Os04g0409200

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Revision as of 11:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0409200| Description = Similar to Amylose extender starch-branching enzyme (Fragment)| Version = NM_001059258.2 GI:297602673 GeneID:4335763|...")
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Gene Name

Os04g0409200

Description

Similar to Amylose extender starch-branching enzyme (Fragment)

Version

NM_001059258.2 GI:297602673 GeneID:4335763

Length

4513 bp

Definition

Oryza sativa Japonica Group Os04g0409200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:20260837..20265349

Sequence Coding Region

20260837..20260941,20262534..20262617,20262803..20262919,20263015..20263095,20263679..20263738
,20263878..20263920,20264015..20264113,20264376..20264647,20264881..20265002
,20265337..20265349

Expression

GEO Profiles:Os04g0409200

Genome Context

<gbrowseImage1> name=NC_008397:20260837..20265349 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:20260837..20265349 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggaagagaaggtggcgttgtgagctgcgcgggtgctcctgggaaggtgctggtgcctggcggtgggagcgacgacttgctgtcctctgcggaaccagacgtggaaactcaagagcaacctgaagaatctcagatacctgatgataataaagtaaaaccttttgaggaggaggaagagattccagcagtggcagaagcaagcataaaggttgtggctgaagacaaacttgaatcttcagaagtgattcaagacattgaggaaaatgtgactgagggtgtgatcaaagatgctgatgaaccaactgtggaggataaaccacgagttatcccaccaccaggagatgggcagaagatataccaaattgacccaatgctggaaggatttcggaaccatcttgactaccgatacagtgaatacaagagaatgcgtgcagctattgaccaacatgaaggtggcttggatgcattttctcgtggttacgaaaagcttggattcacccgcagcgctgaaggcattacctaccgagaatgggcacctggagcacagtctgcagcattagtaggtgacttcaacaattggaacccaaatgcagatactatgaccagaaatgagtatggtgtttgggagatttccctgcctaacaatgctgatggatcccctgctattcctcatggctcacgtgtaaagattcggatggatacaccatctggcgtaaaggattctattcctgcctggattaagtttgctgtgcaggctccaggtgaaataccgtacaacggtatatattatgatccacctgaagaagaaaaatatgtattccaacatcctcaacctaaacgaccaaattcgctgcggatatatgaatcacatattggaatgagtagcccgcagtacagcactttctgcaagggccattcccagactgcagtgtcctgcaagaaccattcctggagaaacaatgacctgaactgccagaaatgctcccaattgtaa</cdnaseq>

Protein Sequence

<aaseq>MGREGGVVSCAGAPGKVLVPGGGSDDLLSSAEPDVETQEQPEES QIPDDNKVKPFEEEEEIPAVAEASIKVVAEDKLESSEVIQDIEENVTEGVIKDADEPT VEDKPRVIPPPGDGQKIYQIDPMLEGFRNHLDYRYSEYKRMRAAIDQHEGGLDAFSRG YEKLGFTRSAEGITYREWAPGAQSAALVGDFNNWNPNADTMTRNEYGVWEISLPNNAD GSPAIPHGSRVKIRMDTPSGVKDSIPAWIKFAVQAPGEIPYNGIYYDPPEEEKYVFQH PQPKRPNSLRIYESHIGMSSPQYSTFCKGHSQTAVSCKNHSWRNNDLNCQKCSQL</aaseq>

