Os04g0429100

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Revision as of 11:09, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0429100| Description = Similar to SET domain-containing protein SET102| Version = NM_001059342.1 GI:115458413 GeneID:4335856| Length = 4764...")
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Gene Name

Os04g0429100

Description

Similar to SET domain-containing protein SET102

Version

NM_001059342.1 GI:115458413 GeneID:4335856

Length

4764 bp

Definition

Oryza sativa Japonica Group Os04g0429100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:21280280..21285043

Sequence Coding Region

21280280..21280564,21280650..21280723,21280815..21280971,21281430..21281516,21281615..21281699
,21282686..21282779,21282917..21283115,21283391..21283425,21283952..21284507
,21284598..21284864

Expression

GEO Profiles:Os04g0429100

Genome Context

<gbrowseImage1> name=NC_008397:21280280..21285043 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:21280280..21285043 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>agccgaatccgtctttcctctcctcctcctcctcctcctccgaccaccggccagccggcgaagtcctccgccgcggagctcacctcctccggcgccggcgacgcccccctcggtagccccggggaggacgcctttcctccggcgaccacttccccagtcgccgcctccgccgctcctcgaaccactcacgcgccgcgcgggctcctgtcccaggctatcagccgcgatttccctacccctctcgccggatacctcgccgccgtccaagagctagcgtctctgatggaggaagagcgcatggagccgccgccgccgccgccgtacatccacatcgagaccaacgatttcttgcacaggaggcacaagaggcagaaagaggaggacatagctgtgtgtgagtgccagtataatctgctggatccggacagcgcgtgcggggatcggtgcttgaacgtcttgactagcacggagtgtacgcctggatactgcctctgcggtgtatactgcaagaaccagcgatttcaaaaaagccaatatgctgcgacaaggctggtaaaaactgaagggcgtggatggggccttttggctgatgagaatattatggctggacaatttgttatggaatattgtggagaagtaatatcatggaaggaagccaagaggagatctcaagcatatgaaaaccagggtttaacggatgcctatattatctatctgaatgctgatgagtctatcgacgcaacaaagaaggggagcctggcaagattcatcaaccattcgtgccaaccaaactgtgagacaaggaaatggaatgttcttggggaagtaagagtgggaatttttgcgaaacaagatattccaatcggaacggaactatcctatgactacaactttgagtggtttggtggtgcaatggtgaggtgcctttgtggagctggcagctgttctggatttcttggggctaaatcacgtggtttccaggaggctacatacctgtgggaagatgatgatgacaggttttctgttgagaatgttcccctttatgattctgctgatgatgaacctaccagcattccaaaggacatcttaataaaagatgagccaaatacacaggatggcaacaacaacacaatccaaaatactgggattcctattattgcaagttcaagtgaattcacaccgatgaatgttgaaccatcgattgcgagttcaaatgagttcacaccgatgaatgttgaaccattgaatgtgagctcaaatgaattgacaccaatgactattgaaccattgaatgctattccaatgggagttgattttactcagaatggatcaattgaatatggtgcgcaatgtgctgaagatgctctgcaaaactcaacgcgtggagttgcaaacctccagaatcaaagtgcgccccgggacaacaaccatacagagttggttgcggtgaaacgtagacccacacttcgtggtggaaaagctaaacgtggtatgcgcaagcaactgaatgttgtgggtatctgtgatcggttagcatcagaggtggcacgtgaagaaatattgtattgcgaggaaatgaagaatgaagctgctgctgaaattgacagcctgtacgacgagataaggccggcgatcgaagagcatgagagggatagtcaagacagcgtggccacaagccttgcagagaagtggattgaggctagctgctgcaagtacaaagctgattttgatctgtatgcttccattatcaagaatcttgcttccacacctctaagatcaaaagaagacgcggcccctacagagcaaaatggattgatgtacttggaaaacggtccatga</cdnaseq>

