Os04g0439900

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Revision as of 11:10, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0439900| Description = Similar to Translocon Tic40 precursor| Version = NM_001059406.1 GI:115458541 GeneID:4335926| Length = 5939 bp| Defi...")
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Gene Name

Os04g0439900

Description

Similar to Translocon Tic40 precursor

Version

NM_001059406.1 GI:115458541 GeneID:4335926

Length

5939 bp

Definition

Oryza sativa Japonica Group Os04g0439900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:21909219..21915157

Sequence Coding Region

21909740..21909793,21909904..21909951,21910027..21910130,21910600..21910697,21911369..21911414
,21911508..21911548,21911814..21911892,21912015..21912078,21912152..21912270
,21912410..21912662,21913972..21913989,21914077..21914134,21914215..21914329
,21914839..21915031

Expression

GEO Profiles:Os04g0439900

Genome Context

<gbrowseImage1> name=NC_008397:21909219..21915157 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:21909219..21915157 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagagcctggtcctcgcctcctcctgctccgcttctccccgcctgcctcccctctccgcggcccgccgccgccgcccctcctcgcagactctcccggcgacggctgcggcgtccgggcggaggggagctgggaggtccaagctcgtcgtcgtcgccgccgccgccgccgcggcccgcgggtccgggaacggtttcgagggattaaagacaaatggatttgcaagcatgtcgtcttcgaccaacagtgagaatatgtcaactggaacgggttccctacctcccatgccacccccatcgtcatacatcggttcgcctgttttctggattggagttggtgtagcattgtccgcagcattttctatggtctcttcgatggtaaagaaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaacacttttggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctcctagcagttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcgatgtttcagctactaaagtggaagcaactggaactttggaagaggctgatgtggctgaacagccaaagaagaaatttgcctttgttgacgtttctcctgaagagttgcagcaaaaggaacttcaatcttcactggagacagtggatgtaaaaagtgagagtaaacagagtgaaactatggaggatactgagcaaaaagctccaacaaatggaactgcttttaagatgaatgaaggttctgctagcgggacaactgaatctagcaattcagggcctatgttgtccgttgatacaattgagaaaatgatggaagatccagccgtgcagaagatggtttacccctatttgcctgaggagatgaggaaccctgattcattcaagtggatgctgcagaatccaatgtaccgccaacaactacaggatatgctaaacaacatgggtggatctcctgatcaatgggataaccgaatgctcgatcacttgaagaattttgaccttagcagtccagaagtcaggcagcagtttgcgcaagttggcatgactccagaggaggtagtatcgaaaataatggcaaacccagaagttgctgttgcattccagaacccaaagattcaaacagcgatcatggattgctcacaaaacccgctcaatattgtaaaataccagaacgacaaagaggtcatggatgtttttatgaagatatcacaaatcttccctcaaattaatggctag</cdnaseq>

Protein Sequence

<aaseq>MESLVLASSCSASPRLPPLSAARRRRPSSQTLPATAAASGRRGA GRSKLVVVAAAAAAARGSGNGFEGLKTNGFASMSSSTNSENMSTGTGSLPPMPPPSSY IGSPVFWIGVGVALSAAFSMVSSMVKKYAMQQAFKSMMTQAPPNTFGSNSPFPFAMPP QAAPAAPSSYPYSQPRKDTSPQSATVDVSATKVEATGTLEEADVAEQPKKKFAFVDVS PEELQQKELQSSLETVDVKSESKQSETMEDTEQKAPTNGTAFKMNEGSASGTTESSNS GPMLSVDTIEKMMEDPAVQKMVYPYLPEEMRNPDSFKWMLQNPMYRQQLQDMLNNMGG SPDQWDNRMLDHLKNFDLSSPEVRQQFAQVGMTPEEVVSKIMANPEVAVAFQNPKIQT AIMDCSQNPLNIVKYQNDKEVMDVFMKISQIFPQING</aaseq>

