Os04g0452400

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Revision as of 11:12, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0452400| Description = Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15) (Ubiquitin- specific processing protease 4) (AtUBP4)|...")
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Gene Name

Os04g0452400

Description

Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15) (Ubiquitin- specific processing protease 4) (AtUBP4)

Version

NM_001059486.1 GI:115458701 GeneID:4336009

Length

6006 bp

Definition

Oryza sativa Japonica Group Os04g0452400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:22966095..22972100

Sequence Coding Region

22966366..22966762,22967061..22967242,22967332..22967517,22967839..22967937,22970078..22970194
,22971619..22971741

Expression

GEO Profiles:Os04g0452400

Genome Context

<gbrowseImage1> name=NC_008397:22966095..22972100 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:22966095..22972100 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtcatgggagccagcggctccaagctcgagaaggccctcggcgaccagttcccggaaggcgagcgctacttcggcctcgagaacttcggcaacacctgctactgcaacagtgtcctccaggcactatatttctgcatcccgttcagggagaaattgctggaatattatgcaaataacaaaactcctggagatgcggaggagaaccttttgacttgtttggcggatcttttcatgcaggtaagccagtcaaagaaaaagactggcgttattgctccaaaacgctttgtccaaagagtaaagaaacagaatgaactatttcgcagctacatgcaccaggatgcacatgagttcttaaattttctgttgaatgagcttgttgatattctggaaaaggagtctaatgctgcgaaggactcccctcaatcatcatctcctgaaaaggttccaaacgggccagttcaacctttagccaatggtgttagaaaagaaccaccggttaccttggtgcataagaattttcagggcatactgaccaatgagaccagatgcttaagatgcgagacagtaacagcaagggatgaaacattttttgatctgagtgttgatattgagcagaatagttctatcacaagctgcttgaaaaacttctgctccacggagactttaaatgctgaggacaaattcttctgtgacaaatgctgcagcttgcaagaagcacagaagagaatgaagatcaagaaggctccacacatattagttatccacctaaagcgcttcaagtacatagagcagcttggtcggtataagaagctttcataccgggttgtattcccaatggagctgaagctcagtacatctgatgatgtagataccgagtactccctctttgctgtcgttgtccatgttggaagtggccccaaccatggacattatgtaagccttgtcaaaagccacaaccactggttgttcttcgatgatgaaaatgtcgagatggttgaggagtcgaccctgcaaacattcttcggttcttcacatgaatactcaggcaacacggaccatggatacatcttgttttatgagggtcttggtgggaagagttag</cdnaseq>

Protein Sequence

<aaseq>MVMGASGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALY FCIPFREKLLEYYANNKTPGDAEENLLTCLADLFMQVSQSKKKTGVIAPKRFVQRVKK QNELFRSYMHQDAHEFLNFLLNELVDILEKESNAAKDSPQSSSPEKVPNGPVQPLANG VRKEPPVTLVHKNFQGILTNETRCLRCETVTARDETFFDLSVDIEQNSSITSCLKNFC STETLNAEDKFFCDKCCSLQEAQKRMKIKKAPHILVIHLKRFKYIEQLGRYKKLSYRV VFPMELKLSTSDDVDTEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMVE ESTLQTFFGSSHEYSGNTDHGYILFYEGLGGKS</aaseq>