Protein Sequence

<aaseq>SRIRLSSPPPPPPPTTGQPAKSSAAELTSSGAGDAPLGSPGEDA FPPATTSPVAASAAPRTTHAPRGLLSQAISRDFPTPLAGYLAAVQELASLMEEERMEP PPPPPYIHIETNDFLHRRHKRQKEEDIAVCECQYNLLDPDSACGDRCLNVLTSTECTP GYCLCGVYCKNQRFQKSQYAATRLVKTEGRGWGLLADENIMAGQFVMEYCGEVISWKE AKRRSQAYENQGLTDAYIIYLNADESIDATKKGSLARFINHSCQPNCETRKWNVLGEV RVGIFAKQDIPIGTELSYDYNFEWFGGAMVRCLCGAGSCSGFLGAKSRGFQEATYLWE DDDDRFSVENVPLYDSADDEPTSIPKDILIKDEPNTQDGNNNTIQNTGIPIIASSSEF TPMNVEPSIASSNEFTPMNVEPLNVSSNELTPMTIEPLNAIPMGVDFTQNGSIEYGAQ CAEDALQNSTRGVANLQNQSAPRDNNHTELVAVKRRPTLRGGKAKRGMRKQLNVVGIC DRLASEVAREEILYCEEMKNEAAAEIDSLYDEIRPAIEEHERDSQDSVATSLAEKWIE ASCCKYKADFDLYASIIKNLASTPLRSKEDAAPTEQNGLMYLENGP</aaseq>

