Os04g0448900

From RiceWiki
Revision as of 11:11, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0448900| Description = Similar to Zeaxanthin epoxidase| Version = NM_001059461.1 GI:115458651 GeneID:4335984| Length = 6853 bp| Definition...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0448900

Description

Similar to Zeaxanthin epoxidase

Version

NM_001059461.1 GI:115458651 GeneID:4335984

Length

6853 bp

Definition

Oryza sativa Japonica Group Os04g0448900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:22768292..22775144

Sequence Coding Region

22768381..22768877,22771752..22771914,22772021..22772095,22772180..22772280,22772366..22772481
,22772571..22772782,22772911..22773002,22773197..22773311,22773532..22773635
,22773759..22773804,22773885..22773949,22774070..22774150,22774234..22774288
,22774501..22774589,22774680..22774767,22774889..22774969

Expression

GEO Profiles:Os04g0448900

Genome Context

<gbrowseImage1> name=NC_008397:22768292..22775144 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:22768292..22775144 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgctcctctccgcgaccgcccccgccaagacgcgcttctcgctcttctcccacgaggaggcgcagcacccgcacccgcacgcgctctcggcgtgctgcggcggcggcgccagcggcaagaggcagcgggcgcgggccagggtggcggcggcaatgcggccggcggacgcggccgcctccgtcgcgcaggcggcgtcgccgggcggcggcggcgagggcacgcggaggccgcgggtgctcgtggccggcggcggcatcggggggctggtgctggcgctggcggcgaggcggaaggggtacgaggtgacggtgttcgagcgcgacatgagcgcggtgcgcggcgaggggcagtaccgcgggccgatacagatccagagcaacgcgctcgcggcgctggaggccatcgacatgtccgtcgccgaggaggtcatgcgcgaaggctgcgtcaccggcgaccgcatcaacggcctcgtcgacggcatctccggctcctggtacatcaagtttgatacatttactcctgcagctgagcgaggtctcccagttacaagggttattagccgaatgacgctgcagcagattcttgctcgtgcggttggtgatgatgctatactgaacgatagccatgttgttgatttcatagatgatggcaacaaggtaactgcaattttggaggatggccggaaatttgaaggtgaccttttggttggtgctgatggaatatggtcaaaggtgaggaaggtgcttttcgggcaatcagaagcaacttattcagaatatacttgctacactggcattgcagactttgtgcctcctgacattgacacagttgggtaccgtgtatttcttggtcacaaacaatatttcgtctcctcagatgtcggtgctggaaaaatgcagtggtatgcatttcataaggaacctgctggtggcactgatcctgaaaatggtaaaaataaaagattgctcgagatatttaatggttggtgcgataacgtcgttgatctgataaatgcaactgatgaggaagcaattcttcgccgggatatatatgaccgaccacctacttttaactggggaaaaggtcgtgtcactttgctaggtgactctgtacatgctatgcagccaaatctgggtcaaggtggctgcatggctattgaggatggttaccagctggctgtagaacttgagaagtcctggcaggagagtgcgaagtctggaactcctatggatatagtttcctccttgaggagatatgagaaggagagaatactacgtgtttctgttatacatgggttggcaagaatggcagcaatcatggctaccacttatagaccatacttgggtgtgggtctgggaccattgtcgtttttaacgaagttgaggataccacatcctggaagagttggtgggagattcttcatcaagtatggaatgcctttgatgttgagctgggttctaggaggaaacagcacgaagttagaaggaagaccgttaagctgtaggctttctgacaaggcaaacgaccagcttcgtcgatggtttgaggatgacgatgcattggaacaagccatgggtggagagtggtacctcctccccacaagttctggagactcgcaacccattcgattaatcagggatgaaaaaaagtcactctccattggaagccggtcagatcccagcaattcgactgcttccctggcattgcccttgccacagatatcagaaaaccatgctactatcacatgcaagaataaggccttttatgtgactgataatggaagtgaacatggtacatggattaccgacaacgaaggtagacgctatcgcgtacctccgaacttccctgtccgtttccatccctcggatgccattgagtttggttcagataaaaaggccgtgttccgtgtgaaggtgctgagcacgctcccatatgaatctgcaagaggagggccgcaaatcctgcaggcagcatga</cdnaseq>

