Os04g0504800

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Revision as of 11:17, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0504800| Description = Similar to Poly(A)-binding protein| Version = NM_001059783.1 GI:115459295 GeneID:4336331| Length = 6391 bp| Definit...")
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Gene Name

Os04g0504800

Description

Similar to Poly(A)-binding protein

Version

NM_001059783.1 GI:115459295 GeneID:4336331

Length

6391 bp

Definition

Oryza sativa Japonica Group Os04g0504800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:25593368..25599758

Sequence Coding Region

25593657..25593902,25594298..25594498,25594889..25595065,25595593..25595727,25596440..25596529
,25596601..25596678,25596761..25597417,25597519..25597637,25599206..25599482

Expression

GEO Profiles:Os04g0504800

Genome Context

<gbrowseImage1> name=NC_008397:25593368..25599758 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:25593368..25599758 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcgcaaatggcggcggtggcggtgaacgggggctctccgggggctgtcaccgcggcggcggcggcgggaggggtcggcgtcgccgtgggcctcgggggcggcggggcgcagtcgctgtacgtgggcgacctggaggcgtcggtcacggactcgcagctgtacgagctcttcagccaggcggggcaggtgatgtcggtgcgcgtctgcagggacatcagctcgcgccgctcgctcggctacgcctacgtcaacttcaacaaccccgtggatgctgcaagagcactggagctgctcaactttgctcctctgaatggcaaacccattcgggtaatgtactcaaaccgtgacccaagcagtcgcagaagtggatctgctaacattttcatcaagaaccttgacaaagcaatagaccacaaaactctccatgataccttttctgcatttggtaacattctctcctgtaaggttgccacagatgaaatgggccaatccaaaggctttggttttgttcagtatgacaagggagaggctgcccaatctgcaataaaaagtctaaatgggatgctgatcaatgataagcctgtttatgttggaccttttctccgcaagcaagagagagagaattctgttgacaagacaaagtttaacaatgtttttgtgaaaaatttgtctgagtccaccacaaaggaggatctagtcaaaatttttggtgcctatgggaacatcacaagtgctgttatcatggttggcatggatggtaaatcaaggtgctttggtttcatcaattttaagagcccagatgatgctgctcgtgctgttgaggaacttaatggaaagaaaattaatgacaaagaatggtatgttggaagagctcagaagaagtcagaaagagagattgaattgaagagaagatttgagcaaagcatgaaagatgctgctgacaaatatcaaggactgaacttatacatgaagaatttggatgatagcattggggatgaccagctttgtgaattgttctctaactatggcaaaattacttcatgcaagataatgcgtgatgcaaatggtgttagcaaagggtctggatttgttgcattttcaactcgtgaggaagcatctcaagctttaactgaaatgaatggcaaaatgatatctggaaagccattgtatgtcgcatttgcacaacgtaaagaagacaggaaggcgatgttgcaggcacaattttctcaggtgcgccctgtaccgatgacaccttccatggctccacgtcttcccatgtaccctcctatggctcctcttgggcagcaactcttctacggacaagctccacctgctatcatgcccccacagcctggatttggtttccagcaacagcttgttccaggcatgaggcctgggggtgcccatatgccaaattactttgttccagttgtccaacaaggtcaacagggtccacgtccaggtatccggcgttctggtgctggttctgcccagggacagcaatctgctcagccatttcagcaacagatgcttccaagaggacgtgtgtaccgttacccacctgcgcataacatgcctgatgttccaccaatgccgggggttgctggtggtatgattcaatcgtatgatatgggaggcttcccagtacgagatgctggtttgtcacctgctccaattggaacgctgacttctgcccttgcaaatgctaatccagaacagcaaagaacgatacttggtgaaagcctgtatccactggttgagcttctggaacagaaccatgcggccaaggtcaccggaatgcttctggagatggatcagacggaggtcctgcatctgctcgagtctccagaggctctgaagtccaaggttgctgaggcgatggatgtcctccgcaatgtggcccagcagcacaatgcgaacaccccgaccagtcaacttgctgcgctgtcactgggcgacgccattatctcctaa</cdnaseq>

Protein Sequence

<aaseq>MAAQMAAVAVNGGSPGAVTAAAAAGGVGVAVGLGGGGAQSLYVG DLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLNF APLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVAT DEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFN NVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVE ELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGD DQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLY VAFAQRKEDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPMAPLGQQLFYGQAPPAIMP PQPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSAQGQQSAQPF QQQMLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMGGFPVRDAGLSPAPIGTLTS ALANANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSK VAEAMDVLRNVAQQHNANTPTSQLAALSLGDAIIS</aaseq>

