Os10g0105400

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Revision as of 08:29, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0105400| Description = Conserved hypothetical protein| Version = NM_001070559.1 GI:115480861 GeneID:4347955| Length = 9282 bp| Definition ...")
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Gene Name

Os10g0105400

Description

Conserved hypothetical protein

Version

NM_001070559.1 GI:115480861 GeneID:4347955

Length

9282 bp

Definition

Oryza sativa Japonica Group Os10g0105400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:385775..395056

Sequence Coding Region

386008..388056,388166..388294,388931..389062,389167..389538,389753..389894
,392274..392533,392737..393015,394796..394939

Expression

GEO Profiles:Os10g0105400

Genome Context

<gbrowseImage1> name=NC_008403:385775..395056 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:385775..395056 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccgccgcccatgctcgcggatgcggcggcggcggcgccctgctcctcctcatcatgctcatccaactccagctcttcctcctcctcctccgcgatctggtcgcgccgccgcgacgagatcaccttcgaccgcctcgacaagttctggagtgccttgtcgcctcaagcacggcatgagctcctcaggatcgataagcagactctcattgagcatgcacgcaggaatttgtactgttcaaggtgcaatgggctgcttttagaaagtttcacacaaatggtcatgcatgggaagttactgcaacaaaaaggtccaggtgttgtacaagatgattcttggggaggcctttcgacaacaaaggatggcctcctgactcttcttgactgcttcataaatacaaattcccttcatgtactccagaatatatttgacaatgcacgggcgagggagcgtgaacgggaaatgctttatcctgatgcatgtggtggaggagaaagagggtggattagcccagtaatagctaattatggcagggggcatggaacacgagacacatgtgctttgcacactgcacgcctttcttgtgatgctctggtgggttactggtttgacctgtgtgaagaaactagatcatctcttctgcggatgagggaagaagatttcattgaaagacttatgcataggttcgacagcaaaagattttgcagagattgccgaaggaatgtcattcgtgaatttaaggaactgaaagaattaaagcgtctgcgacgggaacatcactgcactagctggttctgcattactgatacagctttccggtgtgaggtgtttgaggatgctgtcttagttgattgccgccaatctttcttggatcaagataagtcctataatcgttttgagtttgctgttggaacagaaaaagggaaatctgatatactaggatttgaagctgtggggatgaatgggcaagtgcacaggaagggccttgatcttgaccagtttgaagattattttgttactctgagagcgcattatgcggataacaagaacacagatttctatgtgaaggcccatgccttgaagggccaatcatgtgttcaccgcaggctgatcgtgggggatgggtttgtgacaattactaagggagaaagcattcaaagtttctttgagcatgctgaagaagctgaggaagaggatgaagatgatgctatggacagggatggaaatgatactgatgtcgatggtgttcatccacagaagcatgctaagagtcctgaacttgccagagagtttcttttggatgctgctgcagtgatattcaaagaacaggttgaaaaatctttgagggaagccacggcacaacaaaatgcacatagcgtatttgtgtcccttgcattaaaattgttggaagagcgggttcatgttgcctgcaaagaaataattacattggaaaaacagaccaagcttcttgaggaagaagagaaagaaaagcgtgaagaagaagagcgcagggagaggaggagaacaaaggagagagaaaagaagcttagaagaaaagaacgtttgaaagaaaaggaaaaggagaaagaaaagataccagttcaattgaaaccttacattggtacctcgtcatcacccctgagcaactcagcaacaccaattaatgatcagtcaccagatattgcccactccaaatactcagctagcgatgatgaagataaagatagtattgtggtcacggaatcgttctctcctgatacctgtgttgatcaatctctaacaagggaaagtgatggacaaagcaatgagtttcattgcagtacaacactggaatttattccatcagattgcaatggttctttcatgtgtgaacaatctacatcctcaaggaggaaactcagatttagaagggattcccttcaagaacagaccactggtttttggtatgaagattgccaagatgacactgggggtgttggaaatattcactggcaatctagggagagggcaaggaatgcaggtagaggctgcaactctttgttcagtgcgaataaccggacaagagaaaggtatgagtacaatgcctgcagttgtggccagcaggaagattatgggtatttttctccaacagctagatcaagtagagagatgaagatgtccaggaaaacaatggttgagaagccctggttacagtaccgcaggtgctatccattggatagcttcatagtgtcaaaaggaagccgagttggtagtacgccaaacaagaatgcagctccaaaacaagtatgggagccaatggatgctagaaagaaagctagcttagggagttcgaatggttcttctgaaacagttagcggtgttgatcgatccaatcaagtggggtgttcaaaggatattgtcaattgtagccaaatacttggctcggagcatgaagaactagctgaagcttgcaaatcgataacagatcagccatgtgaaagcagtgaaaataatcaagctgcttgcaatagtgaacctcctgtggtgaacaagccagacagctgctttaccaaagatggtggtcagacagcaaacatgaccagttcagatagctcttcatgtctaagcgagggagacagagatagtagcatgagcagcatgacctcattgagtgctcagaatccggaatcctcgtctacttctgattcagaaggatcttcagaaaggaacaatagcaacccaggcaatccaccaaccaagaacggttcgcgttcattacttgaaatgtgcgcaggaaatggtttcagagaataccagccacagaatattcacccttctgatggcaatcaatttgggtttggtgtgacccctttccaggagcagctgttacatcagcaaaagattcatgcagctccatacccgtcaaccttgatgggtttccataatcatcacatgtcagttccaacaaatggatacctagcataccctcaacctggtcatttctacccaaatgctgttggatatggtgtggctggaaaccaatgtgttgacttcccaatgcagtacagtaatgtgcatccttatgcaggtcctgaatttggttatgtgcctgcacagccagtccataagactccggtgaactttaatgccatggtgccaactgctgcgctctttagaaatggagcgccagaagtcataaaccctgtcattgtaaaaccagacaggcagcatcgccatacccttcctcctgagccgaagcgggtggatcctgatcctcagaacggctgttcagaagataacaagaagccgcaagatggctctgtgcctttctcgttgttccatttcaaccttcccatatcctcgcctgcccaggcatcatctgaagacgaggtgagtggaggatgtttggcgtcgagatcgccaactccaagtgctcaaaaagctcagccttgctcaagggaggagaccaacataaaggagtacaacctgttctctgcaaggactggagtggaatttcccttcttctag</cdnaseq>

