctctgataagtaccacacttgacaactcactgtaatgtgtctacgaggtgtcaacaaatcaaaatgaattactctatgttggtactatcattatgagaatctagagagaaaattgcagcaaatgtacccaccctattataaagtataggctcctacttttacttagttttgcaatttaccaagtttctaattactgtaaagctgacacatgctttgattttattgtagtttaaattatataaatttgtaagcctgaaacttgaaggtagtctggcacgcgttgtgaaataaatgaattttgctaggaaatttgttgtactgattactatgacagattaaatacctcaaacagctggaacttatccctcgtacaactgtgccactgtctcgttaacctactctttccttttttattgaaacggataaaataatgtaacatagcttctttggtgtattcttctgcaggaatccccaaattcattttaatttctgttcatgattacaatcttccatcctttcttcttaactcgggttacttcactggtaagagaaaggctgaatctgaagtcctctccaaatacccaacctcaggttagactatatttatgcctccaaaaaaactcactttacatttttgtcatgtttctaatctatatttttttaatcaggtgttgtactgaggcctggtttcatttatggtaaaaggaaagtagatggttttgagataccactcgatgttgtaggacaaccattagaaaagctactttcctctgttgaaaatttcacaaaaccgctgagttcattgccagcttctgacttactccttgcacccccagtgagtgtggatgatgttgcctatgctgtgatcaatggagttatagatgacagcttctttggtgtcttcacgattgagcaaatcaaggaagccgcggcgaaagtaagagtgtaaactgggagtctttattgccaagatggaagattcaaacatgcggctccttattaagagatatccctgttctgtcttgcactcttgcagtcttagatcatacattcaatggttaaagttaaattcaaaactttgtacagtgtatgaatgtggtgcttgttccctccaagcagagaggaagaatgggctttgatggcaaaggccaatgcgcttcatttcttacg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0403500, RefSeq:Os04g0403500