Os04g0441900

From RiceWiki
Revision as of 11:11, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0441900| Description = Cleft lip and palate transmembrane 1 family protein| Version = NM_001059413.1 GI:115458555 GeneID:4335933| Length = ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0441900

Description

Cleft lip and palate transmembrane 1 family protein

Version

NM_001059413.1 GI:115458555 GeneID:4335933

Length

5508 bp

Definition

Oryza sativa Japonica Group Os04g0441900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:22011815..22017322

Sequence Coding Region

22012190..22012389,22012483..22012650,22012734..22012953,22013547..22013737,22013845..22013938
,22014233..22014468,22014589..22014626,22015290..22015387,22015485..22015576
,22015671..22015785,22015866..22016012,22017007..22017174,22017231..22017302

Expression

GEO Profiles:Os04g0441900

Genome Context

<gbrowseImage1> name=NC_008397:22011815..22017322 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:22011815..22017322 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>aaaaaaaaagccttcgcatctagcgccgcctctctccacctccctcgtttcgatctagctcgccggcggcgacgggcgcaggcggcgaggcaggcgggcggcggactggggcagaccatcgccgggatcgtgcggatggccgtgttctggtacttcgccgccaagttcttcggcccgaagcggcccccggcggagccgggcatgctcatgtccaacctcttccagaagggagagccgctggatatgtggatgtatttatcagaaaatgagaaattcaatgacttcagtaatgaggatgcactcgtctggcatgaggcaaacataccatatgcagtctggggacctaccagtacgagaacgcacacattgacatactatccttctgaggctatcaagaacaatggttctttgtatgctcatgtttattttgcccgctcgggttaccctgtggatcctactgatcctgaatatgagcaaagttctgcatttggcaggacacaccctgttgtggcttacttgcgaaaaccaaaagatggtaaaaagaagagcttgctgggagattcaagtgaatctaatgaacaaccaccacctaaggagaataaagattctgtagacaaagatgagggcccagttgaatatatttcttattggaaaccaaatgtaacaataaatcttgttgacgacttcacacggtatccacacaataatgttccacccaatgttgctccatatttgaatgttgatccatcttcaaacaactactacccaactgtattcttcaatgagttttggctactgagagataaattgatagcactcaatgagactgtggaggaactgcctttgaaccttgaagttggtcctattagcatgaccaagtggcaaatatttcttcagatggagcagtccttccaagttcatcgcagttatggaagtatgcttgaaggggaggctgatgagctcaagagagttttccttgaaggaaatccatactttttgggattgaccatgattgtttctctgttccactctctgtttgattttctggctttcaaaaatgatattcagttctggaataagaacaagtccatggaaggtctatcagcaaaatccgtggttctgaactttgtatgccagctgattattttcctctacctgctcgacaatgagacttcatggatgatccttggtagctctggaattggtgtttgcattgaattttggaagattggaaaagcaatgcatgttgagatcgatagaagtggaaagattcccatgttgaggttccgggaccgtgaatcatatgcacagaataagacaaaggagtatgacgcaattgcaatgaagtatcttacatatgtacttctcttccttgtgttctgtttctccatctattcccttaagtatgagaaacacaagagctggtactcatggatactctcttctctcacaagttgtgtgtacatgtttggtttcatcatgatgtgcccacaactattcatcaactacaagctgaagtctgttgctcatatgccatggaggcaaatgacctacaagttcctcaacaccataattgatgaccttttcgcatttgtgatcaaaatgccgatgctgcatcgtctctcagttttcagagatgatgttatcttcttgatatacctctaccagagatgggtgtacccagttgacaagaagcgtgtcaacgagtacggcttcggtggggaagacgagccacaagctccccagacattggaagggagcgatctagcagctgcatcccagcaagccggggctgaggcggaggccgagacgagcacggaggacaagaagacgaagtga</cdnaseq>

Protein Sequence

<aaseq>KKKAFASSAASLHLPRFDLARRRRRAQAARQAGGGLGQTIAGIV RMAVFWYFAAKFFGPKRPPAEPGMLMSNLFQKGEPLDMWMYLSENEKFNDFSNEDALV WHEANIPYAVWGPTSTRTHTLTYYPSEAIKNNGSLYAHVYFARSGYPVDPTDPEYEQS SAFGRTHPVVAYLRKPKDGKKKSLLGDSSESNEQPPPKENKDSVDKDEGPVEYISYWK PNVTINLVDDFTRYPHNNVPPNVAPYLNVDPSSNNYYPTVFFNEFWLLRDKLIALNET VEELPLNLEVGPISMTKWQIFLQMEQSFQVHRSYGSMLEGEADELKRVFLEGNPYFLG LTMIVSLFHSLFDFLAFKNDIQFWNKNKSMEGLSAKSVVLNFVCQLIIFLYLLDNETS WMILGSSGIGVCIEFWKIGKAMHVEIDRSGKIPMLRFRDRESYAQNKTKEYDAIAMKY LTYVLLFLVFCFSIYSLKYEKHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSV AHMPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFRDDVIFLIYLYQRWVYPVDKKR VNEYGFGGEDEPQAPQTLEGSDLAAASQQAGAEAEAETSTEDKKTK</aaseq>