Protein Sequence

<aaseq>MALLSATAPAKTRFSLFSHEEAQHPHPHALSACCGGGASGKRQR ARARVAAAMRPADAAASVAQAASPGGGGEGTRRPRVLVAGGGIGGLVLALAARRKGYE VTVFERDMSAVRGEGQYRGPIQIQSNALAALEAIDMSVAEEVMREGCVTGDRINGLVD GISGSWYIKFDTFTPAAERGLPVTRVISRMTLQQILARAVGDDAILNDSHVVDFIDDG NKVTAILEDGRKFEGDLLVGADGIWSKVRKVLFGQSEATYSEYTCYTGIADFVPPDID TVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGTDPENGKNKRLLEIFNGWCDNV VDLINATDEEAILRRDIYDRPPTFNWGKGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQ LAVELEKSWQESAKSGTPMDIVSSLRRYEKERILRVSVIHGLARMAAIMATTYRPYLG VGLGPLSFLTKLRIPHPGRVGGRFFIKYGMPLMLSWVLGGNSTKLEGRPLSCRLSDKA NDQLRRWFEDDDALEQAMGGEWYLLPTSSGDSQPIRLIRDEKKSLSIGSRSDPSNSTA SLALPLPQISENHATITCKNKAFYVTDNGSEHGTWITDNEGRRYRVPPNFPVRFHPSD AIEFGSDKKAVFRVKVLSTLPYESARGGPQILQAA</aaseq>

