Os04g0501700

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Revision as of 11:16, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0501700| Description = Spc97/Spc98 family protein| Version = NM_001059766.1 GI:115459261 GeneID:4336312| Length = 6010 bp| Definition = Or...")
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Gene Name

Os04g0501700

Description

Spc97/Spc98 family protein

Version

NM_001059766.1 GI:115459261 GeneID:4336312

Length

6010 bp

Definition

Oryza sativa Japonica Group Os04g0501700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:25446974..25452983

Sequence Coding Region

25447067..25447135,25447236..25447300,25447391..25447454,25448115..25448249,25448338..25448469
,25448779..25448862,25448947..25449045,25449301..25449392,25449589..25449661
,25449785..25449937,25450030..25450149,25450235..25450288,25450497..25450580
,25450740..25450814,25450894..25451037,25451113..25451238,25451325..25451432
,25451507..25451569,25451649..25451723,25452218..25452411,25452502..25452628

Expression

GEO Profiles:Os04g0501700

Genome Context

<gbrowseImage1> name=NC_008397:25446974..25452983 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:25446974..25452983 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatcccgcgccggcgacccctcgctggaacctggagcggccgtacctcaccggccgcttccatcaggaggccaaggtggctgcggcggcgcagggggccggatccaagccttactccctcgactccttcagccgcggcggcggcggcggcggcggcgctgagagtgtcatcggatcgtacgccgtctcagtgcaggagcttttggtcattgatgatttgttatcagctcttgtgggtattgagggacgatacatttcgattaagagagtacggggaaaggaggggtatgttgtcttccagattgattcttcaatggaccttgcactccaggaattaactcgtcggatttttcccttatgtgaggattttgtcttggtataccattttgtggagtccagatcacatttcaagagtggcctggtcaaccatgctctagctgcagcattgagggcattcctcttggattatcaggcaatggttgctcaactggagcaccagttccgtcttgggagactgtcagttcaaggattgtggttcttttgtcagaggatgatgagttcattgaacgcacttgctgttctagtcgagaaagctatctccaataacaccagtggttctgctacacttaatctacttcaaagtcaggcaaaggcaatggctggcgatagtgctgttcgatcattactggagaagatgacagagtgtgcaagtgcagcgtatcttaggatgttagaaaggtgggtctatgagggcgttatagatgatccttatggtgaattcttcattgctgaaaacaaatccttgcagaaggagagccttactcaagattatgatgctaaatattggcagcaaagatacagtctaaaagatggcatccctagtttccttaccaatgttgccgccacaatactgacaactggaaaatatcttaatgttatgagagaatgtgagtacactgtccaggttcccttgtcagagagttctaagctgatgggctttggttcaaaccaccaatatcttgaatgcatcaaatctgcgtatgactttgcaagtggtgaactcttgactctaatgaaagataagtatgatctcattgggaaactgcgatccctcaagcgatatctacttcttgaccaaggtgattttctggttcactttatggatattgcccgagaggagcttacaaagaaaccagaagaaatatctgttgaaaaacttcagtctcttgttgacatcgcgttgcgaagtacggcagctgcttcagatccaagtcatgaagacttgacttgctgtgtggaaagaagttccctccttaagaaattgagcaccctgaaagacttggattgtgcatatccttcagacaagcttgtggcagctgatgttgaccatcccatgccgttaagtgtgactggcttggaaactttctgcctgagctacaaggttcaatggccactatctctagtaatttcaagaaaatctttgacaaaataccagttgatttttcggctgttgttccactgcaagcatgttagtcgacaattgtgtacagcatggcaaattcaacaaggtttccgttctgtcaaaatcctaggaacaccagtcctacggtcatcaattctttgccgcagcatgctcaagtttgtaaacagccttttacattatctaacctttgaggttcttgaaccaaattggcatttgatgcatgatcggcttcaaactgcaaggagcatagatgaggtcatacagattcatgatttcttcctgcagaagtgtctaaaagaatgcttattgttgttgcctgaactccttgtgaaaatcgagaagctgaaagctctgtgtctccagtatgcgacttccatccagctattgataccatccattgatgttgctaagcctgaaaatacatcaaaatctagaatgccaagatcaaaaataaaagaaaccaaaaacagaggccagcaactgaaattggcatcggaaaatgttgtaatgtcagagtcaatcttgaaattcgaggcagaattcaattcagagcttcaaagtcttattcctacgctgagtaacagttcacaggcagaaccatacttgactcatcttgggcagtgcattcttggtgtgggagttgatcaatga</cdnaseq>

