Os04g0404900

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Revision as of 11:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0404900| Description = Conserved hypothetical protein| Version = NM_001059241.1 GI:115458211 GeneID:4335746| Length = 7717 bp| Definition ...")
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Gene Name

Os04g0404900

Description

Conserved hypothetical protein

Version

NM_001059241.1 GI:115458211 GeneID:4335746

Length

7717 bp

Definition

Oryza sativa Japonica Group Os04g0404900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:20104897..20112613

Sequence Coding Region

20105125..20105151,20105259..20105494,20105581..20105659,20105759..20105825,20105948..20106039
,20106129..20106245,20106345..20106456,20106569..20106675,20106766..20106842
,20106932..20107013,20107117..20107254,20112226..20112435

Expression

GEO Profiles:Os04g0404900

Genome Context

<gbrowseImage1> name=NC_008397:20104897..20112613 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:20104897..20112613 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggggctcgtacgagctcgtcaggacggacgacgcggcggggcacgtcttggatctggaggccggacgctgcgccgccgtatacccaaagggcggcggcggcggcggcggcatcgctccaccaccggtgccgtctccgccttcgtctccggcgtcggcgcggcagcggctcgtctcgctcgacgtgttccgagggatcaccgtactgcttatgatcctcgtggacgatgctggcgcgtttcttccagcaattaatcactcgccatgggacggtgtaaccctggctgatttcgtcatgccctttttccttttcattgttggagtcgctctagctctagcgtacaagagagtgccaaacaaattggaggcaaccagaaaagcaattctccgtgcactgaagctgttttgtgttggtcttgttcttcaaggtggattttttcatggtgttcgtagtctaactttcggaattgatatggaaaaaatacggttgatgggtatactacagagaattgcaatagcttacattgtgaccgcgctatgtgaaatttggctcaagggagatgatgacgtagattctggatttgatctgctaaagagaaaccgttatcaactgttcattggcctgatcgtcatgatcacatacatgggcttcttgtatggtacctacgttcctgactgggagtatcggatatccgttcctggttccacagagaaatctttctttgtgaaatgcagcgtaagaggcgacactggaccaggctgcaatgctgttggcatgatagaccgcaaaatcttgggcattcaacatctgtactgtcgaccggtttacgcccgatcaaagcaatgcagtataaattcaccacaaaatggaccacttcgtcctgatgctccttcatggtgccaggccccttttgatcctgaagggcttctcagctctgtgatggctatcgtcacctgcttgattggtctacaatacgggcatgtaatcgtacatttccagaaacacaaggagagaatcatgaaatggctaatcccctccttcagcatgctaatccttgcgttctcattggacttctttggaatgcatatgaacaagccactgtacaccgtgagctacgccctcgccaccgccggcgccgcgggcctcctgttcgccggaatctacgcgctggtcgacatgtacggccaccggcggccgaccgccgtcatggagtggatggggacgcacgcgctcatgatctacgtcctgatcgcgtgcaacatcctgcccatcttcatccacggcttctactggagggagcccaagaacaaccttttgaggttaatcggagttggggcatga</cdnaseq>

Protein Sequence

<aaseq>MGGSYELVRTDDAAGHVLDLEAGRCAAVYPKGGGGGGGIAPPPV PSPPSSPASARQRLVSLDVFRGITVLLMILVDDAGAFLPAINHSPWDGVTLADFVMPF FLFIVGVALALAYKRVPNKLEATRKAILRALKLFCVGLVLQGGFFHGVRSLTFGIDME KIRLMGILQRIAIAYIVTALCEIWLKGDDDVDSGFDLLKRNRYQLFIGLIVMITYMGF LYGTYVPDWEYRISVPGSTEKSFFVKCSVRGDTGPGCNAVGMIDRKILGIQHLYCRPV YARSKQCSINSPQNGPLRPDAPSWCQAPFDPEGLLSSVMAIVTCLIGLQYGHVIVHFQ KHKERIMKWLIPSFSMLILAFSLDFFGMHMNKPLYTVSYALATAGAAGLLFAGIYALV DMYGHRRPTAVMEWMGTHALMIYVLIACNILPIFIHGFYWREPKNNLLRLIGVGA</aaseq>

