Os04g0442200

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Revision as of 11:11, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0442200| Description = Protein of unknown function DUF482 family protein| Version = NM_001059416.1 GI:115458561 GeneID:4335936| Length = 61...")
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Gene Name

Os04g0442200

Description

Protein of unknown function DUF482 family protein

Version

NM_001059416.1 GI:115458561 GeneID:4335936

Length

6119 bp

Definition

Oryza sativa Japonica Group Os04g0442200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:22040127..22046245

Sequence Coding Region

22040226..22040297,22040891..22041037,22041115..22041285,22041856..22041938,22042025..22042223
,22042644..22042765,22043728..22043794,22043936..22043986,22044162..22044214
,22044767..22044977,22045257..22045427,22045962..22046054

Expression

GEO Profiles:Os04g0442200

Genome Context

<gbrowseImage1> name=NC_008397:22040127..22046245 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:22040127..22046245 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcctcgccggcggtggcgacgcggcacccttccccctccttcttcggcccggaccctcgccgccgccgcgggcattcgccttcgaatctaggcttccgaagatcgggattgcagttaaaggttactgcaatttttgggtggattaagggagacacaagaacacgtgaattgaacccatctgctgaatcatatacgcttacagggtcagcctcagaggcagacaccaagccacgtgaggtttctgttgctgttgtttcttctattatggacattccttcagcagattgggatgcctgtgcagttgattcagttgatcctgacaattttaatccttttctgacccacgcattcctctcaagcttagaggaatcgggttctgcagtgaaggaaacagggtggttacctctgcatgttgttgcacgggatgagaatgaaactgtcgttggtgttgtcccactttacctgaaaagccattcaaggggagagtttgtatttgatcaatcatgggcagaagcttactatagctatggactcgaatactaccccaagttgcagtcttgtgtgccttttactccagtaactggtcaaagaatattagttcgagatacaccatacagggatcaagtttttgaagctttagtgaaagaattgaagagtttgactaccaagctgaaggtgtcatcgttacatataacatttccatctgaaggtgaattcagcaagttgaaggatagtgagttcttgcagagaatcgggatgcagtatcactggagaaatcgagattacagaagttttgacgagtttttaatggatttgaagcaacccaaacggaagaatatcagacaagaacgtaaaaagattcctgctcaaaatttgaaaatgaagcgacttcgtggagatgagataaagagcgagcattgggacaccttttataagttctaccgcaacacaactgataatcactggggcagaccatacttgacaagggaattctttcaccgcttgggagaaaagatgggtgacaaggtgatgcttattgttgctgaacatgacgataaacatgttgccggggctcttaaccttattggaggtgacacattgtttggccgcttatggggctgtctgccagatgcttatttccccaatttgcattttgaagcttgctattatcaggcaattgaagcagctatagaactgaacctgagtaaggtggaggcaggtgctcaaggagagcacaagatccagcgtggttacctcccagtgacaacatacagctgccactacttcttagatcctggttttggggcagctataggaaattatcttgtacatgagacggctcaggttaaacatgttattaaggtcctgcatgattccggcccatacaaggaagatatactgaacgaatttttgcttacacaaggggatggagtgtag</cdnaseq>

Protein Sequence

<aaseq>MASPAVATRHPSPSFFGPDPRRRRGHSPSNLGFRRSGLQLKVTA IFGWIKGDTRTRELNPSAESYTLTGSASEADTKPREVSVAVVSSIMDIPSADWDACAV DSVDPDNFNPFLTHAFLSSLEESGSAVKETGWLPLHVVARDENETVVGVVPLYLKSHS RGEFVFDQSWAEAYYSYGLEYYPKLQSCVPFTPVTGQRILVRDTPYRDQVFEALVKEL KSLTTKLKVSSLHITFPSEGEFSKLKDSEFLQRIGMQYHWRNRDYRSFDEFLMDLKQP KRKNIRQERKKIPAQNLKMKRLRGDEIKSEHWDTFYKFYRNTTDNHWGRPYLTREFFH RLGEKMGDKVMLIVAEHDDKHVAGALNLIGGDTLFGRLWGCLPDAYFPNLHFEACYYQ AIEAAIELNLSKVEAGAQGEHKIQRGYLPVTTYSCHYFLDPGFGAAIGNYLVHETAQV KHVIKVLHDSGPYKEDILNEFLLTQGDGV</aaseq>