Gene Sequence

<dnaseqindica>5339..5735#4859..5040#4584..4769#4164..4262#1907..2023#360..482#agggtagtagactagtagtaggcgaaagaaaaaaaaaatccccccaaacgagagaagcggcagcgacgacgacgacgacggcgacagcagcagcggcggcagaagcagcagaagcaaccccctcctccgccgctccgccccatcggatcgaggccgccctagggtttcccccaggctccgcccctccgcttcccccctctccgccgcgcgcgcgcggggagccaccaaaccctaggacggcaaacccggcgcgatcgcccacggtggaggcctcgtcggcggccgagaggagccgctccgggctcgggtcggggttccggtacctcaccggcgccgcctccgggtggtgggaccggtggatggtcatgggagccagcggctccaagctcgagaaggccctcggcgaccagttcccggaaggcgagcgctacttcggcctcgagaacttcggcaacacctgctactgcaacagtgtcctccaggtctctatccccctagccctcacgcctccgtagcttgtggattttctgtgactgaacgcgcggtatgctcggtgtgattctggggattgtgatgagcgttctatgttgtagtatcgtagtataagtagcttgattcagtgccttacatgctttgagttttgattgggtggtttgttcgataacctttgtgctgcctttgattgttccagttgacttgtgtaggttcctaatcatgtatttatgttactgtaatagatgattagtacattagagtttgtgtgcttttttttttgcgaaatgtgttgttatgggtagaatatgtcaattctgcagtaatacaagctgttgtgagttgtgcggcatgtatattagcactatgcttgcatggttaaatggttagcttcatcttatatagagatgtaaagaatgctgggttccagtcgttctgtatgttgaccgtcctgccaatagcttcatatttttggaatgcaagtattagtttctctctattagcacccatgtatgtaagtagctctagaattgaatgtggtagacatatatgggtgtggtggcccgaaatttagaatcaatgtgttcatctgaatagtattcaaagttatctggttccagttatctgaacagactttgttatgcaagaattaagttagaacttataagtctagcaatatacaacgtgctttcatttatctggttccagtttgaatcgtctgctcatctgtatgtggcattgccgtgacaacttttatgcctttaatctgaagctcttagtatatgagtacaattcaataagatctgtatgtgagaagaaagctttgaatatttcaattaagtaactggtaatggcaccagtgggttgaaaacattgtagggtgtatttgacaaatgcaggatcactttctgcccattttcttttagaatggaagtttgaggcatttcctagcagttaaagctataggacatttctgacaatacttttacccacttctgaatattcgttttatttgattgaggatcttgttaggacacataattttgtctgttctgttgtggatcgttatccttattgtgcgagaaacccacaggagacaattttagtgttcactatcttagtaccttcgctatagttgtagatctaccttatatttgtaaagttctgtgcataatattgtagttgtcatgaaatatgatgaacaagtttatattttattatatcttggtatgcaatagtcaaataatgttatcattcctgaaccatattaaattatggactatttctgtttggtaaatgttctgctgtaatctcttcttcacagtttgcaatcttacaacttgcactgcacagtcaattattttttatacaccttattatttacatgaaccttacaatgatacttgtgttccaggcactatatttctgcatcccgttcagggagaaattgctggaatattatgcaaataacaaaactcctggagatgcggaggagaaccttttgacttgtttggcggatcttttcatgcaggtaaagtggacaaagtataagtttcttacttgatgataatgatatgtaactgtgtttgagcatattgttgctttcaaaaactttgaatgggtaacagcttcttcataactgttcttcattgcattcagtggaactttcatctaccaagtattatatttctgattgttaaggacaatagtacgctgatgttttagttgaagtaggattgtaaccatgatgctagttggtaggccctatttgcttggggacttactccctccgtcccaaaaaaaaggcaaaccgtgggtttccgtgccaacgtttgactgtccgtcttatatgaattttttttataattagtattttcattattgttagatcataaaacatgattaatactttatgcgtgacttatctttttaatttttttcataattttttcaaataagacggacggtcaaacgttgggcacggaaaccagggtttgtctttttttgggacggagggagtattagcctgcttataatctaaatacctaaacctaagcaaacagaaagtttttttattcggctttttttaaaagccataagccactgttgcaccaacaagccaaatgctagatttgagtagcccttttggcttttgtgggttggtgttatccctccacccttatacttgtggattaaaagctatggccttgcagactacaaatttcaaatagctagattaagagcttatgctgaaaaaagtggtgggtcttaggctcattcctgggagaagaatatcagaatatggtaagtcctattctatattatgtaaaggccttaagttttagtaatgccttacagggtggcatcaagtgacttgtatctgctgtgcagcctttaaaatatctgttccctctcttcaggatgacacgatgctgtaactgtagtagacagaagcatgcaaagtatttttattttcattctaacagttctcaagaacaaatgtttttgttacgacaatttaagaacttatattgtcctattgattatgcttctgcaataaggggttatctgtaatggcatgttttagttgtagtggatgtcgtggtgttgtcatgccgatgacagggtgtcaagtcagttgaaagcaatcagtactcaatattattcccagaccattcaccctgagtccttgatttgaggtgagaagaccctttaaaggatagataatcacaaagaaataaacagttctagcagaggtctaggagatagggatctctgatctggcttctgtggtttctctctgtgctgctgcttaatctctgaggagaacctggtggacgtggaagaagttgtggaggcattagggggtagcagtatggcagaggaaagaaggataggtcataggtcaggaaagtagtgaagactgctacctggtgttggtgtgagtggaagcctggcaatatcaggacatgagattacgtaggtagtgaggtagctggccgtctcacatattatccccctcctgctatttgtgtgctccatgtgttgattagggtgccagcttttgtttagcaccctcatccattgaagtcatcatataatcgctgccagggtgaagtttcgtatgttgccagttaataaatctctattgcactgagtttgaaggttttacgtcatcgtgtgttgatcagagaattatgatggaagccacttgatagcactgtgcagctccatatgagatatatttgttgtctgtgtgctattttcttgtttgggtatcttgaggtgatttttctagtcttcagagagtgcactgtttattggaagccacttgatagcactatgcagatatatttgttgtctgtgtgctatttatttgtttgggttttcttggggtgatttttctagtcttcagagagtgcactgtttattggaagacttatatcaacttacttagagtaatgtacactgacctgctgttacaatcagcatatattctaaaatccatcacacaagttgattaccaaataagatatttggcttgatgtcgtacccacaaattcattgatctgtgtgcattatgtttactgctcggttttgtatggtctctgaaatttctgtcaggatattgtctctgtcagcaacttaatggatcataatatatattgcaggtaagccagtcaaagaaaaagactggcgttattgctccaaaacgctttgtccaaagagtaaagaaacagaatgaactatttcgcagctacatgcaccaggtaccttgcatgtattattatagtagtacaatttgttgatttgtgaagcattgtgatgacattgtcacgttcacacaatataagagcacattttcatctgctataatttgaagcttcatgctgaccaaattgatgcaatttaatacaaactccataatcgttttttactttcaaatgttccatttattaattggtctgagtgatgtcattttcattattggtatagttggcatttaaagctgacaattgattttgttggagaaaagataattgtgtttgtattcactaataataatttacccttccatgattactgtgtaggatgcacatgagttcttaaattttctgttgaatgagcttgttgatattctggaaaaggagtctaatgctgcgaaggactcccctcaatcatcatctcctgaaaaggttccaaacgggccagttcaacctttagccaatggtgttagaaaagaaccaccggttaccttggtgcataagaattttcaggtgactgaactctctgaaaataccttgcagctttccacccttaaagagctcgggtcattgtcatcttatttttctcgtaacatgtgtagggcatactgaccaatgagaccagatgcttaagatgcgagacagtaacagcaagggatgaaacattttttgatctgagtgttgatattgagcagaatagttctatcacaagctgcttgaaaaacttctgctccacggagactttaaatgctgaggacaaattcttctgtgacaaatgctgcaggtacaactatgtattatatttattttacactgcattttcttttcttcacaatgcagcaagaattctttgaactattgatttgttttcataatgtgccatttccatctttgcttggtgagcactgtttggtatatgtgcacaacagcgcaaagccctgactggtcacctttcctttgaagaacctgttatatgctgtagactttgggtgaaacagatgaaaattgtgtgctttaactaccatatgggaaggcttgtaatcttaactatgctgagctccaatattttgatcttgttacagcttgcaagaagcacagaagagaatgaagatcaagaaggctccacacatattagttatccacctaaagcgcttcaagtacatagagcagcttggtcggtataagaagctttcataccgggttgtattcccaatggagctgaagctcagtacatctgatgatgtagataccgagtactccctctttgctgtcgttgtccatgttggaagtggccccaaccatggacattatgtaagccttgtcaaaagccacaaccactggttgttcttcgatgatgaaaatgtcgagatggttgaggagtcgaccctgcaaacattcttcggttcttcacatgaatactcaggcaacacggaccatggatacatcttgttttatgagggtcttggtgggaagagttagattgattttcttcaccttccctgttcttttcttttttttttctttggagcatgcaagaataccgttgtatttacacagctatttcattacctccatggaaaattgttgatctcagagattgtgagtatgaacatgaggacgctggattttgggtggttttagtgtacagagcataatggaaccttgctcctagtggtgaaataaggtgtaaatcattaagtacgcctgacttttttttttcgtcagcattgacatctttaccaaagaatgc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0452400, RefSeq:Os04g0452400