Os04g0435700

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Revision as of 11:10, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0435700| Description = Similar to UVB-resistance protein UVR8| Version = NM_001059384.1 GI:115458497 GeneID:4335903| Length = 5510 bp| Def...")
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Gene Name

Os04g0435700

Description

Similar to UVB-resistance protein UVR8

Version

NM_001059384.1 GI:115458497 GeneID:4335903

Length

5510 bp

Definition

Oryza sativa Japonica Group Os04g0435700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:21704833..21710342

Sequence Coding Region

21705175..21705289,21705400..21705739,21706220..21706301,21706781..21706936,21708047..21708220
,21708361..21708432,21709165..21709236,21709349..21709467,21709568..21709653
,21709743..21709795,21709934..21710026

Expression

GEO Profiles:Os04g0435700

Genome Context

<gbrowseImage1> name=NC_008397:21704833..21710342 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:21704833..21710342 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgcggtcatgtccgccgccgacgacgcgggcgcggcgtccggccgggaggacccaccgccagccgtggtgctcgtctccgccggcgccagccactccgtcgcgctcctcgcgggcaatgtgctgtgctcgtgggggagaggggaggacgggcagctcgggcacggggacgcggaggaccggctggtgccgacggtgctgagcggcttcgacgccgccgcgccggggatcacgtcggtcatctgcggcgccgaccacaccaccgcctactccgaggacgagcagcaggtgtacagctggggctggggagacttcgggaggctcggccatggcaactccagcgacgtgttcactcctcagccagtcaaggccctgcaggggataaagatcaagcagatagcttgcggcgatagccattgtcttgccgtcactatggcaggtgaagtgcaaagttgggggcgcaaccaaaacggacagcttggtcttggaaccactgaagactcattgctcccacaaaagattcaatcttttgagggagtttgtgtgaaaatgattgctgctggtgctgaacataccgctgcagtaactgaagatggtgacctctatggatggggctggggtcgatatggaaacttggggcttggtgatcgcaatgatcggttggtacctgagaaagtatcttctgtggagggagagaagatggtgcttattgcatgtggatggcgccatacaattactgtttcttcctctggtagtttgtatacttatggttggagcaaatatggtcaactagggcatggtgattttgaagatcatttagttccacataaactagaggccttaaaggatagctctatatcgcagatttcaggtggatggaggcatacaatggcgcttacatcagatggaaagctttatggttgggggtggaacaagtttgggcaagtcggagttggtgatactgatgatcactgtttcccagtacaggtcaagtttccagaggatcagaaagttgcccaagttgcttgcgggtggaggcatactcttgcatttacagaaaagaaaaatgttttctcatgggggaggggtactagcggacaacttggtcatggtgaaatagttgacaggaacaaacctgtgatgattgatgccttaagcccggatggtcctggctgcaagaaattagagccatcaacagctgtaccatttgcagccaaagtctgggtctcgccatcagaaagatatgccattgttcctgatgaaaaagttccaaattcaggtgaaggcacggcacgaggcaacggggcggacgcaaatgtaccagagaacgatgtaaagaggatgcgtgtgcattcgtag</cdnaseq>

Protein Sequence

<aaseq>MDAVMSAADDAGAASGREDPPPAVVLVSAGASHSVALLAGNVLC SWGRGEDGQLGHGDAEDRLVPTVLSGFDAAAPGITSVICGADHTTAYSEDEQQVYSWG WGDFGRLGHGNSSDVFTPQPVKALQGIKIKQIACGDSHCLAVTMAGEVQSWGRNQNGQ LGLGTTEDSLLPQKIQSFEGVCVKMIAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR NDRLVPEKVSSVEGEKMVLIACGWRHTITVSSSGSLYTYGWSKYGQLGHGDFEDHLVP HKLEALKDSSISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGDTDDHCFPVQVKFP EDQKVAQVACGWRHTLAFTEKKNVFSWGRGTSGQLGHGEIVDRNKPVMIDALSPDGPG CKKLEPSTAVPFAAKVWVSPSERYAIVPDEKVPNSGEGTARGNGADANVPENDVKRMR VHS</aaseq>