Gene Sequence

<dnaseqindica>100..171#765..911#989..1159#1730..1812#1899..2097#2518..2639#3602..3668#3810..3860#4036..4088#4641..4851#5131..5301#5836..5928#ggggcccaggtgtcagtcggttgcgcaacaccacccactgctcgtctccgatcctcacccaagcctctctctctccctctcaccggaggcaaggtggggatggcctcgccggcggtggcgacgcggcacccttccccctccttcttcggcccggaccctcgccgccgccgcgtgagtgcccgctccccctcgcccgatccgattcggcccgtgtcatttcagtgttttttttgttgcgtattcatgcgcttgcgaattgcggtgatagtactccgcgctttcgatggtggagttatgtattttggtggtgggagctttctgtggcaacgatccggttctgttggggattgagcgctgcacctcgttttcagattactgcaacctgtgcgagttatcgaggcattatagatctggacggcgataggaattggtttcagatcgaagtatatgcatggtgtagctttgcgcataacagataccgatgaagtgatacatagtgttttttttttttaatatcaacaggagagaaacgatgaattagtacactacccgcttcaattgtgtttagctttttcgttgaacaagttgtgctctataatgatcatattgtgtaatttttttttctatttagagaagatcatgttgtgtaatatgaccataggagttacacctaccctggcagtaactttcatatagtctatttccttccttgttttattcctgagttgaattcttttctgaaacatggcatccacgttttgcaggggcattcgccttcgaatctaggcttccgaagatcgggattgcagttaaaggttactgcaatttttgggtggattaagggagacacaagaacacgtgaattgaacccatctgctgaatcatatacgcttacagggtcagcctcagaggtgtttctcgggtgaacattgtttcaagtacatatgcacctgattcatgatttttcctaatcattcattggtttcaggcagacaccaagccacgtgaggtttctgttgctgttgtttcttctattatggacattccttcagcagattgggatgcctgtgcagttgattcagttgatcctgacaattttaatccttttctgacccacgcattcctctcaagcttagaggaatcgggttctgcagtgaaggtgagtgcatgaagcatcgcttgttggttccttaataagaacaaatcccagtggatgttttaccattacattatttttcgactacccatttgtatacgcataacaaggacatcgatatacatatgtctatttgttttgagcggttaattctgcttactgaatcatacaggcgttccagttttgcttaccacacactcaagctcaattccaagtattattatattttgcagattgttgttgagtattgacgatatacttttcatgtttaatttacaacagcacgacatgagattgattgttcaacattactgtgttcagtgtgtgcatttttatattacgtgttctctatgatgatatgactgtggagctgttgtattcatttatttacaccgccgtatgattagatttgatgcttaaatacataagctatgtcttcataataatgcacttacagtgcaaaattctgaatatctatatgctctaacctttattttgtaccaacaagcatagtgccacacttattatgttttggtcctccttaaaaaccttgatgtccttgacttatttcaggaaacagggtggttacctctgcatgttgttgcacgggatgagaatgaaactgtcgttggtgttgtcccactttacctgaaaaggtttaacatcatttaacaccatagcatgttttgctgcttgctccatatttcttcatcagctgaacaccaacaacgtgaattcacagccattcaaggggagagtttgtatttgatcaatcatgggcagaagcttactatagctatggactcgaatactaccccaagttgcagtcttgtgtgccttttactccagtaactggtcaaagaatattagttcgagatacaccatacagggatcaagtttttgaagctttagtgaaagaattgaagagtttgactaccaaggtattgaaattagaattcttgcagttactgctttgaattattgttttactaacttttcctgctattgaagaattataataaaatgctattgcttctttgactattttggtcgttgatccttattgacttatggtataacttgtctttttatattcttggtatttacatgaatattcaagaaagcaaagctcctgccattgaattatattaattctgtagtcctcttggaagcaacaagtcaataagaaaataataaaaggaaagatttaaattcatggccctcattacaccttatgtttcttcatggtgtgttctaatggagattttggttttcaacgcacttctatattaattctaaatagggggacaatctttggatgtactgaaccaagtggttttttgttttcttctgcatttcagctgaaggtgtcatcgttacatataacatttccatctgaaggtgaattcagcaagttgaaggatagtgagttcttgcagagaatcgggatgcagtatcactggagaaatcgagattacagaaggtatgctaggtgctagcatggaaattttaggaattctgagtagaaatgtttcagtgtggacttcatgaccatattagatcgaagtcagagtcaaccatttagttatttagtcataaaacagaccggtgagacatacctgaaagcagtagcactaatgtggcaacacacccacagcttgggtacaactacgcaactacagttctcattaaatgtacagatgtactcccactgtcctaaaatgtagcaacttttagcattaaaaatttgttccaaaatattacaacttcccgcctacattctagactgaaccaatcacaacattttctcatttaatttctccacctacttcatcttcttaaccgatcataaccttttcccatttaattccacctacttccttaatatccatgtctaagcctaaaacttcttatattttgggatggagggagtaatacgaaatccaacatctcctagtagtggtgaagagatgatatacttgtcattttttctgtttggaaaaaatgcaatgaacaagctagtgatatactgatactaatcttttgtcactttcatttctttattttttttaaaaaaagaagaaaatgggaaaccccgcaggtttctataatggaaaccagtttgtggtcacatgaaaccagatagaactcacactatggggtttgtctatttctgtttaattttccctttctggtcaagcataccaatagaataattgctgagagcaaataattttagagaaaataacctgtttaagtttaatgttgttgagcttagcaagggttgcgaattttcaagttaaaattgtttgctttctaccctagactttacgagacattactttcagttgttgtttatccaaaagtttataaggttacatactgaactgcctatatagtaaatcaatatttaccaatctctttctgttcattcttttttcccagttttgacgagtttttaatggatttgaagcaacccaaacggaagaatatcagacaagaacgtaaaaaggtttgccttattttggattacttgatatgaatatcaggcatgcatacaaaaaggaaccaaaaagtgtctataagtttgctaataaagatatatatgtctgcaaagtgactaactgactattgtcttctttaccattcccagattcctgctcaaaatttgaaaatgaagcgacttcgtggagatgagataaaggtgctcattttatgaatgaatgattctgtggctgcactatattcgttttctttacttcatcgaatatgctttagttaacatcagcatatcctctttgatttgctatttttctttacattttgagaaggcacttacatattccattcacttatcatgatttttctttgctttgcagagcgagcattgggacaccttttataagttctaccgcaacacaactgataatcagttcagtgcatttccttgtaatttttaaaatgtactaattccctatgtgcaaattggaattataccatataatgtgggcgtcgtattagtctaaaatgactttgctagactaataatgtacttcctccgtttcacaatgtaagattttctagcattgtccacattcatataaatgttaatgaatctaggcatatatatatgtgtctagattcattaacttctaaatgaatatgagcaatgctagaaagtcttacaatctgaaacggagggagtaatttcactaaatccactatatgtgctactcagcagtgaggacacaaattaatcacagtgatgaaataaaatatcgaaactagttagtaaaatgcatgtaattgccattgtgtttccttgtacttggataggaagcgcaaagcttatatttaaggattatcgtcatgttatccctcaccttcacattttatatggcctgatacatatttttatattagtatagaaatatttttcttatgttattcttcccttataggattattttttgtgtgctttcagctggggcagaccatacttgacaagggaattctttcaccgcttgggagaaaagatgggtgacaaggtgatgcttattgttgctgaacatgacgataaacatgttgccggggctcttaaccttattggaggtgacacattgtttggccgcttatggggctgtctgccagatgcttatttccccaatttgcattttgaagcttgctattatcaggtaatttgtgcatctctcagagcttacagaatgtgaacttcataatggaaacttataatatgtattgcagtagcacctgaatatgtttcaaaaccatttcaaatgaagataactaaatcaatatacatttgatgtttctcgatgtacatatgattttgaatttttgtaccagttggaactccaaaatattttgtatatgtatgagtactattttaggagtggtaccatgaacgatgtaacaattatatggcttgcttatagaatatacatactactcaggcaattgaagcagctatagaactgaacctgagtaaggtggaggcaggtgctcaaggagagcacaagatccagcgtggttacctcccagtgacaacatacagctgccactacttcttagatcctggttttggggcagctataggaaattatcttgtacatgagacggctcaggtatttcatttgaatattttcagtaagtttttttatgagctgttaattcttctatgcatctgaagccatcctttatgctcagtcctttgtatgtcggataaggatcttttgcaatttatataatcctaaatgcaatgcatggcatccagttattacccaaccatctgactgcatagtatctacagttattgtagtgtactactgccatccaaaagccaaactcattgcagattagtactacatctggcacccttaaatgtgaaatcttgtcctgttttctgttaaacggttccaatgttatggcctcagattatgatggctgatatgcatctgctctgcagatttgtatgttctgcagtccagttttgcaatgtgtacaccattcatcgcccttaaacccatctgatttttttaccaccatttgaatattcactccgtgttcgcattgtactatgaagaaacaactaatgcatcattgtccttcattagccttaatcgttggagctaaatattctcttttggtgtaaatgtcaggttaaacatgttattaaggtcctgcatgattccggcccatacaaggaagatatactgaacgaatttttgcttacacaaggggatggagtgtagaacatcaaaggaacttacagctatgaatatgttcatgactcaagatgtggaagtagcaaaaatatgggtgatcccatgcctccacaaggagatgatactgtgaatatgtaaacccacagttgtacattactaggcttgtaaatagctgtcatttaaaaatctcaagtcattagcttgaaatgtgacaactg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0442200, RefSeq:Os04g0442200