Gene Sequence

<dnaseqindica>7463..7489#7120..7355#6955..7033#6789..6855#6575..6666#6369..6485#6158..6269#5939..6045#5772..5848#5601..5682#5360..5497#179..388#tgcgggcgttgttgcgggcgggcggtcaggtgagcgggcgcgtcgcgtgccgcatcggcgcggcgggttcacgcgcttgttgccgcttcggttgctatgcccgttttgctactccgcgaggcgggggcttgggactgattgatcgatgggcaatgcaggggcggcggaggcggaggcgatggggggctcgtacgagctcgtcaggacggacgacgcggcggggcacgtcttggatctggaggccggacgctgcgccgccgtatacccaaagggcggcggcggcggcggcggcatcgctccaccaccggtgccgtctccgccttcgtctccggcgtcggcgcggcagcggctcgtctcgctcgacgtgttccgagggatcaccgtactggtacgcgcagaaatcactccctttttttactttgttaaaaaaaatctctttcttttcgccggtatgtttttcctccgattattctgtcctttaaagatttctacggtttattcctgcaaatctttatggctctttcttgcttgattgccctgtttaatttacgatatatgacaaacaacctaccaaatcggattgcttgccgagtgggtctctgtgcctgctgcatgtgtatcgatcatgtggtgtggtctttggtgccaaccaaacacgctccatgactcatggactcatgatgcatggcagtggcttagcagcagcgaccacacttctcttcccttccctttccctttttgtttgtacttgaaccacagtaaccaaaagagagcagagctgcttaaactaacccaacagctcaaactttagctttatcagggaatatttagcgcatccagcgatgcctgtacgggccgacatgataggttgcgtctttctcttcatgctgtcacacacaacatctgtattctctagccacttattatcttgtccaaacagcaaaatgccctctgtttttcacgcacaactttaaccgttcgttttatttaaaaaaattttaaaaaaatttaaaaatataagtcatgagtaaagtactatttatattttattatcttgtaacaacaaaaatactaattataaaaaaattaaataaaacgaacgattaaaattgagcgcggaaacttatggttgcactgacggagagagtagcaagttagcagcaactgtagccattatagtagagctgtggaagcatagatcatcaatttttagtcgcggcacatcttgatgctatgcaagatatagttatttagaactgacgtgaattaacaatcaccggcctggcctgtcagattctgaggagtgattgctcctgagatgtggctagaatcgtcggtgctcgtggcccctcgatcacagtaggaaaatgccctgcctaccatcgtacggaatttctccagctattggactcgaactgcacggcagatttcgtgcactaatatgttcagtttctgttgctttcaaacctccattagtttgatagataagtgggtaatgtcaagtatagctcacctgtaaatatatttagataagtagatgagcggagcgcatgtaccctctatagttggcacttagaaaaagatatcacgtacggtctgatgcagctaacaacacgagtaatcaaataatcaatagaacttctgatggtagaaatatattctcctacaatgagaaacaaaaaccattatatccaaaaacttggttcaagtgctcgtagaaaaggtagacatacttaaaagttgaagatatatcttctacactaattaggtaccctaaagctcccatgtcactaactagaaatatttgaccattgattaggtgagttattctgtcatggctcttaatcatattaggattttgtgttaaatacaaatatgccattggagatattacaaactctttaatttttattgtcatggtgtcttttaatttttgtaaaaatttaataagtatatgacattctgaacccccacttttcaatcttactattgtttaattttaaaattcaaaattagcaagctattgtagatttgtagagtcaataggaaatgagcctaacttagtgagtggtagtacacattagcccataaccagatacccaccttttgtcctaaaacctttttcttacacggggcaattcaagaaccagaggaagccacattttccggacaccgtggtgacgagccgagtgacagaaaaagagcaagaatgttgatcagaaggccgggcgcaccacctgcgcggaatctcatcaccgggcatcgatccattatcctctgcagcgtccgcgtcggcggttggcctctccgcgtcaagacaagcccatgcgacggccggcgcctttttgccatgtgccaccctccccgccctgcccgccgcggcgtgggatcgatcgatcgatcgatctcgtcgtctcctattctcctctgctttccttcgacgcgcggtcggtcggtcggtgcccactcccaagtcccaatcaccaattcacctcaccggcgcgcggcgcgccgcgtgcttcaccggttggaccccctgctgccacggcaaacggcccgcccggtgcatatgcgcgctcgcgcgcgcgggggcgcggggtggcggatcggttggttccatccacccgtcgcaccagtgcaccaccggcgcgggcgggccgggtgcgcctgctgctccacgccacacccacacatgtttcccgagcactttttctcgcgcctctctgctccgtggtactgtgccacacatctcgtcacctcgagctcctttttctggctttctttggtgccgttttccctgcgtgctcgtcaccaccttccgtggcacgcgacgccgacggctgtggctccgcatagcagccgcctgtacgcgcgccgcacacggactaaccgcgtcaaattgcaggaaccggggctgcgttgcgtaataatctcgctggctctcgccgccatctttggtgtacgtgtgggcggcgaactagtacgtctctcaccgtcaccaacgccaagacgcgcacacaaaccatgcccgcccgtccctaccatgtactgtatagatcgtgtgggctaacacgtccggttttccgttctttccagggtcgcaccatcccgctgaccgtgacgcgaccaatcctagtttctttcgctgcttaattcggttttgtccacttgccctggttgccttctcgtcagctactagctactagctagagaaacttaagtgcgattttgagggagagaatagtggagactaaaacaagtgcaatgtcggattcaggcaaactcggtacaaccactgaaccgcacgaccggtggacgcgatgaccgccacggaagttcttttaaaatcttgatatggtctccggcattttgagtacccgaggatatgacctaccaggatgcagagtcaagatccactgagtctgaaccttgaagacttttttattttagattggcacacgaaaggtgagcgacctttctgatgtcattccatcgattactgctgagaaaaaaaagaacatccctaaacacagaaattagaacagttcgtagtttagggtgccctgttgcaaaagtaatgaacgacagacacagaaaagtagtaaccgataagcctgatagatatagctagctagcagtatggatggagcagcacaaatggatcatggatgtcatctttaaaggagctagatctctgcctcacgtagcagtagctggccctaaatcctaatgcaccatatgttcacaccccaactagacgtgtgtgtaccaattcctcccggaacaatcctgtccagtggtactgaaaatgatagccatgtactacatgaagaggtaccacacgtatatacataatacttccatgtgatcaggctggcctttagctaagctctagccaatctgcaccaaccacaccttagcttgtcccggaatatccagcaatgcaaaatccaatctatccgaaagccatgagagtatgagaccaacttaatactaatggcctatacctgcataatcaaaagaagttcattaggatcagagctagcttacggatcacagtgacacatgtgccaatgagaggaggtatattgcacgaacgttgatcggtgcctgggccccactatgctttcttctactccaccactacagtaggtgataggtgacaggccgggtgtttgagtgttaaaaactgttaatgtgttaatgaggtgaggccacggtactaggcatgggaacggtaggttcccgtcgctgtaaaactttggtgattcatggtctctccacctactgtggcttttactacctagcactagctagatggaaatttagtatgttgctgctgtattttggcaatgtaaactaaattgtagattggtgaagagatcagttttgcttttttaggtgaggaagagatcaatagataactctttacgatggaccattttccgaccaatcctcatcttagcaaacctggttttacactcttgcaagtaacttctatgttacaatagttggtgcttgcttcctgcttccaccatattatgaattctatggggttggtatgaaactgtccatttgtgtcatggacccatggtcgcctggccagacaacagaaaccaacggcaagggattcaggtgtccgtggttgatgttgccgaggggcaatggctaacgtgcgtgcatctttttatgcccgaaatgccggtaggcttatcatggggcgagtttctgtgttcccagttgattgctagaatatttggcttttgaggtgaaatgtactgagatggaatctgatgccagacagaaacccatattttggtgaagttgtttagcatcgtattctcccttcgtttcctaagatatttccatgggccgtcagtgttttatatatcagatcgacaatattttagaatggtaatagtgcaagaaccgatattatagtctatttataaagattgacagtggattcatatctggttattcggttttgttttgtgcttttatagcataaccagatctagtttgtactgtagcagctaacaagtgggtctagccagatttattgttgcagcatctgggtgtttcctaaatactttttttttctgaaaaggatcgtacatattttaataaccattggaaatataagtaactcgaatctaaattttccaccgatcttaaagttattttcatcataatctttcgtacaactgaaaagctctgtatacatatattgaagtcaaaatgattgcgccaggttgccaacaccatttaatctgatgttcttttgcatgacaacaatgtagtaggaaagatagattttttaaataagtaggattaagtgttgctttcctccctgcagcttatgatcctcgtggacgatgctggcgcgtttcttccagcaattaatcactcgccatgggacggtgtaaccctggctgatttcgtcatgccctttttccttttcattgttggagtcgctctagctctagcgtacaaggtacaggatgacaaggctaagatcgtgatatttaacttcctttctgaaactaacaccgtaccagtgacacttatctgaaacctaattgcgtcacgttgtgcagagagtgccaaacaaattggaggcaaccagaaaagcaattctccgtgcactgaagctgttttgtgttggtcttgttcttcaaggtatcagttaggaaattcatgaaagctactagctacaattattgtaggaaaatatgtatttaactttctcttgcttctatattatgcaggtggattttttcatggtgttcgtagtctaactttcggaattgatatggaaaaaatacggttgatgggtatactacaggtatacggcacacgccattttataccaccaacactttctccatcaagaataaaaattatagtatataatgacgtatcttcgtggttgcagagaattgcaatagcttacattgtgaccgcgctatgtgaaatttggctcaagggagatgatgacgtagattctggatttgatctgctaaagagaaaccgttatcaactgtgagtataaaaaccaaaaccggtctaatttttttgtgctattgttcttcacgttgatgagaaattagtcctcttattcaccttaaaatatcgtccacttttgtatttccaggttcattggcctgatcgtcatgatcacatacatgggcttcttgtatggtacctacgttcctgactgggagtatcggatatccgttcctggttccacagagaaatctttctttgtaagtgacactccacctttatcttatacagtacaagtggatcaattactactaacaaggatgggaactgatgaattttaaattcaaaatctttatcaggtgaaatgcagcgtaagaggcgacactggaccaggctgcaatgctgttggcatgatagaccgcaaaatcttgggcattcaacatctgtactgtcgaccggtttacgcccgatcaaaggtactaatgaaaagcaacagcttgaatctgtgtgttcttcctcatgtacaaattcggtccataataacaactgctctctcctttgacagcaatgcagtataaattcaccacaaaatggaccacttcgtcctgatgctccttcatggtgccaggccccttttgatcctgaagggcttctcaggtcactggacccttgccatcataataaatctgtctttaactatctttcaggctacaacagtacaacatttcctttgcaaactttgctaaattctcactgttctttcttgattctcgtatcagctctgtgatggctatcgtcacctgcttgattggtctacaatacgggcatgtaatcgtacatttccaggtacagtagttcgctgatatgtcagattgatgagcgtttgattttgcagtccacattgaaaatactctgaacttctctctgttctgaatcgatttgcagaaacacaaggagagaatcatgaaatggctaatcccctccttcagcatgctaatccttgcgttctcattggacttctttggtaagtaatacattgtaatcttcaacatttcattcctaatcatcaggagcgtttgaactgaccgttatgctgatgaacctctccaggaatgcatatgaacaagccactgtacaccgtgagctacgccctcgccaccgccggcgccgcgggcctcctgttcgccggaatctacgcgctggtcgacatgtacggccaccggcggccgaccgccgtcatggagtggatggggacgcacgcgctcatgatctacgtcctgatcgcgtgcaacatcctgcccatcttcatccacggcttctactggagggagcccaagaacaaccttgtaagttttgctgcaacactgacgatgaacatcattttccagatagatttcactgcaaaataacatctcttctaacacggctacctggctggctccattttgcgcagttgaggttaatcggagttggggcatgatccatggatgcagcagctagaagcctagaaggcacgtatagaggcgtatttaggacactatttggacagagacaaacgagacatgtgcaggcctagttttgctacaggcttagttattgttgcacagattcgttctctctgagagctctttgtatatggtaaacaacgagcctgtgtatatcatgacaatacgatctaaaagaaatatatagtacagaaaaaattttc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0404900, RefSeq:Os04g0404900