Gene Sequence

<dnaseqindica>4934..5133#4673..4840#4370..4589#3586..3776#3385..3478#2855..3090#2697..2734#1936..2033#1747..1838#1538..1652#1311..1457#149..316#21..92#accaaaaaaaaaaaaggtgaaaaaaaaaagccttcgcatctagcgccgcctctctccacctccctcgtttcgatctagctcgccggcggcgatgtcgcagccggcggcggtggccgctggggcggcggcggggcagcagccgcagggccgggcgcaggcggcgaggcaggcgggcggcggactggggcagaccatcgccgggatcgtgcggatggccgtgttctggtacttcgccgccaagttcttcggcccgaagcggcccccggcggagccgggcatgctcatgtccaacctcttccagaagggagagccgctggtgagaacgcgctcactgcatacgcgagattgattttagtgggggagaagcgtcttaggtttcatgtgcgggtttgtttgtttgtatggcagtgaaggggcggggaattttcggttttagggtttttaggagattttggttgttgtgatctttttttttctttttttttttggggggggggggggtaattgttgctttagtcgggtactgaactttagtcggtttgatgcgagaattttggggtttgggtgcgtgctggatgctttcgaacaactagatcatgcaaaagtatttgtttttttagcattgctggatactgatatgctgggaaaaggaggccatgattttgtttttgttagatgttatgatcgggattaagtttgacatcggaagccagtttcagcctttgagcgtagttttttttctttcaagaattgaagtatacaatataaaaagtgtatatattgagtgtacaatatactggatgctgcacaatttagatctgtatgtagatcacgtgaagatgtttggtgtttaattctcttgctgtctatggtgcttagtgtttaaattctcttgctgtccatggtattagtaggatattgacttttgatttgtttgtcatatagctcggaatgtcacagtattgcattgataaaaaaaacaactgttaagatcagtgaggtagacagtttggacgtgtggtctgaatgaagctggccatgtgatatatccagtacatggccaatcatttggtttagatcaaaattgactttatggtgtttacagtaggcttgtaggaatagctcatcgaagtaactactgtgcatttttttttgtggggaacatattaattcaagataataatcaaatgagtggagacagttggatttttatgttttatgtggcagaacttcttttaaattctttcatagtttcactgtttttcctctgcttaccgttggtttaatgtatggtggctgtattgctgtaggatatgtggatgtatttatcagaaaatgagaaattcaatgacttcagtaatgaggatgcactcgtctggcatgaggcaaacataccatatgcagtctggggacctaccagtacgagaacgcacacattgacatactatccttctgaggtatgatactagctgttgtgatcttgtagacttgcattttattgacctataattttgaaaattggtatgtttctgcctaggctatcaagaacaatggttctttgtatgctcatgtttattttgcccgctcgggttaccctgtggatcctactgatcctgaatatgagcaaagttctgcatttggcaggacacaccgtaagtattgtttttccatcttagaaacctctttttatataatcaatctcttatttaatgaatctcattgcctaaccacgtaatacctgtttagctgttgtggcttacttgcgaaaaccaaaagatggtaaaaagaagagcttgctgggagattcaagtgaatctaatgaacaaccaccacctaaggttctcattcccattctttgttaacatatgatgagcagattttggaattgattttctgcagatgtagcaaataaaacaacaccttgattttctgcaggagaataaagattctgtagacaaagatgagggcccagttgaatatatttcttattggaaaccaaatgtaacaataaatcttgttgacgacttcacacggtacgcaaagatcaaaatggcatgaagttctactgtatcagacctacgacattcctattttttaaatacagttaattggattggttcagtgatatgcactccaatgtttaatgttggtacaaataatttgttagctgaatttagagttaagatattctacgatccaatttgatcgtctctttctgggatgagggagaagggtcaggcaatataattactccctccattccaaaatataaggcacaaccacccttaacccaaaaaccaagaaataattaatatcttattgctatcatgaatcaccccaattaatacaatacatgcaaccaatagaattaaagatcttgtgagtataggatttaaaataataatagtttagggaagagaatgtgctaattagttacatgcatgcatgcacgccctatattatgaaaccactttaaaaagtagttgtgccctatattttggaatggagggagtagtaaatttgaaacaaccaaatcccattggcattttcgtcatgtgtggtgattcatattttacagcataggcatgctttatacatgctatatcttccatttccaattctaggcttcaattatttgttgatgttcatcatttctatgaattatgaatgatatttttccacttcatattttgcaggtatccacacaataatgttccacccaatgttgctccatgtatcctgttaactgttaccattagtaatgtgttatatgttcttctttgttcaaaataattttgagtataatgcatccgtaatcagtcaaaattgtgtttcctttacaatagaaatacagatttgaatgttgatccatcttcaaacaactactacccaactgtattcttcaatgagttttggctactgagagataaattgatagcactcaatgagactgtggaggaactgcctttgaaccttgaagttggtcctattagcatgaccaagtggcaaatatttcttcagatggagcagtccttccaagttcatcgcagttatggaagtatgcttgaaggggaggctgatgagctcaaggtacatgcagatatcctcaattataaatttgtatctatccacatacacacattttgtttatatataccttctatgctctgtgaccacccttacagtacctgctttatcttgctgagattccactagtatactacatatgcacctctatttcatattctttagagccttatagatggttacttttgtgatattattagtatgttgattgaatgatattgttacaagtttccatcttccttggatggttttgattactcattgagctgaccctcgactcctttttgttatttgcagagagttttccttgaaggaaatccatactttttgggattgaccatgattgtttctctgttccactctctgtttgattttctggctttcaaaaatggtacgtacattgcatagttacatattaccatgtatatggtaaccataagtattttatccaaaagtaactccatttacatttgatgatattcttgtgccattgcttagatattcagttctggaataagaacaagtccatggaaggtctatcagcaaaatccgtggttctgaactttgtatgccagctgattattttcctctacctgctcgacaatgagacttcatggatgatccttggtagctctggaattggtgtttgcattgaattttggaagattggaaaagcaatgcatgttgaggtaggccatttaagatatggttctctatcctttatggtcattttgtcacctagttctgttattcttaatatttttcagtcagatataattgtatgaatggaacccatcttatgcataaaagtgaaagtaataaaatgtataaatggaactgatagatctagtgatcttcacctgaaaagttgtatttatagcactgaataaagcactggtatttttaatggataaagcattagtatattgagataacaaagatctcatgattattgtggatttttcactgattactccattttgagtattggatttaactttgttttgtgcatttgccaattctgttcatgaagtccaatgtattggtgattttagtcaactcaaaatcagccctttatttttatggcttttcttgttacgtcaaaccattaatatttggtactaggtatagtctatggcaagatattttttcgtcatacataattgtgtttgtctatatagcgtgattgcatccatcttttgagctcaatgatgtagaaatctttgcatcagttctgatgttttctttgatcaatttgtcacaactcttcactcctgttcagatcgatagaagtggaaagattcccatgttgaggttccgggaccgtgaatcatatgcacagaataagacaaaggagtatgacgcaattgcaatgaagtatcttacatatgtacttctcttccttgtgttctgtttctccatctattcccttaagtatgagaaacacaagagctggtactcatggatactctcttctctcacaagttgtgtgtacatgtttggtaagtaattactttctagttctctctgtgatctactagacaaattagcaatggattttaatgcatgtctttgcactcttcaggtttcatcatgatgtgcccacaactattcatcaactacaagctgaagtctgttgctcatatgccatggaggcaaatgacctacaagttcctcaacaccataattgatgaccttttcgcatttgtgatcaaaatgccgatgctgcatcgtctctcagttttcagagatggtaactaccactgtttactagagtatttggccataccattctcgtgccttcgattataggttcttgaccaactactctgattgccatgtgcagatgttatcttcttgatatacctctaccagagatgggtgtacccagttgacaagaagcgtgtcaacgagtacggcttcggtggggaagacgagccacaagctccccagacattggaagggagcgatctagcagctgcatcccagcaagccggggctgaggcggaggccgagacgagcacggaggacaagaagacgaagtgagcccctcctgctctgcacctccagatcatccaaccacagaacacatctcggctgccaccgggcgtaaattttctgtgccgagcttggaacgctggactcgcctcacccgtcgctgaatgctgctgaccataagagattgtagtaacaggctttgagtgggcgcatcgacgaacacacatacacttgcccaatctatggacgggcaacatcgtcaaacattatcgccactatttcccagtttgtcttaatctttttttaggtaacaacaaccaccaccattaccagatgtcgataacgatgcactagacgcgtattttattggtttatgtataagttttgcattggctgaaaaaaaagtgttcgtttattgatccg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0441900, RefSeq:Os04g0441900