Os04g0476800

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Revision as of 11:14, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0476800| Description = Similar to TA5 protein (Fragment)| Version = NM_001059618.1 GI:115458965 GeneID:4336158| Length = 4520 bp| Definiti...")
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Gene Name

Os04g0476800

Description

Similar to TA5 protein (Fragment)

Version

NM_001059618.1 GI:115458965 GeneID:4336158

Length

4520 bp

Definition

Oryza sativa Japonica Group Os04g0476800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:24266100..24270619

Sequence Coding Region

24266444..24266452,24266543..24267256,24267347..24267496,24267598..24267810,24267906..24268020
,24268128..24269509,24270426..24270488

Expression

GEO Profiles:Os04g0476800

Genome Context

<gbrowseImage1> name=NC_008397:24266100..24270619 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:24266100..24270619 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtctcgccgccgggacgctgcgccgacggcgcgcgagggcgagagggatctcgtcgtgaaggtaaaattcggtggcactcttaagcggttcactgcttttgtgaatggtccgcactttgatcttaatctggctgctcttcggtcaaagattgcgagtgcttttaagttcaatccagatactgagtttgtactcacctatactgatgaggatggggatgttgtcatactggatgatgatagtgatttatgtgatgctgccattagtcagagactgaaccctcttaggattaatgttgagttgaagagcagcagtgatggggtacatcagacaaaacagcaggtattggattccatatctgtaatgtccactgctctggaagatcaattggctcaggtgaaattagctatcgatgaagctttaaaatttgtaccagaacaagttcccactgtccttgcaaaaatatcacatgacttgcgttctaaagctgcatcatcagcgccatcattggctgatttgctggaccggcttgctaaactgatggcaccaaagagcaaaatgcagtcttccagtggttctgctgatggttcatctggctcctctagtggtaggggacaaactttgggaagtttgaatattaaaaatgacactgagctcatggctgtttcagcttcgaaccctctggatatgcataactctggatcaactaaatcacttggtcttaagggtgtgcttcttgatgacatcaaagctcaagctgaacatgtatcgggatatccttattatgtggataccctttcaggctgggtaaaagttgataacaagggaagtaccaatgcccaaagtaagggcaagtctgttacatcctctgctgtgccacaagttactagcattggtcatggtgcacctactgttcattctgctcctgcttcagattgcggtgaagggttaagaagtgatcttttctggacacaactaggcctttcttctgagtcctttgggcctaatggccagattggtggtgatttgaactcgacatgccctcctccaccactgtttccccgttacccacttcagtctctccgagctgataaaagcagtatcaagggtggttgctcttaccctccgtgcatctgcaaaagtagcacatctaagcctgagaatctctcccattacccagttcagtccctccaagctgacagaagcctaaagggtggtcactatttccctccatgcacctgcaaaagtaacacatccaagccagataatctctcaccagtcggtctttatggaccttattctgaaggcagcagctgtaataggtgcccatacagggatctaagtgataagcacgagagcatggcgcagcacacactgcatagatggatacagtgcgatggctgtggggtcactcctatcgctggttctcgctacaagtcaaatattaaagatgattatgatttatgcaatacctgtttttctcgaatgggcaatgtgaatgaatataccagaatagacagaccatcttttgggagtagacgatgtagagacctcaatcagaaccagatgctctttccacatcttcgacagctacatgattgccgcttcattaaggatgttactgtccctgatggaacagtaatggcaccatcaaccccatttacaaagatttggcgcatacataacaatggatcttccatgtggccatatgggacatgtcttacctgggttggtggacatctatttgcacgcaacagctcagttaaattagggatctcggtggatggtttccctattgatcaagagatcgatgttggtgttgattttgtcacacctgcaaagcctggtgggtacgtgtcgtactggagattggcatcacccactggccagatgtttggtcagcgagtttgggtttttattcaggtggagcacccggtcaaaaccagtagcaacaagcagagtgctgctataaacttgaacatgcccccagaaggaagcaacacagaatggaagcattctgttgatgcaaatattcagtctgcagatattgtgggtaaatactctggaagcaccataactgatcctcttgcacatgcactataccatgaagccaccaaaccgatggaacctgagcttgtttcaagtgccgtaccttctgtacctagagcatttgaatcagtgctagtgccagctactgatctcctcacttcatctgctggagctgaaaaggcttcgaagcctgctgccacgcctggacctgcacctcaagccgttcccctgccaaaacctgttagcattcctgcatctggacctgcgcctgctcctgttagtgcgactaccgctgcacctgtcggagctgctgctgctcctatcagtgagcccactgcacctgctgctgccattggaatgccctctgcaactgctcgcgctgcttcttgcctgcctaccgagccttcatctgatcacatcagtgccgtggaggacaacatgctgagagagctggggcagatgggcttcgggcaagtcgacctgaacaaggaaataattaggcggaacgagtacaacctggagcagtccattgatgaactctgtggcatcctcgaatgggatgcactccatgatgaactgcacgaactgggcatctga</cdnaseq>