Protein Sequence

<aaseq>MPPPMLADAAAAAPCSSSSCSSNSSSSSSSSAIWSRRRDEITFD RLDKFWSALSPQARHELLRIDKQTLIEHARRNLYCSRCNGLLLESFTQMVMHGKLLQQ KGPGVVQDDSWGGLSTTKDGLLTLLDCFINTNSLHVLQNIFDNARAREREREMLYPDA CGGGERGWISPVIANYGRGHGTRDTCALHTARLSCDALVGYWFDLCEETRSSLLRMRE EDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRLRREHHCTSWFCITDTAFRCEV FEDAVLVDCRQSFLDQDKSYNRFEFAVGTEKGKSDILGFEAVGMNGQVHRKGLDLDQF EDYFVTLRAHYADNKNTDFYVKAHALKGQSCVHRRLIVGDGFVTITKGESIQSFFEHA EEAEEEDEDDAMDRDGNDTDVDGVHPQKHAKSPELAREFLLDAAAVIFKEQVEKSLRE ATAQQNAHSVFVSLALKLLEERVHVACKEIITLEKQTKLLEEEEKEKREEEERRERRR TKEREKKLRRKERLKEKEKEKEKIPVQLKPYIGTSSSPLSNSATPINDQSPDIAHSKY SASDDEDKDSIVVTESFSPDTCVDQSLTRESDGQSNEFHCSTTLEFIPSDCNGSFMCE QSTSSRRKLRFRRDSLQEQTTGFWYEDCQDDTGGVGNIHWQSRERARNAGRGCNSLFS ANNRTRERYEYNACSCGQQEDYGYFSPTARSSREMKMSRKTMVEKPWLQYRRCYPLDS FIVSKGSRVGSTPNKNAAPKQVWEPMDARKKASLGSSNGSSETVSGVDRSNQVGCSKD IVNCSQILGSEHEELAEACKSITDQPCESSENNQAACNSEPPVVNKPDSCFTKDGGQT ANMTSSDSSSCLSEGDRDSSMSSMTSLSAQNPESSSTSDSEGSSERNNSNPGNPPTKN GSRSLLEMCAGNGFREYQPQNIHPSDGNQFGFGVTPFQEQLLHQQKIHAAPYPSTLMG FHNHHMSVPTNGYLAYPQPGHFYPNAVGYGVAGNQCVDFPMQYSNVHPYAGPEFGYVP AQPVHKTPVNFNAMVPTAALFRNGAPEVINPVIVKPDRQHRHTLPPEPKRVDPDPQNG CSEDNKKPQDGSVPFSLFHFNLPISSPAQASSEDEVSGGCLASRSPTPSAQKAQPCSR EETNIKEYNLFSARTGVEFPFF</aaseq>