Protein Sequence

<aaseq>MDPAPATPRWNLERPYLTGRFHQEAKVAAAAQGAGSKPYSLDSF SRGGGGGGGAESVIGSYAVSVQELLVIDDLLSALVGIEGRYISIKRVRGKEGYVVFQI DSSMDLALQELTRRIFPLCEDFVLVYHFVESRSHFKSGLVNHALAAALRAFLLDYQAM VAQLEHQFRLGRLSVQGLWFFCQRMMSSLNALAVLVEKAISNNTSGSATLNLLQSQAK AMAGDSAVRSLLEKMTECASAAYLRMLERWVYEGVIDDPYGEFFIAENKSLQKESLTQ DYDAKYWQQRYSLKDGIPSFLTNVAATILTTGKYLNVMRECEYTVQVPLSESSKLMGF GSNHQYLECIKSAYDFASGELLTLMKDKYDLIGKLRSLKRYLLLDQGDFLVHFMDIAR EELTKKPEEISVEKLQSLVDIALRSTAAASDPSHEDLTCCVERSSLLKKLSTLKDLDC AYPSDKLVAADVDHPMPLSVTGLETFCLSYKVQWPLSLVISRKSLTKYQLIFRLLFHC KHVSRQLCTAWQIQQGFRSVKILGTPVLRSSILCRSMLKFVNSLLHYLTFEVLEPNWH LMHDRLQTARSIDEVIQIHDFFLQKCLKECLLLLPELLVKIEKLKALCLQYATSIQLL IPSIDVAKPENTSKSRMPRSKIKETKNRGQQLKLASENVVMSESILKFEAEFNSELQS LIPTLSNSSQAEPYLTHLGQCILGVGVDQ</aaseq>