Protein Sequence

<aaseq>MSRRRDAAPTAREGERDLVVKVKFGGTLKRFTAFVNGPHFDLNL AALRSKIASAFKFNPDTEFVLTYTDEDGDVVILDDDSDLCDAAISQRLNPLRINVELK SSSDGVHQTKQQVLDSISVMSTALEDQLAQVKLAIDEALKFVPEQVPTVLAKISHDLR SKAASSAPSLADLLDRLAKLMAPKSKMQSSSGSADGSSGSSSGRGQTLGSLNIKNDTE LMAVSASNPLDMHNSGSTKSLGLKGVLLDDIKAQAEHVSGYPYYVDTLSGWVKVDNKG STNAQSKGKSVTSSAVPQVTSIGHGAPTVHSAPASDCGEGLRSDLFWTQLGLSSESFG PNGQIGGDLNSTCPPPPLFPRYPLQSLRADKSSIKGGCSYPPCICKSSTSKPENLSHY PVQSLQADRSLKGGHYFPPCTCKSNTSKPDNLSPVGLYGPYSEGSSCNRCPYRDLSDK HESMAQHTLHRWIQCDGCGVTPIAGSRYKSNIKDDYDLCNTCFSRMGNVNEYTRIDRP SFGSRRCRDLNQNQMLFPHLRQLHDCRFIKDVTVPDGTVMAPSTPFTKIWRIHNNGSS MWPYGTCLTWVGGHLFARNSSVKLGISVDGFPIDQEIDVGVDFVTPAKPGGYVSYWRL ASPTGQMFGQRVWVFIQVEHPVKTSSNKQSAAINLNMPPEGSNTEWKHSVDANIQSAD IVGKYSGSTITDPLAHALYHEATKPMEPELVSSAVPSVPRAFESVLVPATDLLTSSAG AEKASKPAATPGPAPQAVPLPKPVSIPASGPAPAPVSATTAAPVGAAAAPISEPTAPA AAIGMPSATARAASCLPTEPSSDHISAVEDNMLRELGQMGFGQVDLNKEIIRRNEYNL EQSIDELCGILEWDALHDELHELGI</aaseq>