Gene Sequence

<dnaseqindica>4409..4513#2733..2816#2431..2547#2255..2335#1612..1671#1430..1472#1237..1335#703..974#348..469#1..13#atgggaagagaaggtctcctgatcgattgcagctcacagcctcgcgggcatgcgttattcctcccattttactgttatctctcgatccgtatgtgatgtgtgtgtgcactttgttgggtacttgggtgcaccgaagcgatcactgtttctgaattctgagaaccagagtttatttttttcttgccggataagatgagttagtgttacaaatcgctgtgatcattctctaattcctttttatgtttcgttttgaggctgatgcagatgatctcttatttattgttgcaacttgcaagtgggggtggtatggcgttgcctgactagtagagtcggctttgcatttgcaggtggcgttgtgagctgcgcgggtgctcctgggaaggtgctggtgcctggcggtgggagcgacgacttgctgtcctctgcggaaccagacgtggaaactcaagagcaacctgaagaatctcaggtaatgccgggaataaaattcgagctgttgtcattcactgaccaaatgtgtgatgaaatgatgtagtggcaatgccaggtttcatgtgttttgtgcattgtgaccttgtgctggctgttgggctactgaaaaccaagttgggtcttccaactagcaactttgccacaaaagaatgtacctttttttctttttgggtgtctcatgcagagtctatccatctatgttctgtgtagatacctgatgataataaagtaaaaccttttgaggaggaggaagagattccagcagtggcagaagcaagcataaaggttgtggctgaagacaaacttgaatcttcagaagtgattcaagacattgaggaaaatgtgactgagggtgtgatcaaagatgctgatgaaccaactgtggaggataaaccacgagttatcccaccaccaggagatgggcagaagatataccaaattgacccaatgctggaaggatttcggaaccatcttgactaccggttagttatttactttttttcattttgattaaggttggtataatatttgaaaatagaggtgatatctcacaaatgcaatacaaatcattggcactgatcactagagataccaaaaaggatgtggcaagtagtctgcatagtttaatcccctcacttctctgtcaactcagcaaattaatttctgatatctggcgcttttgttgggaaacctactctgttaacttcagtatatcttttttggtatgcatggtggtatgaacagatacagtgaatacaagagaatgcgtgcagctattgaccaacatgaaggtggcttggatgcattttctcgtggttacgaaaagcttggattcacccgcaggtaaaattaaagtcgcattactacagaaatgcctacaatattctacttggatatcaaatgatcaaactcaatatcattattccgtcctttccagcgctgaaggcattacctaccgagaatgggcacctggagcacaggtacgtgatttggcagtggtcactactccctatccagtgtactggaattataccagtagcacaaatgatatattgatgaacttcttttcaaacagtcatcacattaagaattaaaaatgacattttcatcctattgcagtctgcagcattagtaggtgacttcaacaattggaacccaaatgcagatactatgaccagagtacgtcttcaacctttttattttccatctttgtattgtatcattaatatattttcaattatctgggttcattatttctgtttatattccttaaagttgaacctcacgtgtgtcattctaaaatgctgctactctatattgtctcaaagtcagtgaaaacagagcactgttccttactttactaactatcatcttctttgagtccaaaatagcagaattcatgtttagggtaaacagtaaacacatgcatgcaattttgcatcctaatggttaatatagccttttggggtgtgtttggaaaatgggttaggagaggtgggattgggaaatggaaatgaatggagggataggatgaaatgggtgaaatgaatggatggctaagatcaaaacttaccctttgggggtgggaaatcatatcccaaacccattttccaaacatcgccttgaattttgtacacttccatccacactggtttattatatgacatgagaagggtgtatttcgcagcatacgagcctatttacatgtgccagcaacgttttttctcttattagtgttgatatatggcatgatcactttcagaatgagtatggtgtttgggagatttccctgcctaacaatgctgatggatcccctgctattcctcatggctcacgtgtaaaggtaagttttctgattggctatttacttagttgagggtttaatcattttcaaaatgagcttactgagagatcttctttcaccttcttaatttccagattcggatggatacaccatctggcgtaaaggattctattcctgcctggattaagtttgctgtgcaggctccaggtgaaataccgtacaacggtatatattatgatccacctgaagaagtatgtttctaccttacagtctttccacgaaatatttttcccttgcattttttttaaaaaaatctatgctcgtgtcactaaaaccttatagaactgtgtaatactactttttttctttgttgatcaggatattccattttaacctttattttccatctcctaatgttgtttatacgcaactgcaggaaaaatatgtattccaacatcctcaacctaaacgaccaaattcgctgcggatatatgaatcacatattggaatgagtagcccggtatgccnataagttattaatattttgacttttcttttttgtcttgaaacctttttcgctttgtagaatgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgagaaactcaaatcggctccaaatttaaagctgaaaaataaattttgactgataagcataagcataaacgaaaagatgggactctaggtcttttacattttcacaaatagatccttggcgtcaatgatattggtgatttggtaccgtcccctatcacattaggccattcccaacccaataactaggatggtgtacatagcattaaataagctatcacataggatgaaaaatgatgtggcaagtgaataatgaggaaagagaaggaaaccatgtcttgcattgagacatggtttctacacaacgtccaagacattagtgagataagtagcattaaatttaagtatggaatattggtgtttgcattggaagaatagtgtctagtactagtttcttgatgatgtggagtttatgaaaattatgtctaatgttttagattgggaatggccttagcgacttagctttcactagagacagggggggacggcgccaacatcattggtgcaccaatgatattggcggcacgaaaagggtgtattcttggaataagttttttaagatctatttgttaaataagtttttcaaaatgatcaaggggtgaggaatccatttctcaaaaaaaaaagtgaaaaatacagcattgaattgttcagatcaatctcccgagaacttgcccaccgtagcaaccccagccttcatggcgtattcttcggtgtctctctaacggctactgttgttcattgtcatccaaccatttcttccatccatgacaccctcactacacttaatgaaagccaatcttggagggtctccgtggtttcctcgccgttgtcaagatcgctagagtaggagcgatttgtttcaccttcttcaatggcctttttgtacggtgattaggtgatagtagtccagtacccggaagaatggaacagaaagaaacactctcatcgcttgtatcacctttctgtgtgtgtggatgcactagttaattaaccgggtccatgtggcccgtctcattatagtatctatccctctcatcaagagccaaccaaccgcagctagttgttatataagcaaatgctcatcattccctgccttcctggagcgtaattaaatgttattaggactagtatgttgttagccttttgggacttaggactgcaatccatggcccatttcggactccaccaaccaagaattaatagaactactctaatcaacttcatgctagctgaacgccagtgacctaccagccaacatgagctgatcatattagcttggccaataactaggatgtgatcattctggacttctggtgacagcagtacagcactttctgcaagggccattcccagactgcagtgtcctgcaagaaccattcctggagaaacaatgacctgaactgccagaaatgctcccaattgtaa</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0409200, RefSeq:Os04g0409200