Os04g0405300

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Revision as of 11:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0405300| Description = Similar to Stem secoisolariciresinol dehydrogenase (Fragment)| Version = NM_001059244.1 GI:115458217 GeneID:4335749| ...")
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Gene Name

Os04g0405300

Description

Similar to Stem secoisolariciresinol dehydrogenase (Fragment)

Version

NM_001059244.1 GI:115458217 GeneID:4335749

Length

1165 bp

Definition

Oryza sativa Japonica Group Os04g0405300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:20130550..20131714

Sequence Coding Region

20130719..20131502,20131613..20131656

Expression

GEO Profiles:Os04g0405300

Genome Context

<gbrowseImage1> name=NC_008397:20130550..20131714 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:20130550..20131714 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgggtagcagctacggcgacgttcatgagtctgcaagaaagttggtgggcaaggtggcgctgatcaccggcggcgcgagcggcatcggggagtgcacggcgcggctgttcgtgaagcacggggcgcaagtcgtggtcgccgacatccaggacgaggcgggggcgcgactgtgcgccgagctcgggagcgccaccgccagctacgtgcggtgcgacgtgacgagcgaggacgacgtcgcggccgcggtggaccacgccgtggcgaggtacgggaagctggacgtcatgttcaacaacgccgggatcggcggcgcggcgtgccacagcatcctggagagcaccaaggccgactttgaccgcgtgctggccgtgaacctgacgggcccgttcctgggcacgaagcacgcggcgcgggtgatggtggccgcggggcgcggcgggtgcatcatcgggacggcgagcctcgcgtcggcggtggccggcacggcgtcgcacgcgtacacgtgcgccaagcgcgcgctggtggggctgacggagaacgcggcggcggagctgggccgccacgggatccgcgtcaactgcgtgtcgcccgccgcggcggcgacgccgctggccacggggtacgtgggcctggagggggaggcgttcgaggccgccatggaggccgtggccaacctcaagggcgtgcgcctccgcgtggaggacatcgccgccgccgtgctgttcctcgccagcgacgacgcgcgctacgtcagcggccacaacctgctcatcgacggcggctgctccatcgtcaacccgtcctttggcatcttcaaggactga</cdnaseq>

Protein Sequence

<aaseq>MAGSSYGDVHESARKLVGKVALITGGASGIGECTARLFVKHGAQ VVVADIQDEAGARLCAELGSATASYVRCDVTSEDDVAAAVDHAVARYGKLDVMFNNAG IGGAACHSILESTKADFDRVLAVNLTGPFLGTKHAARVMVAAGRGGCIIGTASLASAV AGTASHAYTCAKRALVGLTENAAAELGRHGIRVNCVSPAAAATPLATGYVGLEGEAFE AAMEAVANLKGVRLRVEDIAAAVLFLASDDARYVSGHNLLIDGGCSIVNPSFGIFKD</aaseq>

Gene Sequence

<dnaseqindica>213..996#59..102#aacttactcagagagtcgcagatcgagagagctaacgatttctcatctcgcggtggccatggcgggtagcagctacggcgacgttcatgagtctgcaagaaagtgagatcacaacggtttaattttttttcccgcgtgttgtgtgcgatgcatgagcttgtcggtgatcttacacgtaactctgccatgttatcgtgtgtacgttggtgtaggttggtgggcaaggtggcgctgatcaccggcggcgcgagcggcatcggggagtgcacggcgcggctgttcgtgaagcacggggcgcaagtcgtggtcgccgacatccaggacgaggcgggggcgcgactgtgcgccgagctcgggagcgccaccgccagctacgtgcggtgcgacgtgacgagcgaggacgacgtcgcggccgcggtggaccacgccgtggcgaggtacgggaagctggacgtcatgttcaacaacgccgggatcggcggcgcggcgtgccacagcatcctggagagcaccaaggccgactttgaccgcgtgctggccgtgaacctgacgggcccgttcctgggcacgaagcacgcggcgcgggtgatggtggccgcggggcgcggcgggtgcatcatcgggacggcgagcctcgcgtcggcggtggccggcacggcgtcgcacgcgtacacgtgcgccaagcgcgcgctggtggggctgacggagaacgcggcggcggagctgggccgccacgggatccgcgtcaactgcgtgtcgcccgccgcggcggcgacgccgctggccacggggtacgtgggcctggagggggaggcgttcgaggccgccatggaggccgtggccaacctcaagggcgtgcgcctccgcgtggaggacatcgccgccgccgtgctgttcctcgccagcgacgacgcgcgctacgtcagcggccacaacctgctcatcgacggcggctgctccatcgtcaacccgtcctttggcatcttcaaggactgagacgatcgatcggctggccatgcattgacaaagatcgatcgacgctgtcacgttaggcttgtgtcacgatcgacgctgtcacagtttatgtttgacttatgttcttaatttttttaaaaaataaattttaaaaggatggacgattaaaattgaacacgaaaatttatat</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0405300, RefSeq:Os04g0405300