Gene Sequence

<dnaseqindica>5365..5418#5207..5254#5028..5131#4461..4558#3744..3789#3610..3650#3266..3344#3080..3143#2888..3006#2496..2748#1169..1186#1024..1081#829..943#127..319#acgcgcgcacccacccacccaaaaccctagcgcgagtggggaggggcgagggggtggtagttgtagtagcagcagcagtagagctaagctagggttttccctccccccgcgcgcgcagcaggcggcatggagagcctggtcctcgcctcctcctgctccgcttctccccgcctgcctcccctctccgcggcccgccgccgccgcccctcctcgcagactctcccggcgacggctgcggcgtccgggcggaggggagctgggaggtccaagctcgtcgtcgtcgccgccgccgccgccgcggcccgcgggtccgggaacggtgaggggggtggtgtgcttctgtgtgggtgtgcttccgttttaggtttgttcgttagatgcgagccggatgcgctctttgggtaggtgcgcgctgaaagctctcgtatgcgctcgcttcaagtgtccgtgctatagtgtttttttttgtgggattgtcaggaattttattatactctgtgtatcagctggatccatcgctgtgccatgggcttcgttagtggaattgagtgtgttatccttgcgaatttagtgaccttaagtcatgcatccgtgatggaatactgtctttattttcgtagtatggtggcagttggtgagttagtaatggccaccttatccagtattggtagtgtggcaaatgatgagtacaaaatggtcagcatatctgtccttgtttgtagtaatagccgacgaatagacaatcccaatcagcttaggatttcccccattttaatcttatgctgccggaggatctccattattctgattgtttagttgtaacaacaggtttcgagggattaaagacaaatggatttgcaagcatgtcgtcttcgaccaacagtgagaatatgtcaactggaacgggttccctacctcccatgccacccccatcgtcatacatgtgcgccagtttcccttcttttgtctggctacaattttctcaacttacactgcatgatgacatgtaaatcctttgtgcagcggttcgcctgttttctggattggagttggtgtagcattgtccgcagcattttctatggtgtgaatacaattacctgtaatgcttttttgtgattaaatgttcttagagttgtattttaatacttggtgttggctgttatatcaggtctcttcgatggtaaaggtgagttcacaactttcctctgtttctacatcttcaaatggtatgtaccctatcaattgcatacttgatcttgagaatgacccatggtcacctctgcatactagtacataagcaagagaggtattttagtgagctttttttgtgatgaacctacatacccacatgtgagccatgccttcctttctagttcttaatagtttgaagcaatgcatggcatatgttctagcaaaggtggtactgttgcagtgtactccctccgtactcgtaaaggaagatgttaggacaatgtttaagtcaaaccttgggaatataaatcatgaataactctcaagttgttgagtttgaaaatgtaaaaattatatgaatagatttgtcttgaaaaatactttcataaaagtatacatatatcacttttcaataaatatttttatagaaacaagaagtcaaagttgtgttttggagaccgtgtcgctgtccagaacgacttcctttacgagtacagagggagtattgtagttttgttagacaattcattttcttatcacataatttctagttcttttcaatattgataaaatagcataatatccatgcattgtgatggatgtcaaaacaatttggtgtactccctccgattccataattcttgacgttttggacaaggttgaggtcaaatttttataactttgactaccaataactttaaaaatatttagtttaaaggtactagaacagcatatttagatttgtcttataaagtacaataataaaagtaaaaatatatatatttattatatattataatagaaaaacatagtcaaagatatattttgaagaccgtgtcattgtccaaaacatcaagaattatggagccggagggagtactcactaagatcaaatttttttatatataaaagactaaaggaagtcctctaatgtaaattctgcatgtaaaatatgatcatatcacctcacccagcttcaaaatattggcatgtaaaatagtgcaatattttacaaaaaaaacctataagtaacacacatgtatacataaattcacccataaaagatccaaagtgaggatgatacagcatcatcacttccactagttcttttaattactagagagttaacattgttgcaccacttcttttctcgaaagtatatcgtgatgtatccattgttgcactgatttaattaatacaatgttctctttgtaggtttgatctgtataatgtcttgttggaacttaaaatcgtataactctcccttgcttgccagttttgacacattgctaattctgatgcagaaatatgcaatgcaacaagcattcaagtcaatgatgacccaggcaccgccaaacacttttggctcaaactcgcctttcccatttgccatgccaccacaggcagctcctgcagctcctagcagttacccatactcacaaccaaggaaagatacctctcctcaatctgcaactgtcgatgtttcagctactaaagtggaagcaactggaactttggaagaggctgatgtggctgaacagccaaagaagaaatttggtattggccgtttatctctgagaattcttctccaactatcagtgaataggggatggagcttgtgattagtgtctaatcttatgttttcttcatacttttgtcatgcatatctcatgttattgtaacaaaatgtttgcagcctttgttgacgtttctcctgaagagttgcagcaaaaggaacttcaatcttcactggagacagtggatgtaaaaagtgagagtaaacagagtgaaactatggaggatactgagcaaaaagtaagttgcatgaagaagctttgtaataggctccaagtacaattcaactaatcattttcaatgatcttcataggctccaacaaatggaactgcttttaagatgaatgaaggttctgctagcgggacaactgaatctagtaagtactattatcattagcacatttttattattcacatttagtttttttatttgtgtttctgtttaaggatttttagttatctgctgttgataaatgtcctaaactgattatgtatgtaggcaattcagggcctatgttgtccgttgatacaattgagaaaatgatggaagatccagccgtgcagaagatggtttacccgtaagtttgggaccaatataagtcagaattttgtctacatgaatacagggttatacaccttttactgatgttagatatctttgacatctttgaggacagtgccacaacagtataacatgaagttaattctgcatggaataactaattgtttcatttctgaagtcttcagttcttgtaaaacgtggaataataactgtgaattaagagctcacattttgaagtacctaagaattttgaaggttgctaatttcttcaagtgttgcagctatttgcctgaggagatgaggaaccctgattcattcaagtgtatgctcctacttactttttaacactccgatattacataaaatatatgttctgatatagtgaggactgatgtctggaaatcttatgttacagggatgctgcagaatccaatgtaccgccaacaactacaggatatgctgtaatacactcttccttgaatattttccctccaagccagttgttgctaggtcacttttaatttgtcttgaacaatgaagttgtcatgtgctaggattatttgggatgaaacggggtgaaggaaaatgaactggattataatagaggaagaaacagggaatgaccctgaacctaaacggcgcgacgctctccgtcgcactgagaaggcagggccgatgggcactaagataaatattgatctaatgcctaattgatctgggataggatcccctccttatatagatggaggactacttaacctaatcctaacaaaccctgactctatccaatgggcctaggattcccggcccaaagcccatgacattactcacctcttttcgagcagctcatcctcgagctgcagcagaccctgctagactcaaataaaacaccataacctaaactaactcttaagccttttacatctcggcttttagaattgtggtggactggcctgtagaattgtgccttgtatttgatgggttatgccaacttgagttgtgttagtgccactgatcattacctacagtctattatgtcccttgcagacttgcggtattattgcatgatgtaactaatatacaaatcttatctggctttccttagactatgctgatgtttttctctaaacagaaacaacatgggtggatctcctgatcaatgggataaccgaatgctcgatcacttgaagaattttgaccttagcagtccagaagtcaggcagcagtttggtgagtgaattaaacatttccacatttacctagtagttcctgattggaacactggaattctgtttagcttccatgctatgctttagtaccctatcccagtgagcaattcgatgatatgtgctattcccccctaatgcgaacctgttttttatttcttttctgtcttcctttctttctttttgggctatagtgaagtcatatggagcatatgttcttttaccccctttgtcactttctggtgctagatacgcctagcagagtttttcgcacctgctcccattattatgtccttgcatacttggtaggtgggtggagataattaaactggattgtgattccattgtgctgaactagttttctattgtttgcaacaattcatctattgcaaaattgttccatcgcattttgtaaaaagttattcaaattcaaatgagcatatatgacatcaatctattttgtgtttgctcagcgcaagttggcatgactccagaggaggtagtatcgaaaataatggcaaacccagaagttgctgttgcattccagaacccaaagattcaaacagcgatcatggatgtaagtttctgtacaaattcatttcattactgaataaactgttgcatcttctaacaaagaatcatcttgatgcagtgctcacaaaacccgctcaatattgtaaaataccagaacgacaaagaggtatgttttctgtgtattccggtcatctattggacctttatcaatttactcaaagacttgagatggattgcatcatgcttctctttctaatttgatgagtctgcttttaggtcatggatgtttttatgaagatatcacaaatcttccctcaaattaatggctagtggatcgtcgccgtgagattgcagttttgatttttgttgccctatcatctcttccaagtggctgcggtaacatctgttgatcggctgagtaaaaggaaacgaagttcatctgttcagtcattacggacaagatgtaaaagctttcctgtcagggttttttgagttgccaatgtacatcatcatatcgcctagtgtttggtttggtagtgaccctgcctcaagccagagcaggcaacgaagcgaagttaaggattttttttatttacatccccgcgcccccgtacaactgtgtagcttgtgctttgacgttacgaggtttgtggtaggttgtgaagatgcagagatagttcatatcacctcaattttgataatattatgtattatatctgtgttagcattgcaatgcaagcgaacaagtttactatcttccaaagcaacttggttggattggtgcttgtgttactctacatataatttggaggctaataattcaagttcttgaggctactgagctcatgatc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0439900, RefSeq:Os04g0439900