Os04g0474900

From RiceWiki
Revision as of 11:14, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0474900| Description = Similar to Cyanogenic beta-glucosidase precursor (EC 3.2.1.21) (Linamarase) (Fragment)| Version = NM_001059606.1 GI:1...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0474900

Description

Similar to Cyanogenic beta-glucosidase precursor (EC 3.2.1.21) (Linamarase) (Fragment)

Version

NM_001059606.1 GI:115458941 GeneID:4336146

Length

4937 bp

Definition

Oryza sativa Japonica Group Os04g0474900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:24161007..24165943

Sequence Coding Region

24161315..24161483,24161574..24161682,24161912..24162014,24162105..24162136,24162552..24162769
,24162849..24162964,24163481..24163736,24163970..24164057,24164195..24164272
,24164448..24164523,24164742..24164800,24165422..24165491,24165775..24165921

Expression

GEO Profiles:Os04g0474900

Genome Context

<gbrowseImage1> name=NC_008397:24161007..24165943 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:24161007..24165943 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcagctgcaggggaagtggtgatgcttggtggcattctcctccctctcctcctggttgtcgccgtctccggtgagccgccgccgatcagccggaggagcttccccgaggggttcatcttcgggacggcctcgtcgtcgtatcagtatgagggtggcgccagagaggggggcagaggaccaagcatctgggacacattcacacaccagcacccagataagattgctgacaaaagcaatggggacgtggctgcagactcctaccatctatacaaggaagatgtgcgcatcatgaaggatatgggagtggatgcatataggttctccatctcatggacaagaattcttccaaatggaagtctgagcggtggaatcaacagagaaggcatcagctactacaacaatttgatcaatgaactattactgaaaggggtgcaaccatttgttacccttttccactgggactcgccacaggcattagaagataaatataatggatttcttagccctaatatcataaatgactataaggagtacgctgaaacctgcttcaaagagtttggtgacagagtgaaacattggatcaccttcaatgagcctttgagcttctgtgttgcgggatatgcatcaggtggcatgtttgcaccaggccgctgttcgccttgggagggaaattgcagtgctggcgattcaggaagggagccttacaccgcatgccatcatcaactacttgctcatgcggaaactgttcggttgtacaaagagaaatatcaggtcttacaaaaggggaagattggaataactttggtctcgaactggtttgttcccttctcccgctccaaatccaacatcgatgctgcaaggcgtgctttagacttcatgcttggatggtttatggatcccctaattagaggcgagtaccccctaagcatgagagaattggttcggaatcgcttgcctcagttcactaaagaacaatctgagttgatcaagggttcattcgattttattggacttaattactacacttcaaattatgctggtagccttcctccatcaaatggcctcaataacagctatagtactgatgctcgagctaatcttactgctgttcgaaacggcattcccataggtcctcaggctgcttcgccttggctttacatctatcctcaagggttccgtgaattggtgctttatgttaaggaaaactatggcaatcctaccatctacatcaccgaaaatggtgttgatgaattcaacaataagaccttaccactccaggaagccttgaaggatgacactagaatagattactaccacaagcacctcctttcactgctaagtgcaataagggacggagcaaatgtgaagggatactttgcatggtcgctgcttgataacttcgagtggtcgaacggctatactgttcgctttgggataaactttgtggattacaatgacggagcgaagagataccccaaaatgtctgcccattggttcaaggagttcctccagaaatga</cdnaseq>

Protein Sequence

<aaseq>MAAAGEVVMLGGILLPLLLVVAVSGEPPPISRRSFPEGFIFGTA SSSYQYEGGAREGGRGPSIWDTFTHQHPDKIADKSNGDVAADSYHLYKEDVRIMKDMG VDAYRFSISWTRILPNGSLSGGINREGISYYNNLINELLLKGVQPFVTLFHWDSPQAL EDKYNGFLSPNIINDYKEYAETCFKEFGDRVKHWITFNEPLSFCVAGYASGGMFAPGR CSPWEGNCSAGDSGREPYTACHHQLLAHAETVRLYKEKYQVLQKGKIGITLVSNWFVP FSRSKSNIDAARRALDFMLGWFMDPLIRGEYPLSMRELVRNRLPQFTKEQSELIKGSF DFIGLNYYTSNYAGSLPPSNGLNNSYSTDARANLTAVRNGIPIGPQAASPWLYIYPQG FRELVLYVKENYGNPTIYITENGVDEFNNKTLPLQEALKDDTRIDYYHKHLLSLLSAI RDGANVKGYFAWSLLDNFEWSNGYTVRFGINFVDYNDGAKRYPKMSAHWFKEFLQK</aaseq>