Gene Sequence

<dnaseqindica>94..162#263..327#418..481#1142..1276#1365..1496#1806..1889#1974..2072#2328..2419#2616..2688#2812..2964#3057..3176#3262..3315#3524..3607#3767..3841#3921..4064#4140..4265#4352..4459#4534..4596#4676..4750#5245..5438#5529..5655#ggcttccgcctttcctcgtcgcggctatacggctattatacctaccagccaccacaccacccttctcccacacttctccactgactcctcgagatggatcccgcgccggcgacccctcgctggaacctggagcggccgtacctcaccggccgcttccatcaggtacgcctcccttctctcctcctcctcctcctcctcccctgtctcggctgcccccattgccgcctccgcctcatccaccctcgcgctctctctctcgcaggaggccaaggtggctgcggcggcgcagggggccggatccaagccttactccctcgactccttcaggtgattcgccggttaaaatttcgcgcgattttttttttggtgctcgcctcgtggtttttctgatgccccggagttcgtttgaatctgcagccgcggcggcggcggcggcggcggcgctgagagtgtcatcggatcgtacgccgtctcagtgcaggtaccggtagcttgtacttttaggttgtttagctggcttaattggcttcgagcgactacttttttaatggaccgatgctagggtttaggttccggttccgcgcttctacttcgagctcaatggttcgggttaattggaagaattcgtcgtgttttttttctctctacatgtgcatgaactgtaaattgttgttaaccagagtctggattggagctaggaatgttattgaacactgtattttgattttttggactgcctacttccttgaattcagaaaacaatattatgtaacggtgctaggttagaattttcttttgatattttggttcatgtggtcaatgtagtgtgagtagatataatttcagataataaaatattttgttacataactcgaatcttctgtttgaatttgagtgattctcagagtttgttggtcggtggtgttcatgacatactgacatgccgtgctaagtacaacatatttgttgtaacaatgtcacaaaatagctgcattttcactatgttgctttaagcagctattctatgaggctcaatattgtaatatcttcattttgcacatctttaaaattatctgaagtaatttagctttcacaaacaactgaaaagtgtaactccaacctatctgttattgatttgcaggagcttttggtcattgatgatttgttatcagctcttgtgggtattgagggacgatacatttcgattaagagagtacggggaaaggaggggtatgttgtcttccagattgattcttcaatggaccttgcactccaggtaaggcctgaagagtacaacaactggatcatgaattgcctccaaaaaggcagatgcgtttggtacttaactctttgggtttttgcaggaattaactcgtcggatttttcccttatgtgaggattttgtcttggtataccattttgtggagtccagatcacatttcaagagtggcctggtcaaccatgctctagctgcagcattgagggcattcctcttggtaaactccctctttcgagccaggaatattttaattaatttgccttgactacaagctttcttatgtttggaaaaggtggcaaaaacgaatatactaacaatttcatattatatagtaaaaacagtaatgcctgaatcatgagttcaagtgttcagttgtttattctgacatggaaacatttgcataaattgtattggtagagagtaatcttattacattatccttaaattaaaagaaggcctatgttttccagtattggtcctcatatgtgtatttggcacgaagttaagtgttttatttgtttatcaggattatcaggcaatggttgctcaactggagcaccagttccgtcttgggagactgtcagttcaaggattgtggttcttttgtcaggtgagttttatttactgcattaattatttatcctgatttgattatcattttaagcacagcaagtcctgatgtgctttttggcagaggatgatgagttcattgaacgcacttgctgttctagtcgagaaagctatctccaataacaccagtggttctgctacacttaatctacttcaaagtcaggtatttcacctctgagatacattttttttcttttgcatctctctttctccaagtacgagaatctggtgggtatgaatatcgttttcagtaggctcctgcaatccaagctgaacagactggttttcttatcggcataacatatttctttaacatagccgatttctcaacattcagttttttgttgccttttcattctggtccacatgattagctctttcatccatgtattaaattgctgtactcctttcaacataggcaaaggcaatggctggcgatagtgctgttcgatcattactggagaagatgacagagtgtgcaagtgcagcgtatcttaggatgttagaaaggttcatcatgttcatatcttattgtctttgctacttatcggttcttacattttgtgttgaagttaacaagcattttgtaattgccagttcttaattggattgtagtgttaagacttaagacttgtttagattaaaaacttaattagcttgtctgctgtattttgataatttcagcttctaatgggcttcattttaggtgggtctatgagggcgttatagatgatccttatggtgaattcttcattgctgaaaacaaatccttgcagaaggtaccgaatgacttagaatttctggcctacttaaattccatcgttctctgcattttcataagactagaatactgggtttgttatattcttaagataatcagaggctttctttgattttgataggagagccttactcaagattatgatgctaaatattggcagcaaagatacagtctaaaagatggcatccctagtttccttaccaatgttgccgccacaatactgacaactggaaaatatcttaatgttatgagagaatgtgagtacactgtccaggtatgcatgattattttctgtggttgcatcactagatgctattttatatgtgtgtgttataagaacacacttgtcttacatactatgcttaggttcccttgtcagagagttctaagctgatgggctttggttcaaaccaccaatatcttgaatgcatcaaatctgcgtatgactttgcaagtggtgaactcttgactctaatgaaagataaggttacaattgttcatagcaaatgcactattagatttcattttcttctgtggtctggattctaattttgttttatttaccgtgtagtatgatctcattgggaaactgcgatccctcaagcgatatctacttcttgaccaagtatggagaaaattgtggagaacatttactctattatgtattattactccacatcagtactctttaaaatccacactcgctgggtatattctattaatacaatgatattgatagtgacaatgcatgtcatgttgtcaacttgagtttaaacacatccatatttattttccttgtattagttctccaatttgctttctttgttttgcagggtgattttctggttcactttatggatattgcccgagaggagcttacaaagaaaccagaagaaatatctgttgaaaaacttcaggtatcctgttgtgcagtattgtctgtctgtttcttgctatagtctcatggcggaaactgatttttgactgctctggtctaagctgatccttctccagtgatatgttattccttcttcgttatatgttcttttgaatgaattgccattctatgtttgcagtctcttgttgacatcgcgttgcgaagtacggcagctgcttcagatccaagtcatgaagacttgacttgctgtgtggtaaatatatcatctatgtctcgtcaaaccgtattgtgttttgttaatcaataatatttctttgtctatttttaaacaggaaagaagttccctccttaagaaattgagcaccctgaaagacttggattgtgcatatccttcagacaagcttgtggcagctgatgttgaccatcccatgccgttaagtgtgactggcttggaaactttctgcctgagctacaaggttctatcttctgatattttttattcgttgttctaccttctgacagagaaatgatatgccaactatatatttcaggttcaatggccactatctctagtaatttcaagaaaatctttgacaaaataccagttgatttttcggctgttgttccactgcaagcatgttagtcgacaattgtgtacagcatggcaaattcaacaagtatgaatgaaccttttcttcacccccattatatcagcttaattgttttctgtttactcgttgactgatgtagaactctcaaccagggtttccgttctgtcaaaatcctaggaacaccagtcctacggtcatcaattctttgccgcagcatgctcaagtttgtaaacagccttttacattatctaacctttgaggtaaagcatccatatcaccatactaactgttaccaaaggtgaaaaattgctaaagcattcttttgggtcatcaggttcttgaaccaaattggcatttgatgcatgatcggcttcaaactgcaaggagcatagatgaggttttaacaacgttcttatgatgaagaaagatgtattgcgaaaggggtacattaccattgctgttgatgttgtttgcaggtcatacagattcatgatttcttcctgcagaagtgtctaaaagaatgcttattgttgttgcctgaactccttgtggttcgtcttcttgctcttttatatacagaagtgtttgtcgctgctgtacgttatattttcctattatctgagctctttttggagagaaaagaattaccagtgttgcaacaactttacctcctcttgttccttttaaaacttgttgctttcttgtgaaagctgaaagtaatcactgattgagttcagaattagatttcttgcgatactggcattccagtaatggaaagttaggaactaggcaggtcagtgatcaggtcatctgactgcaagataacaatggcaacttgtctctttactgttaaagaagaaagtcactgtctttaccacactgtgtatccttagcttgatttgtgtgaattatatcacccggtgactagcagttttacccttagccctctgtttcaaaaatacatggtagtttgttttacactgaaatactgtagaagattcaatgtttattttattcttattattagtatatttgtcatgtgcagaaaatcgagaagctgaaagctctgtgtctccagtatgcgacttccatccagctattgataccatccattgatgttgctaagcctgaaaatacatcaaaatctagaatgccaagatcaaaaataaaagaaaccaaaaacagaggccagcaactgaaattggcatcggaaaatgttgtaatgtcagagtcaatcttgtatgattcacatattcagtctttttcacacaatgttaattttgtatcaattgaacatcatatgatacaatcttggactgtttgctgcaggaaattcgaggcagaattcaattcagagcttcaaagtcttattcctacgctgagtaacagttcacaggcagaaccatacttgactcatcttgggcagtgcattcttggtgtgggagttgatcaatgattgctgcgcgccatgttccgcggacttcagacgattgctaagtttgcatgtgcagtgtggaattcctcatccccgtcaaggcggtgttcttgtgaatgtattgaatattgatgaaatatgcatggtatgcttcaacaagatagatagtactgtaggatttatgtagtgttagttctcttggtggtgttgggccgtgggtagtttaggcgtttctagtttgttctgtttgaagattatgattgaactcctacgaagagaaactgccctgtggtactgctgccaccaatgtaacttgaactagatgtgatgaattagtgacaccactaacaatttgtcttgggccgttgtttccttg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0501700, RefSeq:Os04g0501700