Gene Sequence

<dnaseqindica>4168..4176#3364..4077#3124..3273#2810..3022#2600..2714#1111..2492#132..194#gaaggaaacggaatttgcttacggattaaaagggaggtcttgactcaacccgtctccttctcctcctcccctccgcctcgtcgtcttcgtctcacgccaccatcgccatcgcggggcttcgtttggtcgggatgtctcgccgccgggacgctgcgccgacggcgcgcgagggcgagagggatctcgtcgtgaaggtgaggttttcttttctttctttttttaatttattttcccggctcctcgcgggtgcggtgtttctgtgctaggaatgccgcgttcttggtttgctcgcgcatgggggttttgtcgcagggaggtggggagtgggttctgttgcccgtgctgggttgtggagcgatgcgaccgggtggtagtgttgttcttgaaaggatggattttgcatctttttgggcgcccaggattagatcgtttctgtattgtttgcgattgtgaaactgtgtagaaatatcgggtccttaacgcggcgatttttgtgaggactctttcgaaatcaagattattgcagggattgtaaaatagtgtagaaatatcagtccttaacgccggcgattattgtgaggactccttcgaaatcaagattattgcagggctttttgtttttctgattagctagacaagagtacttgctatggggatttgattgtagagtatcttgatcactttgatgtatgttcctttgtaatttgttggtatgttgaatgttccagttttgcatgctatggttgaataaatctgtttaggtttgcatgatatggctgtataaatctcttcagtgtagaagacaacccacttccctcaacatgcaacggcttaacttggcagtcgtccttaactgattaatgccatgtaattttggtacttatgtagcatcaggtgctgagatttggttccgtgaattgtgttttgacgctactgttaactgaatcaacattgatcagctgctaagataagaacagaattgagttatcatttgcttaagcatcttgcctgcaaagcaaaccacttactgttctatttaagtttacctcgtgcaattttactagattattattcttatctatttctcttttaatttgcttgatgtttcaggtaaaattcggtggcactcttaagcggttcactgcttttgtgaatggtccgcactttgatcttaatctggctgctcttcggtcaaagattgcgagtgcttttaagttcaatccagatactgagtttgtactcacctatactgatgaggatggggatgttgtcatactggatgatgatagtgatttatgtgatgctgccattagtcagagactgaaccctcttaggattaatgttgagttgaagagcagcagtgatggggtacatcagacaaaacagcaggtattggattccatatctgtaatgtccactgctctggaagatcaattggctcaggtgaaattagctatcgatgaagctttaaaatttgtaccagaacaagttcccactgtccttgcaaaaatatcacatgacttgcgttctaaagctgcatcatcagcgccatcattggctgatttgctggaccggcttgctaaactgatggcaccaaagagcaaaatgcagtcttccagtggttctgctgatggttcatctggctcctctagtggtaggggacaaactttgggaagtttgaatattaaaaatgacactgagctcatggctgtttcagcttcgaaccctctggatatgcataactctggatcaactaaatcacttggtcttaagggtgtgcttcttgatgacatcaaagctcaagctgaacatgtatcgggatatccttattatgtggataccctttcaggctgggtaaaagttgataacaagggaagtaccaatgcccaaagtaagggcaagtctgttacatcctctgctgtgccacaagttactagcattggtcatggtgcacctactgttcattctgctcctgcttcagattgcggtgaagggttaagaagtgatcttttctggacacaactaggcctttcttctgagtcctttgggcctaatggccagattggtggtgatttgaactcgacatgccctcctccaccactgtttccccgttacccacttcagtctctccgagctgataaaagcagtatcaagggtggttgctcttaccctccgtgcatctgcaaaagtagcacatctaagcctgagaatctctcccattacccagttcagtccctccaagctgacagaagcctaaagggtggtcactatttccctccatgcacctgcaaaagtaacacatccaagccagataatctctcaccagtcggtctttatggaccttattctgaaggcagcagctgtaataggtgcccatacagggatctaagtgataagcacgagagcatggcgcagcacacactgcatagatggatacagtgcgatggctgtggggtcactcctatcgctggttctcgctacaagtcaaatatgtgagttttgagttcaatggttgttctagttcatcatcgtaagttgaattggaatggaaggaaaaaaagccattattctaacatgatttgttgttttttgcgtgcagtaaagatgattatgatttatgcaatacctgtttttctcgaatgggcaatgtgaatgaatataccagaatagacagaccatcttttgggagtagacgatgtagagacctcaatcaggtgaaagcagcaacttgttcaaattcatgatcatatagttctcgtaaaacatttccagaacagtgtcaactgactgtcatctggccatttttcagaaccagatgctctttccacatcttcgacagctacatgattgccgcttcattaaggatgttactgtccctgatggaacagtaatggcaccatcaaccccatttacaaagatttggcgcatacataacaatggatcttccatgtggccatatgggacatgtcttacctgggttggtggacatctatttgcacgcaacagctcagttaaattaggggtacaccctacccttttcgtatttagtataactaccaacgaatggtcaagagtgttaggcagtattgcactaaaatgttaactctgattcggcatgtgcagatctcggtggatggtttccctattgatcaagagatcgatgttggtgttgattttgtcacacctgcaaagcctggtgggtacgtgtcgtactggagattggcatcacccactggccagatgtttggtcagcgagtttgggtttttattcaggtttgttccaccatagattgctttttcgtcctcattggctttggcacttcctttgttatctgatcatttggattccaaattcatgtgcaggtggagcacccggtcaaaaccagtagcaacaagcagagtgctgctataaacttgaacatgcccccagaaggaagcaacacagaatggaagcattctgttgatgcaaatattcagtctgcagatattgtgggtaaatactctggaagcaccataactgatcctcttgcacatgcactataccatgaagccaccaaaccgatggaacctgagcttgtttcaagtgccgtaccttctgtacctagagcatttgaatcagtgctagtgccagctactgatctcctcacttcatctgctggagctgaaaaggcttcgaagcctgctgccacgcctggacctgcacctcaagccgttcccctgccaaaacctgttagcattcctgcatctggacctgcgcctgctcctgttagtgcgactaccgctgcacctgtcggagctgctgctgctcctatcagtgagcccactgcacctgctgctgccattggaatgccctctgcaactgctcgcgctgcttcttgcctgcctaccgagccttcatctgatcacatcagtgccgtggaggacaacatgctgagagagctggggcagatgggcttcgggcaagtcgacctgaacaaggaaataattaggcggaacgagtacaacctggagcagtccattgatgaactctgtggcatcctcgaatgggatgcactccatgatgaactgcacgaactggtaagttcaggatgtctcattcctatgcaccatattttgtcattgcgggtaagagttaatctgaacctttgcttcttatttccccatcagggcatctgatcagaacggagatgaacaaggcgctcaccaaggacggcgaggaagcatgtggccgtgaatcttttttgcccctcctagaagggccagtgatgacctcgtcgtgttcagctattgagcaccttgcagtatccaagatatagaccgtagtatatttataaatagcttacctagttaaaagcggcgttcgtgctgctgtgctacccctactcgccagcaaccttagagggtctggtgtagtgccagtagtggtgtttaaagacttctaatcatcggtgtgtaatcgaaataagtaccgtacctactagttgtttattatgctatatgatgtattaaacttgtgttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0476800, RefSeq:Os04g0476800