Gene Sequence

<dnaseqindica>7001..9049#6763..6891#5995..6126#5519..5890#5163..5304#2524..2783#2042..2320#118..261#acccttgttcattcctcctcgcctcgcctcgcatctcggctcgccgcgccgtcagatccctcgcctccgatggcgcaccgccgcctctgaccaaccaccgcccccaccgccgcccacatgccgccgcccatgctcgcggatgcggcggcggcggcgccctgctcctcctcatcatgctcatccaactccagctcttcctcctcctcctccgcgatctggtcgcgccgccgcgacgagatcaccttcgaccgcctcgacaaggtatctccccacgccccacgcccccaaggactcagctcgcctcgatcggatctgggggcttcgccgtctagctcacgcggatctgtctgactttttcactgtgcctctcgcgttgcctagctccacgcccgcatgtccgtaccaagcttggggtattggatttgattggtcgtcgatatgggatgatgcttacacggccacgcttcccggttgctgtatatcattcattagattgtggacttgctcgcagtcggcgtgagctccccatgggggctattaagtgcattcgccaggcgaaacggctgtatttcactgcctgccttaacgcggatatgcgaattatccgattgctttgtcctctttcaacgattggccgcacttactgccggtgcttctcagctagctgactgggccagttagagcaacctgaaactgtgatagggtaattattggccctttactaagggccagtcatggactgttaccagtggtggcctagccgttacgcttctcttccgtccatctcaccatcgactgtaccttactactgaaacctttgatttggggtttgggttacgatcgtaggtatgtgctccggatttccattttccttggttactctctgcactgctgaggcgccactgaaatgattcgattataacctactatgacttgaccttagtattttactaaccaaaagtcatgtagtgattcatgctatgtgctattctcttatatggagttctacccatacggcttgattcttatagtctgcatttggcaattcataatttattgcctagacctttaaatgtgatgcttatttttcctagaattatgagttacctattcaagagaaaatcattacttcgtataccttacaaagcggtcctccctgatatctcagtacatgcttatacttggtaatgtaaggagtaggtgctgtttagtccctttcacctcaaattagtatctgtgcttcttgctcttcgctcaaatattctctacccaggaatccaaaacatttgggtatcaacatatactccaatacatttttctttgttgcgtgaaaaatactaagtctctaactgctttggttggatctgatgaattagatcatttcaatcttttattggagtaacagttgctgtattgtgctatacaatgatagaccttggttctctctgtttagaatgatcatttttttttcctatcattctttcgaattggccttgttgtagattgagttgctataatgttaatggcaccaagagtagagaatgcatagcaccttctttgtttgtaatatattatcatctttatatttgtttattttggtttgggaacttaaggccatcatgactcctgacttaaatggcgtaaatgaacttgccttacacctcacattctatcattctatggaagaatgaggagtctctacccacaattccgaacttgtttctttatgctatagatgctgaacaatatgtaatttgcagacccaccaaacagtttgtcttttttgtagaaatgtcacactttgatggtctatgctggataatgttatacatgtattaagctgatagttgatgtttatattattcattgcactatatttttcctagtttatttgaaaatgtttactatcatctctcctgcaagaacaggttacttgtttaagctttcttgatttgttattggagtaatggaagatctaaaaaatcatattttactaacagaaccgatcatttttattgatgtgagttccattttttcccagttctggagtgccttgtcgcctcaagcacggcatgagctcctcaggatcgataagcagactctcattgagcatgcacgcaggaatttgtactgttcaaggtgcaatgggctgcttttagaaagtttcacacaaatggtcatgcatgggaagttactgcaacaaaaaggtccaggtgttgtacaagatgattcttggggaggcctttcgacaacaaaggatggcctcctgactcttcttgactgcttcataaatacaaattcccttcatgtactccagaatgtaagcctgaataacaccttatggttttatacttttctatttttctacttgttcttgttgggttagcaatttattgagaacactactgaagttttctctagaccatgcctgttcatttaaaagaatatttgcatgatgctgggttagggtgcactaatttaaccattctaattttctccgaattaatttgactcttttaatagatatttgacaatgcacgggcgagggagcgtgaacgggaaatgctttatcctgatgcatgtggtggaggagaaagagggtggattagcccagtaatagctaattatggcagggggcatggaacacgagacacatgtgctttgcacactgcacgcctttcttgtgatgctctggtgggttactggtttgacctgtgtgaagaaactagatcatctcttctgcggatgagggaagaagatttcattgaaagacttatgcataggtgagtgcaaccaagtacagtttgtttgatacaagattaaagatcatgaaattgatgcacagttaagcatgtgaacaaatctatctagctggagtaagagtataatagcccaaaaactttatttgctttccccagtaaggaatcaactactgtcaacacaagtatgctatcatcaattgggatgattttgtgtactaatgcctccatccataattgtgtgggtgcatggcgcatttttccaatggcgttgttcacaaatgcaggccatatctaacattccagcctccttgcatgcttccattgaatgttgtgcttagagctaatatattatggtaatttagtcctatccaaaacctcctttgtacatgtccaagacaaaatttccccctacatttgtgattgaagggaggttttttgttacatcgctttatctatttgctccttgatctgatgagggcgtcttttgagtttttaatgtttgggggagtactattagtcgtttttttattagttctcgttacttataaagcaataatgcatcattgcactaggaaaacgaaagctttatttacaaatggttagatttgtatggttcatgtaagtgctatggtaccttggtgtgcaattttgtgtactttggtagaagtcgatgtttctctgtgattcaaaaaggatatttgttttttttcctattcaaatagttactgcttaccagcagtttctaaatcggattatgaggataactacatactcgctccgttttttaatagatgacgccgttgactttttctcacatgtttgaccattcgtcttattcaaaaaatttacgtaattataatttattttgttatgagttgttatatcactcataatactttaagtgtgatttatatcttatacatttgcataaaatttttgaataagacgaatggtcaaacatgtgagaaaaagttaacggcgtcatctattaaaaaacggaggtagtagtatagttgcaataatatgttttttatatccggactttgtgggaaacttttggtctgctatgttccgagtgactgcatttcacttagggtatgcttggttcatggccaaggttggataggatatggccatccatattttcagggatatggtgatccaactttttgttttgttgcgtggatatggccatccagtttcttgtatgattagatggatgaggatggatggattgataacaataaactattaattaataagaaagtatattaattatcattaatcttagcatattctatactaattaacaacaaaatagattaattgtatatactctctcccttccaaaatataaggcacaaccatccttaacccaaagatcaagaaacaattattatcacctcctagtttggatcaccctaataaatataatacacccaatagaattagagatctcgaaggtggaggatttaaaaaataataatttagtggagaggagttactaattgcatgcatgcatgcatgcacgccttatattatgaaacatctaaaaaagtagttgtgtcttatattatggaatggagggagtaaagcactaaacctcaagaccaagaataatttaaatcgcatcaatcaagataccatgcacacattctcccacaatgcatgcatcgattaaaacaccatgccaattacaccctagcattcacacattctcccatgctgcattaattctatttcgatgaaatccatgtccatgcagttatatgatgatcaatttgagagattttgaatttcattatatgatgatcaatgtgggaatgagggagtaattaacaacaaaagttattaattattgctaataaattactactacctccgtcccagaaagactgcagttttgcattgtttatgtccaacgtttaaccgtccgtcttatttgaaaaacttttacgattactatttttattgttattagatgataaaacatgaataatactttatgtgtgactatttttttttattttttcataaacttatcaaataagacggacagtcaaacgttggacacagaaacccacaactgcacttaaaatgggacggaggtagtaatgaattgagattagcaaaggtgggccaaatgagctcatccagcatcttcgtggaatattccctctcctgaccaccccatccacccttgcccaccaaggcaccaaccaaacacactcaaaagttggatcgccaactcctatctaaggatatccctccaaccacccttagtatatgtgggatagttacgacttgtgattggaagaatgcttaatagacttttatgctcttcacaggctggtttggtgtgtaatatttagctaattctgtggatgaatatctggacaggttcgacagcaaaagattttgcagagattgccgaaggaatgtcattcgtgaatttaaggaactgaaagaattaaagcgtctgcgacgggaacatcactgcactagctggttctgcattactgatacagctttccggtgtgaggtaaggatggtgctcctttctatatgcactctcacaattgttctttctttgtttctgctttctcttcttcgaatacactcagctagcaaaaccttataagggtaaaactatggaaaataagactaaaaggagttgcattcccatttttaattgcacagtagatgacatggagtttgcctgtaggtggttaacatctggcattttatattttcaggtgtttgaggatgctgtcttagttgattgccgccaatctttcttggatcaagataagtcctataatcgttttgagtttgctgttggaacagaaaaagggaaatctgatatactaggatttgaagctgtggggatgaatgggcaagtgcacaggaagggccttgatcttgaccagtttgaagattattttgttactctgagagcgcattatgcggataacaagaacacagatttctatgtgaaggcccatgccttgaagggccaatcatgtgttcaccgcaggctgatcgtgggggatgggtttgtgacaattactaagggagaaagcattcaaagtttctttgagcatgctgaagaagctgaggaagaggatgtaagctcatttcttaagtaataagattaggatgatcagaacatttgttagtccatgttgatggtctgccaattcatatagtctaatttgttatacatgagcaggaagatgatgctatggacagggatggaaatgatactgatgtcgatggtgttcatccacagaagcatgctaagagtcctgaacttgccagagagtttcttttggatgctgctgcagtgatattcaaagaacaggtagtgtatatcatgcaatttctaagtcctaatcactaaaagatacatgttttttttgtgatattagctgtatatatagcaaacacttttctaaatttatgatctgcgtctgaagtatcattgttgttgtatacaatatcgatgtcttctgtgtaatatatatactaggatctttagcatatgactatcgcttcagtgtcattaagatgtttagcatttactgctaagttatgaaaatatgacatggtattctaaaagaactttttttaatataaaactacccttttcaaaggatgattttctttgtggtctagatgaactaatctttattcatactcatcacaatatatgtaatatatgtattgtattagaatagccaacatagttgattaaatcatgcgacatagtatgttcttaactagttcattgaactgtttatgacattagatgattgtactcactctccagtgtatagatagattgtactcgctcttcaatgtaccaaacattcatggtcaatgtaatcagcacacgtgtcaagctattgttgtttcctcttttctttttaagatagtcgtacttaagcctgcagcatcatctcgtgttgacataggaaacattgtttttcctgtgaaggttgaaaaatctttgagggaagccacggcacaacaaaatgcacatagcgtatttgtgtcccttgcattaaaattgttggaagagcgggttcatgttgcctgcaaagaaataattacattggaaaaacaggtgagctacacatactttgttgtgtagaagaagagagagggagcaacttttgttaggatttgttgtgccttagttgacatgtagtaaattcgattaacttgccttgtagaccaagcttcttgaggaagaagagaaagaaaagcgtgaagaagaagagcgcagggagaggaggagaacaaaggagagagaaaagaagcttagaagaaaagaacgtttgaaagaaaaggaaaaggagaaagaaaagataccagttcaattgaaaccttacattggtacctcgtcatcacccctgagcaactcagcaacaccaattaatgatcagtcaccagatattgcccactccaaatactcagctagcgatgatgaagataaagatagtattgtggtcacggaatcgttctctcctgatacctgtgttgatcaatctctaacaagggaaagtgatggacaaagcaatgagtttcattgcagtacaacactggaatttattccatcagattgcaatggttctttcatgtgtgaacaatctacatcctcaaggaggaaactcagatttagaagggattcccttcaagaacagaccactggtttttggtatgaagattgccaagatgacactgggggtgttggaaatattcactggcaatctagggagagggcaaggaatgcaggtagaggctgcaactctttgttcagtgcgaataaccggacaagagaaaggtatgagtacaatgcctgcagttgtggccagcaggaagattatgggtatttttctccaacagctagatcaagtagagagatgaagatgtccaggaaaacaatggttgagaagccctggttacagtaccgcaggtgctatccattggatagcttcatagtgtcaaaaggaagccgagttggtagtacgccaaacaagaatgcagctccaaaacaagtatgggagccaatggatgctagaaagaaagctagcttagggagttcgaatggttcttctgaaacagttagcggtgttgatcgatccaatcaagtggggtgttcaaaggatattgtcaattgtagccaaatacttggctcggagcatgaagaactagctgaagcttgcaaatcgataacagatcagccatgtgaaagcagtgaaaataatcaagctgcttgcaatagtgaacctcctgtggtgaacaagccagacagctgctttaccaaagatggtggtcagacagcaaacatgaccagttcagatagctcttcatgtctaagcgagggagacagagatagtagcatgagcagcatgacctcattgagtgctcagaatccggaatcctcgtctacttctgattcagaaggatcttcagaaaggaacaatagcaacccaggcaatccaccaaccaagaacggttcgcgttcattacttgaaatgtgcgcaggaaatggtttcagagaataccagccacagaatattcacccttctgatggcaatcaatttgggtttggtgtgacccctttccaggagcagctgttacatcagcaaaagattcatgcagctccatacccgtcaaccttgatgggtttccataatcatcacatgtcagttccaacaaatggatacctagcataccctcaacctggtcatttctacccaaatgctgttggatatggtgtggctggaaaccaatgtgttgacttcccaatgcagtacagtaatgtgcatccttatgcaggtcctgaatttggttatgtgcctgcacagccagtccataagactccggtgaactttaatgccatggtgccaactgctgcgctctttagaaatggagcgccagaagtcataaaccctgtcattgtaaaaccagacaggcagcatcgccatacccttcctcctgagccgaagcgggtggatcctgatcctcagaacggctgttcagaagataacaagaagccgcaagatggctctgtgcctttctcgttgttccatttcaaccttcccatatcctcgcctgcccaggcatcatctgaagacgaggtgagtggaggatgtttggcgtcgagatcgccaactccaagtgctcaaaaagctcagccttgctcaagggaggagaccaacataaaggagtacaacctgttctctgcaaggactggagtggaatttcccttcttctagacaacagacgcgcctattatttggcacagaacaatacatagcgagtgatttgtattctccaaaaaaacaaaaacaaaataagttacctcgaggtttttaccgtgttccctcgaatatttatttatttcttcttccatttgttttggttgcccttgtgtgtaaggaaattgcaaagatagtgagtggtatagtttctaaattttgagatatgttaaatgtttgttgtcccgttt</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0105400, RefSeq:Os10g0105400