Gene Sequence

<dnaseqindica>5857..6102#5261..5461#4694..4870#4032..4166#3230..3319#3081..3158#2342..2998#2122..2240#277..553#accgttgagagagtctcgcctccgccgcgtgctctccgcctacggcctcttgtatcccgcaaccaaaaactactcccaaaaaaaaaaaatttctagtatcacaccaaaagaaaaaagagaaaaaaaatttcccccaaaactccgcgagatctgcccgtgccgagctatataccaatccatcagctagggtttagagcagatttttttttttgtttcgcggaaaaaaattgaaaaagagagaagggtgagggagcgaggtcgagggatcggtgggcgatggcggcgcaaatggcggcggtggcggtgaacgggggctctccgggggctgtcaccgcggcggcggcggcgggaggggtcggcgtcgccgtgggcctcgggggcggcggggcgcagtcgctgtacgtgggcgacctggaggcgtcggtcacggactcgcagctgtacgagctcttcagccaggcggggcaggtgatgtcggtgcgcgtctgcagggacatcagctcgcgccgctcgctcggctacgcctacgtcaacttcaacaaccccgtggatggtatatcgcgatctcctctcctcatcgccccccctatggccctattccatttctgctgcgcggactgcacggattgatcgctattttcacatttcggctgcacggattgattggggattctatattgttgaattgtggaaccatgtgtcagggacccaatctttgatccggtgctatctgttaactggtgaacatgggtgggtgttgagttttgtgtgtgatatctaggattctaggtatatagtgaagcaatcggtcgatgtttacgtagttgactcacatgaggcctttactatggtgcattgctgtttgcatttaatgtgtctgaatattgcggattatggcgcgcgctagctattcctagaaaggaaattttattgattctccataatggtagcttaatagcccgctaaatcatcgatgcgatggttgaactctgtagtttgtccttaatgaaagtgggatattagctgcgttcgctgggatggctgcctagccagcgaataatctcgtcgcccgcaacatgtcccagtctagttgaccgcctcactagtaggtgaacactggttaatcggggaaaaatcatcggcatggtgtggttttgtggggttaattcaagttggtgtcctcgtgttgttgcttggattgatcctttccctacttgtggctcttcaagtttatcaacatgattgtagttgattatccttttgaacataagaagtaaaaggtaatgcaactcattgggttgccaccttttaaattacaatatccactataacatgtatggatcagaaatgaggttgtggtcaacgaactactctttctccatgatcgaggaggaggaaattttctgggtagattgatactgatcatttaagtgattttcacttggctgtatctatctcaactgtaattgctctaccacttttgttggtaaataagtagcatgcaatcacgcatcagtccaaaaaaatcccaccaacattacgtctagccaaccttggacacccaccacactatgtggctaccttatacaccatgacgtacttgtgtatgcattggacctgtctgtagataagacataatgtcttacattgaattgatggtctgatttgtggattttttttaggctataggagcatgagtgtgccgaacactgaaataatttatggcatgctgatttctgggaatttatagcatatatctgttgtgatgtcctatatagatggctgctggctgttattgaactattgtttagattagtcattatctgttggatggtttccataggaatgtagaactgtcctcaatagagacttaaatttgggcaatcagaatatccatcttagagagttgcactaggtgctttgcatccttcatgtgaatgttgcacatggcatttaatggacaaatttggaatgcttttcaataatgcaattgttctggcttaaatatgtcctccaccatgttgttatcattgtcttttgcagttatgctactggtctaattcccttaatgattttaatgtaaattgggcttctgaactgataagctgttccatttgacagctgcaagagcactggagctgctcaactttgctcctctgaatggcaaacccattcgggtaatgtactcaaaccgtgacccaagcagtcgcagaagtggatctgctaacattttcatcaaggtactaggtcatttactcatttgttagtgtgtattgtcacgctaaaacaatcatcttttattggttatctctaatgcaaacaattcaactgcctttttcagaaccttgacaaagcaatagaccacaaaactctccatgataccttttctgcatttggtaacattctctcctgtaaggttgccacagatgaaatgggccaatccaaaggctttggttttgttcagtatgacaagggagaggctgcccaatctgcaataaaaagtctaaatgggatgctgatcaatgataagcctgtttatgttggaccttttctccgcaagcaagagagagagaattctgttgacaagacaaagtttaacaatgtttttgtgaaaaatttgtctgagtccaccacaaaggaggatctagtcaaaatttttggtgcctatgggaacatcacaagtgctgttatcatggttggcatggatggtaaatcaaggtgctttggtttcatcaattttaagagcccagatgatgctgctcgtgctgttgaggaacttaatggaaagaaaattaatgacaaagaatggtatgttggaagagctcagaagaagtcagaaagagagattgaattgaagagaagatttgagcaaagcatgaaagatgctgctgacaaatatcaaggactgaacttatacatgaagaatttggatgatagcattggggatgaccagctttgtgaattgttctctaactatggcaaaattacttcatgcaaggtgattcatgtcatccaccttttttccttcacttttgtttcttactgatatatgattataactaactggatttgtttgacagataatgcgtgatgcaaatggtgttagcaaagggtctggatttgttgcattttcaactcgtgaggaagcatctcaagctgtaagtttacttcctgaatattggattagctattgtatatcactgtggcttacatagttccttttatacagttaactgaaatgaatggcaaaatgatatctggaaagccattgtatgtcgcatttgcacaacgtaaagaagacaggaaggcgatgttgcaggtatagtgtagtcctttaagcagctgagtgtttgtaattgaataattcaattcatgacaacatgcatgcccaaactgctattcctagtactatttatggatatgaaaataagatatgccacatgaattactgttctgttttgcaccatcatgaactcaatgtttacaagagcaacagtaatttgtttatggttattgataatctaggcaattaagttatgattattgatatttactccctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgttaatgaatctagatagatatatatgtctacattcattaacatcaatatgaatgtgggaaatattagaatgacttacattgtgaaacggaggaagtaggtcattgggtttggcgaagaacttttaagcatcagttcagaactcattattctgtataatagttgagggaaatactgatatgcagggatgactcacaatgcatgctccatagatctgtagttgaatcctcagaaatgtatcttcaattgcctgcagtccacaacatatatttaagttgtacggctgtaccatagttcttactgctgtgttttgacaaagtttcttaataaatgctttataataactcattcttcttgttgagttgtttctgatcatttcataatgaaaaagaaatgctgacggtagcatgttccatgttatttaggcacaattttctcaggtgcgccctgtaccgatgacaccttccatggctccacgtcttcccatgtaccctcctatggctcctcttgggcagcaactcttctacggacaagctccacctgctatcatgcccccacaggtactgctcgatatcaatgcattcattttccccgtctagctttaactgtaagagagaatcaatgtgtttttgtttgtttataaaacagactagcactgccctctgcagtcaagttgttgaaattctgcattattatatatctaatggttggttggtcattgcaattggtacatcaacttcatgagtgaagtgatatcattgatcaattcctacaatacttttatgcatttagttttcaatattggttttgttgatgctgggcatatatcaggagtttgagtatggtaatcaatgccatgcaagtttttgggacacaataggttagtcattcatcaacaccattgtactaggcgttatgtctctgctgcaagcactcattttgcatatatcttgttcatttggcatctactttgaaattctactgtctgatcattatctcatagaaatgattcaaattttccatctaatgtgttgtattttctggacaatttagtagatcaatttcttaccaattttcttccatgtagcctggatttggtttccagcaacagcttgttccaggcatgaggcctgggggtgcccatatgccaaattactttgttccagttgtccaacaaggtcaacagggtccacgtccaggtatccggcgttctggtgctggttctgcccagggacagcaatctgctcagccatttcagcaacaggtttgctaatatacatccttataacattgtaccttctactgttgtgccaagttttttatgatttacggtgactgatagcgaagtagtgccatgagggaaaggtaaaaagaacccccagtgggtagtgaaatagaacatgaaaccgtgctgagctcccaagcagtggtaggggaggggaagtttgtcggtggatatatttattcaaacagcgagctattcgttttgtagtacttagaaaacccccatatccactttttcatgtatgaattctaccatttatcctttcctctcgaattttggatcattggatgggttgtccacttatccttgtcatgtggaccaattgaatgaacagtgacgacacacgtcttaccatggttcttttaacagatgcttccaagaggacgtgtgtaccgttacccacctgcgcataacatgcctgatgttccaccaatgccgggggttgctggtggtatgattcaatcgtatgatatgggaggcttcccagtacgagatgctggtttgtcacctgctccaattggaacgctgacttctgcccttgcaaatgctaatccagaacagcaaagaacggtatgtccaaattatatccctctactagttgtgtgcttaatttattattcgttttgttaccataatctatgttctgcatctgcatctgctcaagtctccataccagtaaatttaccagtatatctcatgtgaagttgagaacaaaataaaagatcgaagagagctagtaggaaaattgaaaacttgattcaaatgtgaattgtctgtaccaaccaacccactggttaccggttactgtttcacagtctgagtctgcgaagtcccagctcccaatcagcattagaaatcctgtgttttggcttggttaaacatgtatcgttcatcgaaatgcattgttgattctgcttgctaaacatgtacacctcagcttttctgatatttgtttgtctctctagatacttggtgaaagcctgtatccactggttgagcttctggaacagaaccatgcggccaaggtcaccggaatgcttctggagatggatcagacggaggtcctgcatctgctcgagtctccagaggctctgaagtccaaggttgctgaggcgatggatgtcctccgcaatgtggcccagcagcacaatgcgaacaccccgaccagtcaacttgctgcgctgtcactgggcgacgccattatctcctaatttacagtcgtagctatctttttagcttgcagttgtgtgtgatcttgcatgaggttatcggcaacatggcactttttccctcgtatggtttgacttgagtggttcgagttcccgggttggatgttaggcgttatacttctcggcctggtatccttgccattaaggccaggtacttgtttccaagtttgagtattatccggaccatccgtcacatacctcttatgcttgatcacaatttttgctgttaatgattggtgagagaaatggttggatgttaacgattgctgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0504800, RefSeq:Os04g0504800