Gene Sequence

<dnaseqindica>1..285#371..444#536..692#1151..1237#1336..1420#2407..2500#2638..2836#3112..3146#3673..4228#4319..4585#agccgaatccgtctttcctctcctcctcctcctcctcctccgaccaccggccagccggcgaagtcctccgccgcggagctcacctcctccggcgccggcgacgcccccctcggtagccccggggaggacgcctttcctccggcgaccacttccccagtcgccgcctccgccgctcctcgaaccactcacgcgccgcgcgggctcctgtcccaggctatcagccgcgatttccctacccctctcgccggatacctcgccgccgtccaagagctagcgtctctgatggtaacttctctgtgagctcgctcgctcgctcgtagagattcctgattctgtatgattgagctccccgggctgttcggttttgcaggaggaagagcgcatggagccgccgccgccgccgccgtacatccacatcgagaccaacgatttcttgcacaggaggtgagtgagtttcacggcgatgtgggacaacggctgcgtcctgtgcttttggatgtaatgcgaatctttatactttggtgcgcgatgctaggcacaagaggcagaaagaggaggacatagctgtgtgtgagtgccagtataatctgctggatccggacagcgcgtgcggggatcggtgcttgaacgtcttgactagcacggagtgtacgcctggatactgcctctgcggtgtatactgcaagaaccaggttggtgtttctcttgttcaagtagtagcgcaaccgttccaaatcttgattgaatgaatatccatacatttgttcttacatgattactttagttcactcgagcctagttactaggcaggaggggaaaaaaatggtgtaacacggttattttgctttcttgtcttcttgattgaatataatccagtttattatagatgtacagcaattttcaatatagtcgtgctggctcttagctgtaaggattttttttcaagtgagattgaatataatctggtttcttatacatgatgtaccattatttctaatatatagttttactaattttctatagataccgaacactatcattttcaatatatagttttaccaatttgctagggaggccgaatgtcatctggagtgctttacagtttcactggtagttatgtttgtattttaatcaatttctctgttggcagcgatttcaaaaaagccaatatgctgcgacaaggctggtaaaaactgaagggcgtggatggggccttttggctgatgagaatattatggtgactgaatttaccttgattttatggtctgctaatgttgttaaatatattcaagtgagtatgctttagtgagtcattgttttcttaatggtttttaggctggacaatttgttatggaatattgtggagaagtaatatcatggaaggaagccaagaggagatctcaagcatatgaaaaccagggtctgttgattttatcttccctcaatgttagcatggtggtacattttggctagggatggcaaccgggccatccccggcggggtgtggtcccccgtccccgtccccgtccccgtgcagttagaaatcacccgcccccgtccccggtgtcggggctgtatttctcccgtccccaagcctcgccgggtgcacggggcacccacggggtcgcacacccgataaactcgtgggcataaatcaacaagaaggttctctagtaggaaggtagaagtagaacagatcggcaaaaatagcacgaggacatacatctatcattttctcagattatgaacatgaccatggtgccagacttgcatgattctgttgccaagaatcagctccaacttccatcaaaatgagaaaaataaacagcgacaaacaggacagagcagaaaataacaagcaaagtatataccggcattcggatgcagcaagtgcccgtcctcttgctttcccgcatgagcaagcgacttggaggcagaacaacagctcgcgcggcatggtcaccttatgcggcggcggggtgctatatcgctgctgtggcctggaggaggtgcgatggctggcgcccttgccgacctcgactggcggctgctgatggatctgagaaggggacaagggaggactggtctagtgtagggtttcttttgctttatataccagcacctctaaattgggcactaagtgggcttttaacttttatggactgtacatatgcctacactactcgagtcacccacggggattcggggccgggtgcctatggaacatccccgtccccgcatcacccaacggtgacagtttctagccgataacagccccatgggtgatgaatttagcctgtttacataccctaatagagtttttacctatcgggtatcggggttcgggtccccattgccatccctaattttggctagctataacatttgttttttgtgccctgttaggtttaacggatgcctatattatctatctgaatgctgatgagtctatcgacgcaacaaagaaggggagcctggcaagattcatcaaccattcgtggtatgtcttgtagcaaatatatgtctgcctatattatgtttctttcatatgcattatttgataattgattatcgagtttttttccatttactagcatttaatgattaaatctgatagcttgttattgaagcatgcagccaaccaaactgtgagacaaggaaatggaatgttcttggggaagtaagagtgggaatttttgcgaaacaagatattccaatcggaacggaactatcctatgactacaactttgagtggtttggtggtgcaatggtgaggtgcctttgtggagctggcagctgttctggatttcttggggctaaatcacgtggtttccaggtaaaaagttgttgtgtgatatgtcttgtaacctgaaaagcaccattttataagtaggattttcccttgcacatgtgctggcataattcttctgcatttctctcttaccatgagtgctgaagtacaggttacatgcacagtcgcttcataaattgttaatttatataggagtagttacaaattggttacattttcagtgtttattttcatttttacattccttttagaatgcccatcgcttatgtaatgaatgctacatttttgccatgttttaggaggctacatacctgtgggaagatgatgatgacaggtaggattgtgcttgtacttacctatccaatctgctgaataaaatattgtctattcaaatggtcccaggaagttatatgtggtaacttctgtaattggatggttttacttagcagtgacctttctctgttattccctcagtcccaaaatataataacttaggatcagatggggacgtttcctagtactacaaatctggacaggaaacgtcccatccgatcctaggttgttatattttaggacggagggagcagttaagacaaataggaaaaaagaagcaattaaacagcatgttaacataactactattatgtcttgctttattatcttctcagatccatattactgtcatgtcttgcattatcatcatagaagaagatcctagttggttaaaaatatgcagatttgtgttgcctgggtcaacctgtcatttcaaacaaagcctgaatttcttgaaatgccgaaatatcgacggatacaacaaatctgagcaccggttaacatatgctttccatcttaaattgcaggttttctgttgagaatgttcccctttatgattctgctgatgatgaacctaccagcattccaaaggacatcttaataaaagatgagccaaatacacaggatggcaacaacaacacaatccaaaatactgggattcctattattgcaagttcaagtgaattcacaccgatgaatgttgaaccatcgattgcgagttcaaatgagttcacaccgatgaatgttgaaccattgaatgtgagctcaaatgaattgacaccaatgactattgaaccattgaatgctattccaatgggagttgattttactcagaatggatcaattgaatatggtgcgcaatgtgctgaagatgctctgcaaaactcaacgcgtggagttgcaaacctccagaatcaaagtgcgccccgggacaacaaccatacagagttggttgcggtgaaacgtagacccacacttcgtggtggaaaagctaaacgtggtatgcgcaagcaactgaatgttgtgggtatctgtgatcggttagcatcagaggtggcacgtgaagaaatattgtattgcgaggtaaagaactactgtaactccctttttattgaacattgctctaggaaagcttaggctttgcaatgaccttttttccaaatcaaatgtcaggaaatgaagaatgaagctgctgctgaaattgacagcctgtacgacgagataaggccggcgatcgaagagcatgagagggatagtcaagacagcgtggccacaagccttgcagagaagtggattgaggctagctgctgcaagtacaaagctgattttgatctgtatgcttccattatcaagaatcttgcttccacacctctaagatcaaaagaagacgcggcccctacagagcaaaatggattgatgtacttggaaaacggtccatgaaccgatttacaaattggacttgtaaaagctagaaaaaggctagagattgattgtcagacatagttgaggtttaggggattatcttccctgatacaatttggttaagaaaattatgcaaggtcatatttttcttattgcaaataccattaacgtgagtatgtttactcatggaaaccctg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0429100, RefSeq:Os04g0429100