Gene Sequence

<dnaseqindica>343..457#568..907#1388..1469#1949..2104#3215..3388#3529..3600#4333..4404#4517..4635#4736..4821#4911..4963#5102..5194#accgggcttaagccgctgggggcggagaggcaggcaggcaggcagtgcgccattagcgtcacatggggtgggctcttgtacactagccattaatacggcaggtcgcccatcccatcgcgtctcctccgcttaaatccccgcggctccctcctgtccgtggttgcagctcgctcgccgcgctagagcttagctccgccgccgccgccgccgccatcgccggtcgagctagctctttttggtagtgtagctaaggctagcaagaggccgggagcgcgggtggtgtggccgcggattatctgggtgcttgcttgtgcctccggatcggccgggggtgatcgaggcatggacgcggtcatgtccgccgccgacgacgcgggcgcggcgtccggccgggaggacccaccgccagccgtggtgctcgtctccgccggcgccagccactccgtcgcgctcctcggtaagcgtccttcggggcgggggaagcatttcgtcgaacgccttgccggcgcttctatctaagcgggcgtttgcctttttcttttctttttcttttttcccgttttgcagcgggcaatgtgctgtgctcgtgggggagaggggaggacgggcagctcgggcacggggacgcggaggaccggctggtgccgacggtgctgagcggcttcgacgccgccgcgccggggatcacgtcggtcatctgcggcgccgaccacaccaccgcctactccgaggacgagcagcaggtgtacagctggggctggggagacttcgggaggctcggccatggcaactccagcgacgtgttcactcctcagccagtcaaggccctgcaggggataaagatcaagcagatagcttgcggcgatagccattgtcttgccgtcactatggcaggtgaagtgcaaaggtgagtgaagatcgctgtaaacagccatctgcccatactatttactgtatataactccaggattgtatagtatggttgtcatgtgatcttgtttaaagctgcttatcagcaaccaaaacataatttatgggtaaagcttttatagttattatgtccttagtgatttaaaagtcaatgctaaaaaataaggcatgatgagaaaaaaaaatcccaaaatctacttcaaaattaaattttaaaattcaaatttagaagccgcagggcaagtgatgggatgcagctgctggcaacttttataaatgatgtttttgtttttctatattaccagaaggatgatctgggaattcgaagggttgtgcatatttttttttggatgaatattgaatagtggcaaattcttacattattctgttgtgttgcgatttctgagttttgggtgactgctgtttgcactgatcttctcatgactttttgttttagttgggggcgcaaccaaaacggacagcttggtcttggaaccactgaagactcattgctcccacaaaagattcaatcttttgaggtagaatattgtgtatcatattcatataattatacatattagaatgttgtgtatcatataattatgtatatcataaaaaggatagttttagtactacctcaccgtttattgatatttgtgcatggaaatagtatacgaatacattgtgctaaggaagagtgtcatgtgaaaatcactggtatggtggcatccattacgcagtctagtgcaaatctttggtcatccctgtacttattaactaaattttgtactccatatcatgaggtggactgcaggtgtagatcctctcacgttattgtaacagttttactctccaatatagacagcacccagagacaataaataatatgttcatgtaataataatctgaacatcctggcccacttattacgtgttgcttcaaagagaaggaagatggataacttttagattttctcaatacactatgcactgttgctaatggtctaacatatgtatagggagtttgtgtgaaaatgattgctgctggtgctgaacataccgctgcagtaactgaagatggtgacctctatggatggggctggggtcgatatggaaacttggggcttggtgatcgcaatgatcggttggtacctgagaaagtatcttctgtggaggtaaatattctaacaagcttgcccttcgcatcccctcctttcaaattccttcaatatttaattcattaaaaaggaatattccatccaatttccagaatatgtttttgaagattccatccctatatgctactggactgtattgtcagtcagtcaccatatcactgttatcatagagttaagaatgagttgaaggagacaagatccttttattttgtcagtcattttctcaatacactattaaaaaacaagatatttcctacatagttcagagcatcctgtattttgttatcaccttatattccaaagcattattagaatcagaacacctaagccaatcattttcttatgtggaattcaatggaatacaatatggtcctagagtcaattaattgaagctagatacactcatctacttatccagtagtgatttatccttggaaactctaatcataggttgctagtattatcaccttttatggttttcgcaaaggaaaggcacttgtactaatcagggacagggaaactgctggggagtggctggtcacaggccaagaaaccaaaaccagctggttctggttttccaacacccttcaaggccaccattctccacccaaacctccacatctcttaaccacattatcatgaactataccaaaatgcttagaaatgattgtaggtcatatcactaacatcgaattgaaacttgagaagaacagagagagccaaattatttccatgcatatcagaacttgtcggttctcattttcaatccaaaaatgttttctgctcctactgtcatccaagtattgagccagagtgtattagctgatttgtcaattggaagttgtcactgagctgcacatgtgcaaaatggtttataactgatctattttatttataaattgatcaaaccacaaggatctatttctgtgaaataaattgtagatacacttctctgaagtttcatattataatatcttgaattattatgggcttatgtctgctgccatgtggttcatttgatcctctttttcgtatgcattttgatagttttatctttgtttttgtgtttccatgtttgttgtcgtcttattatttgatcttttgtagggagagaagatggtgcttattgcatgtggatggcgccatacaattactgtttcttcctctggtagtttgtatacttatggttggagcaaatatggtcaactagggcatggtgattttgaagatcatttagttccacataaactagaggccttaaaggatagctctatatcgcaggtacactcgctagcactaacaatattctgggaactatgctgaagttcttggcctgtttcctctgatgattgtcagtatatatttgcccttttctcttggaatttcacacgtcttatttacaaagtattctactaatttagatttcaggtggatggaggcatacaatggcgcttacatcagatggaaagctttatggttgggggtggaacaaggtaggtcattatctatgtgcctctacttatatttttgtcccaggtttattgtcttgttagaaatcaactgcacgatcaaagccttccaatttcatggttttattgattctatagcctggtgcctataaaagaaaatgagaaattctaagaatcttgtatgcacttgtgtagtttctcttccatggtgaataaatgtcatgatgattggaaatctcttaacaaacaaaagaagacgaacaatattttctcccgaacttaacaagctgagtttcaaccttcgggatatcaacactttttttctttctgtgagcatcatgggcctcttggcaaatcatgcacccatttcgacttccaccagtaccatccactgcgagtccattgtctaagggactaaaagacgcttcatgctccccaaacccccctgctatcatccaccccagacctgatgctgacttgtgccaactaactggaaacattttgtggcattcttttacaagtcaattttgaggtaacgtgagttacgtgattagtgataagctcaggttgtctttatcactaagcatagctctgatttgtatacggagcctagcttgcttgagttccagttctaccggctgcagtcctagatataccatcagtttgacatataatgtttcaaaaatgtttactttcttttgaactggtaatttaccattgtttttactgattctacctcatacttcggatatgcagtttgggcaagtcggagttggtgatactgatgatcactgtttcccagtacaggtcaagtttccagaggatcaggtatggcatatatctggaggaataaatgaactattgaagcatacaagtcataatcacaatatttatgctcaatcaagaacttgatgttccatttcttgtgttgttgctgcagaaagttgcccaagttgcttgcgggtggaggcatactcttgcatttacagaaaagaaaaatgttttctcatgggggaggggtactagcggacaacttggtcatggtgaaatagttgacaggtgtttcctatcaatatttctgtacccataatatcttgctcccaaaatgaatcatttttggtcttctgtaaattaacaatctaccattctgaatctgaaggaacaaacctgtgatgattgatgccttaagcccggatggtcctggctgcaagaaattagagccatcaacagctgtaccatttgcaggttggtcccaacgtgttctagctattgcagcttgccagcttgcagatactagcagttgcatgactaatggtgctttctgctgttttcagccaaagtctgggtctcgccatcagaaagatatgccattgttcctgatgaaaaagtgagttcctttgtgtacttgaagccctttattctcccacaagaacacgaacagttaaaatcaaaccattacacggcacttataatctgatactatactagaactgttactgaagttcttttccttctttacctgtaggttccaaattcaggtgaaggcacggcacgaggcaacggggcggacgcaaatgtaccagagaacgatgtaaagaggatgcgtgtgcattcgtaggggcctggacctcccaatttaactccctagtacactatccaaaaaccccctatgtgcaactgtttcaccgcacgtttccatccagtgctgtcccatttttgtgcatcccattctgcccaagtgatgatttccacgaacccctcctggtgttgttgagatccagtacctattagggttatcgcagctgccactgtctgtaatcgatcacctgcttagaggtgattttagcaaaaaaccaacctgcaccgttgtggacatgtgtttggaatgtttttaacttctgttggaagatgcaataagtgcttggttctgatct</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0435700, RefSeq:Os04g0435700