Gene Sequence

<dnaseqindica>90..586#3461..3623#3730..3804#3889..3989#4075..4190#4280..4491#4620..4711#4906..5020#5241..5344#5468..5513#5594..5658#5779..5859#5943..5997#6210..6298#6389..6476#6598..6678#cgcgaagagcttcacctgactctcgcttgacgtgctagttagtagtagctctcgatcgaggcgcggtcgtccgtcgagggcgcgtggccatggcgctcctctccgcgaccgcccccgccaagacgcgcttctcgctcttctcccacgaggaggcgcagcacccgcacccgcacgcgctctcggcgtgctgcggcggcggcgccagcggcaagaggcagcgggcgcgggccagggtggcggcggcaatgcggccggcggacgcggccgcctccgtcgcgcaggcggcgtcgccgggcggcggcggcgagggcacgcggaggccgcgggtgctcgtggccggcggcggcatcggggggctggtgctggcgctggcggcgaggcggaaggggtacgaggtgacggtgttcgagcgcgacatgagcgcggtgcgcggcgaggggcagtaccgcgggccgatacagatccagagcaacgcgctcgcggcgctggaggccatcgacatgtccgtcgccgaggaggtcatgcgcgaaggctgcgtcaccggcgaccgcatcaacggcctcgtcgacggcatctccggctcctggtacgccactcccctccccttcccttctcttttcccttttcggatgaaaccatccggttgcatcagactccagtgagcaatgtcttcgtaagttcgtactcgtacagtcgtactgcaccacagtgtaactaaaaacattcatttcagtcacgccatcgtgtgtttaattaacgattctgaccataattaagggcttaataataatcacctcgcggctgcaaccctagcagtcagactatgagtcctgaagggtgtgtttagttctttgggtgtaaaatttttaaagtatacagatacattcgaagtattaaacgtagactaataacaaaacaaattacagattatatctataaactgtgagacgaatttattaagcctaattaatccgtcattagcaaatgtttactgtatcatcacatagtcaaatcatgacgtaattaggctaaaaaattcatctcgcaatttacatgtaaactgtgcaattgattttttccccacatttaatgtcttatacatatgtccaaacatttgatgtgatgttttggccaaaattttttggatctaaacaaggccatgtagttataattttgatccacgttttaataccaaaattttactctgaatcatcctctaactaatattttcactttagataagattatcgttgttgtactttggatcatctaaatcatttctctggctgcatctaccatctaatcttgcaaagaatagcctatatgtatgtcaggaatattatcggtttacatgtaccgatgtagttaaaattatttatacgctcgagagaagtttttgaggtggttcaaactaaaataaagatagctaaagtgaaaaaatcgtttaaaagacactacgttcaaagtgatttttttaatacgggtgaccgtaaacgtattttactcttttgtttactcgagtctccagcatgttacttgtgcagttgctaggcgcgccgctgatctcacgaacacacgtggtgcgacgccgcttaggccaggcgacccacgttggagccgccccaccagccacggcaaattgaaaagaaaaacacctggttagagcaagtttaacagtatagcccactactatctccaaatcatctatagccaatgtaatagctaattcatataatagggcttactatactatcaatagctggtcccatttgtcataaatgtcttggagcctgtgctgcagctctgtagtcaactactcttctctctcttcttttatctctttaaaatatgtttatagctggtttagagcaggtacaatagcaggctataagctaaactataaatatattttaaagagataaaggaggagagagaagagtagcgggctatagatatgtagccagctgcagtacgaactctaagatgtaatgtgggtatgataggtaggaccgggtattaatagtatagtaagcaattatatgaattgactattagattagatatagatgaattgaagctagtagtgggctatactagctctcatcagtcagctggtcggcgtcggcgtcgtcgtcgctgctttccccttctcctggccccgccggcgagcaacccgcgcccgccacgtacgcgcgtcccacttccccccaccccacacgctgctccactacgcgccgaaagggtgaaaccacccatccggcccttccattccgcggcgggtgcctccaattcgtcgagcacgagcgagtgagcgacatggcttctaacacaccaattcgtcgaacacttccgatcgtcttctctgtctccgtgtgagtattgacctcaggcgccgcgacgtctgcaagagtagtcagattcaggagatgctcgttgggtagagcggatcggagagtcactgtcacagtagcgcttctgctcttgcttctcggatcccaccacccaagaagagctttgctttgctcccgttccactgccagtgccagccatggcgccactcccaagctccagctcaacgcgggccacctctctcgtggcgatcccgggcgcctcctgcccccatggccaggcgcaacgcctgctcgccttccgtcccccacgacgcgggtcacagtggcgcgggctttgcgtgtcccgggggcgccacggggcgaccgtcgccatggcaatgccggcggcgcaggcggcggggcgcagggcgcgcgtcctggtggccggcggcggcatcggcggcctggtcttcgcgctcgcggccaagcggaaggggttcgaggtggtggtgctggagagggacatgagcgccgtgcgcggggaagggaagtaccggggcccgatccagctgcagagcaacgcgctcgcggtgctcgaggccgtggacgccggcgccgccgaccaggtcatggacgccggctgcatcaccggcaaccgcgtcaacggcatcgtcgacggcgtctccggctcctggtaaggagtcaagtcgtgccagcgttagaagcgaattgcaacacccaccaaggattggttgcgtctatcaagcctaaaattatggggtttttttttctcctttctagaagtactaagtgtaagaataatttgctggtttacactattggccgtcctgtttgtacaagttttgcttacctattgctacaacctacatgagaatcattaatcacagacctatagtttcaattacagtacaatactgtacaaggaaatgcaatttgttgcttaatcattagtgctaacttgacatataaggcaattattctttgtgcttactctgctacatttgtttgcatttgcaattctgaatgttgttgtctgcttgttggttagctttaagatgggaactcaactgctgaaggcatccatttgactgtgtcaaattggtattcaggtacatcaagtttgatacatttactcctgcagctgagcgaggtctcccagttacaagggttattagccgaatgacgctgcagcagattcttgctcgtgcggttggtgatgatgctatactgaacgatagccatgttgttgatttcatagatgatggcaacaaggtgaatgatcagtttgtcattgtggtcaattggccatatcctcagtataaaatgtgctcaaaatgttatggaaaattcttatgttatggcttttggacaagtacaggtaactgcaattttggaggatggccggaaatttgaaggtgaccttttggttggtgctgatggaatatggtcaaaggtaatgtaatcactcaaatcttttggtaacaattgacaaacataatcaacagagacgtgatttgagaatttaattattggacaggtgaggaaggtgcttttcgggcaatcagaagcaacttattcagaatatacttgctacactggcattgcagactttgtgcctcctgacattgacacagttgggtatgtagtgcggattcagatgactgctgtatttttttcctctgttaggaaatactaatatgttcctcattttcttctgttgaaggtaccgtgtatttcttggtcacaaacaatatttcgtctcctcagatgtcggtgctggaaaaatgcagtggtatgcatttcataaggaacctgctggtggcactgatcctgaaaatggtgagttcctagagtgaaacttttgagctcacaagcatatgcgggccctgtctgtgttcttattgtccactaatgctttttattggcaggtaaaaataaaagattgctcgagatatttaatggttggtgcgataacgtcgttgatctgataaatgcaactgatgaggaagcaattcttcgccgggatatatatgaccgaccacctacttttaactggggaaaaggtcgtgtcactttgctaggtgactctgtacatgctatgcagccaaatctgggtcaaggtggctgcatggctattgaggtacacaattaacttttcatgtctctgatgacactaccagcatggtggatgcatttcttgccctggtattgaaactcagcatatatacttatgttactgtggcaattttttcccacttgatttcacaggatggttaccagctggctgtagaacttgagaagtcctggcaggagagtgcgaagtctggaactcctatggatatagtttcctccttgaggaggtaactgttttttatgttttatcatactagttttacctagatagaatgtcttctggcatcgactagactttatgtcaatacggatcaaaattattcttcaaggccatcttattgtgtatactcttaattctttaggtgtgatcctcagtcatttgattgatgatcaagacattattgtgcttgtgtggctgcagatatgagaaggagagaatactacgtgtttctgttatacatgggttggcaagaatggcagcaatcatggctaccacttatagaccatacttgggtgtgggtctgggaccattgtcggtatgtcaagaacttgttctgctttgtacttctaatatctaaatgtacttatgtggtttatgcccgtcagccagttttaacctgcttattatgtctgttgctgattattttattttatttctgaaacaagtttctgatttagattatcatcataagaaaatcattgaagaatcgcagactaaaattatttggtcttaatatggatatctgtccaatgcagtttttaacgaagttgaggataccacatcctggaagagttggtgggagattcttcatcaagtatggaatgcctttgatgttgagctgggttctaggaggaaacaggtgattattgagctataacttcgattttattttgagctcacatgtagatacataatctgaaaatactcactagattggcatggttgttattactcaccatatgttaatgtcaccaatgaacagcacgaagttagaaggaagaccgttaagctgtaggctttctgacaaggtatatctctattctgtatgatttatcaatgtggggcagtgcaatattttccttttctgacttttacaatcatgctgaaggcaaacgaccagcttcgtcgatggtttgaggatgacgatgcattggaacaagccatgggtggagagtacggtcttacttgtcttcagaattttgatttcattttatgtcaaatatgctctgtataatccttcttaattccagtgcctttgagaaaaggtactcattagaacaatgctacttgcaggtggtacctcctccccacaagttctggagactcgcaacccattcgattaatcagggatgaaaaaaagtcactctccattgggtaggtctaaataataaatctgttattttttggtaacactttcttcaaggattgtagaataaaacaaaattgttcttttgcagaagccggtcagatcccagcaattcgactgcttccctggcattgcccttgccacaggttagataagcaaaatgatggcatcaaatatttgttggaacttctttcgaactataaatgcattgcaacggttcttaggtggagacattcaacagctgaattttgttttacttattactacaacctaattttctcttgcctaaaaaaatcttcagttttatttctgtcaataaaaaactaatgcttctccaatttgttcaacttcattgcagatatcagaaaaccatgctactatcacatgcaagaataaggccttttatgtgactgataatggaagtgaacatggtacatggattaccgagtaagttctgaaaaccgcatgattctttgctcttgccctgaattcgaaatggatgcatcttactaattcagtcccatgtggactctccagcaacgaaggtagacgctatcgcgtacctccgaacttccctgtccgtttccatccctcggatgccattgagtttggttcagataaaaaggtacccaaaccttactgacaccgtattgtaccattgtctcctctcattttgttcagaagaaccatttgcgttgagttgctgcaaaaattctgagttctgatcaatttctacgaacttgcaggccgtgttccgtgtgaaggtgctgagcacgctcccatatgaatctgcaagaggagggccgcaaatcctgcaggcagcatgaacgagagacttcagtcagccatggctgctgtcatcactcatcagctactgtacagcatccagtaaaacacagtgaattttgcactaaaatgcaggttccacttccagacaggattttgaatagctttctctgacggattgaaattgcagttctccatacagaaactgaggtgtac</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0448900, RefSeq:Os04g0448900