Gene Sequence

<dnaseqindica>4461..4629#4262..4370#3930..4032#3808..3839#3175..3392#2980..3095#2208..2463#1887..1974#1672..1749#1421..1496#1144..1202#453..522#23..169#gggtcacacacacatactccccatggcagctgcaggggaagtggtgatgcttggtggcattctcctccctctcctcctggttgtcgccgtctccggtgagccgccgccgatcagccggaggagcttccccgaggggttcatcttcgggacggcctcgtcgtcgtatcaggttaagcttccacttcccttccaatcctacagttcgattggtaccgaactcagttctctacttctctcaagaacatttgttacaagttgcaaaaggctctctctctctctcaatctacagatatgatagatgtacaacactaaaatgacagacacaatattttctattgaataatgccaaaattgtcaggaatgtatggcctgatctaataggcattgggtgccaattgtgtctttgttttggtctgaaatctgaagaattggccgttgcttcacacatgcagtatgagggtggcgccagagaggggggcagaggaccaagcatctgggacacattcacacaccagcacccaggcatgttaattacatctcccgtttgcctccgccttccatgctacacatcaatacagttttgtgttagtcaagcttaactaagtatgatttatatgttgacaaaaaaaattaatcataattagcaacatctctacttcaatcaacgataccctgcatatacatatggtattgtagaagatgtgcgtctggctgtgtgatcatgttttttgctttccaggttggttggttttatttatagttagacgatctgattatctaaaatggaatcattatctgttattgatcgtggcgattcatggggaggttgtgtggaagattttgctcttcctaatagttcagtgggtatcttgaactagtagtccaatcatgtctttttttaaaaaaaacaatcataacccaattaagatgattgatcaagcagtcactatcgtctccaagacctttcatccacacatttgttattgcattcaattagcaaaacaagctttgaattcttgacctattgtacacaatagtccaaaagggcaaatgaagaaacttgagcgtatgattgatataaatgacaagaaacaacagacaaggacacatcctctttttattgacaattctctggtttgacagataagattgctgacaaaagcaatggggacgtggctgcagactcctaccatctatacaaggtatagaaattagcctttttcaagtagcagcttatggtttttttaattgatttttttttgtaagggttatgctccaattaaaatatactctaaattgtgttaggttgttctactccctctaggagagtaggagataatctcttcacattttaattccaaccttctttcggaaaaaataatttactacttatccagaggaacttgcaaaaccaatgcaggaagatgtgcgcatcatgaaggatatgggagtggatgcatataggttctccatctcatggacaagaattcttccaagtgtgtggctatatcttccagacctgatgcaatgcactgtcaaacgcatatagaaagataactttaactcatctgaagttgatctcatttttattctgaagtataagaatttgcatatctttctgactacaagttgatccctggagagacattaaaatctcacttgtcatggcagatggaagtctgagcggtggaatcaacagagaaggcatcagctactacaacaatttgatcaatgaactattactgaaaggtatgcaactcttcagtggttttatctaaaaagaagtgttcagtgttaagtttccagttcagttcagtggctacatgcaatatgtgtggaccattggatattttttttcaagatgcataatagtcttacacttgcaggggtgcaaccatttgttacccttttccactgggactcgccacaggcattagaagataaatataatggatttcttagccctaatatcatgtgagtccacaattcttcagtacctttttcttgttaaataaatcactagttaaacatggattaattgaattggaaactgttcaagtttgtaagatagagatgttattgtaccaaaaatcaaatacgcgctgacttcacccaaaataataccttcctgtatcttttcagctaaaacatctaaagttactgcgaaaaagaaggtgctaaaattactgactgaaaaatcgttgcagaaatgactataaggagtacgctgaaacctgcttcaaagagtttggtgacagagtgaaacattggatcaccttcaatgagcctttgagcttctgtgttgcgggatatgcatcaggtggcatgtttgcaccaggccgctgttcgccttgggagggaaattgcagtgctggcgattcaggaagggagccttacaccgcatgccatcatcaactacttgctcatgcggaaactgttcggttgtacaaagagaaatatcaggtcaccaaaagaatccgtttagcacttgcaaatcatccgtgataatgattttgatagtccaaaatgtttttcttgcttgtcatttagtttcagtgctgtcctggtagtagatttgttagtagagctcttagccaattactttaggaaccgcagctagctattctagacatcgaatataacgactaggttattacatatacatgtggatagactaatgtatgtcttttattaaaaaaaaaaactcatgcaatttactactcataataatatattgtaaaccttataaattgatatttgaatccgaatgtaatgtttgtagatatgttttagttctaattaatatggaatgaaaaacaccctgactgtacatgcacatcgaactcaagaagtacttcatgcaagaaaagaaaacacagaacacttagtagaatatatgtaatgtttgcaaaatcaaagatttgggttcaacatacagacatccttgcggttgatcaataaaatgcttgtcaaattcaggtcttacaaaaggggaagattggaataactttggtctcgaactggtttgttcccttctcccgctccaaatccaacatcgatgctgcaaggcgtgctttagacttcatgcttggatggtaaattctctgccacacataatttgaacattcatgtctaaaccaggcagaaggcacaaactatgaattccctttgtaggtttatggatcccctaattagaggcgagtaccccctaagcatgagagaattggttcggaatcgcttgcctcagttcactaaagaacaatctgagttgatcaagggttcattcgattttattggacttaattactacacttcaaattatgctggtagccttcctccatcaaatggcctcaataacagctatagtactgatgctcgagctaatcttactggtgagtcaaaaaaagtaatgaatttgtcgttctgttttaaattcgcatttcacagtgtttgcaaccgtgaaatacaatcatatgacaactttctggcacaaaatatacttaaaactgtagcataagcatttagccagctcatatcatggtctctgttgcatttttcaattatcctttttgtttcaaaagggttcatcaaatttcctccctataaatatccatgctctttcatgcatgaatgaaatgaaagtaatgcacaaagataagtaagtataggtaatctagtaattttcagtacgtttttaattagtttgtgcacaaggaaacaatacacactaaatgcattatcaaatactatgtactccccaacattattgcctcatcaatatatgctaaccttgtctgattatgccagctgttcgaaacggcattcccataggtcctcaggtaactccatactttgtcctccacacaaaatgaattaacagctaaataattcacgtgagatattgaattctgtaaatgacatgtatgtaggctgcttcgccttggctttacatctatcctcaagggttccgtgaattggtgctttatgttaaggaaaactatggcaatcctaccatctacatcaccgaaaatggtaagtgctactgtgctagtcaatatgttatccagtgtttagtgtgtaactgatactactattacaccttccgacattgcaatgaattaagtcaacaatacagtaaaaacacatttgaatcaattatattttcctctcctggctatttgaagaggggggaatatctcctttcctaagagttaatgaatcttattgattttctttctctttttttttttggtgtcttaaggtgttgatgaattcaacaataagaccttaccactccaggaagccttgaaggatgacactagaatagattactaccacaagcacctcctttcactgctaagtgcaataaggtatgaacttcgagcatatcatacactcatctttgagtaagagtacttcagatgttagttgacagtgcattactccatatgaatttctagggacggagcaaatgtgaagggatactttgcatggtcgctgcttgataacttcgagtggtcgaacggctatactgttcgctttgggataaactttgtggattacaatgacggagcgaagagataccccaaaatgtctgcccattggttcaaggagttcctccagaaatgatgaaaataaaagcgtgtgaagagttgcacacattgctcttcccattttgaacagcaaagagcatatatgttacaacagatggaggtattgcaagtttgcaactaaataaatctctgtcttcactctctgcgtatagctagctaagcgatggatagagagttacatcttctcttacgcatatttcaaaaaatttaagaggttgtagtaacttcttcatcatattttggagatgcgatcatagcacagtggcagaggttgctggcatgcaccgtccacgcaggttcgattctccttgagcacggctcacc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0474900, RefSeq:Os04g0474900