Os04g0509100

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Revision as of 11:17, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0509100| Description = Lipase, class 3 family protein| Version = NM_001059811.1 GI:115459351 GeneID:4336360| Length = 7969 bp| Definition ...")
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Gene Name

Os04g0509100

Description

Lipase, class 3 family protein

Version

NM_001059811.1 GI:115459351 GeneID:4336360

Length

7969 bp

Definition

Oryza sativa Japonica Group Os04g0509100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:25858785..25866753

Sequence Coding Region

25858785..25859114,25859225..25859283,25859452..25859533,25860131..25860229,25860857..25860938
,25861866..25861930,25862348..25863415,25863476..25863553,25863657..25863703
,25863841..25863886,25863978..25864057,25864157..25864273,25864949..25865030
,25865263..25865388,25865522..25865596,25865850..25865975,25866649..25866753

Expression

GEO Profiles:Os04g0509100

Genome Context

<gbrowseImage1> name=NC_008397:25858785..25866753 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:25858785..25866753 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctttcgctgctcccgcgacatgcgcgtgccgcatggcgccgccgccgccgctcgcggccgcctccgtctccgggcgtgggcgctcgccgtcgtcggcgtcgagctatagggcggcggcgcggtggtggccgggcgcgaggagggggaggcggaggaggtgggcggggttgagggcgaggtgcgccgggcagtccgtcgtgaagcccgggtcggagagcgccgccggggagggtttggtcggggaggacccgccgcggccgccgttcgatctcaacctcgccgtcgtgctcgccgggttcgcgttcgaggcctacaccagcccacccgaggatgtgggctggcgcgagattgatgcggctgaatgtcagacggtgttcctatctgattcatttctccgtgaagtatatgatggccaattggttgtgaggctgaagaaaggcgtaaatcttcccgtgatggatccttggattgtgatttcagtaattgatcaacgtaggacgaaggaaccaacatggaatgaagaattcacatttaacattagtttatctcgagaaaatctactacaggttgctgcttgggatgcaaaccttgttaccccacacaaacgcatgggaaatgctggattgtgccttgaatcgctttgtgatggaagtaatcacaacgttacggttgaattagaaggcctaggtggtggtgggactattgatgtggaggtcaggtataagagttatgatgacattgagcgtgaaaaacaatggtggagaataccttttgtgtctgactttcttgtgaagagcagcctaggatctgctcttagaacggtccttggatctgaaagtataaatgcaagtcagtttgtgcaatctgcatttgggcaactaagttctttcacttacacatatcttccaaagccaccatctttggatattagagctgaggcccctaaaagggctgaacaatctgtagataactcggctggatcaaatgaacttgaacagtacaagatggattcaaaagcttctggagatgattcagattgttgcagtgaagctgaatctactgctacagttgtgaacactgaaggaagcagctcgccaaatatgaaggaaacagatgaatacttctggaaagctttcaccagtgtactcaaccaaaatgttctccaaaattttggattttctcttcctgaggtcaagcaattggatggatttgacctattgagttcacttggcttaaaatcaagtgaaatcgctgaaaaggaatatttagaatctggactagcaacagtagatgcatcaatcagtgaaggccatgaaacaactcctaaagatgcaatcgatgttgacaaagaagatggcactattccaattaaagagaacttgcctaaagaggaggtgcaggctccctttccagacgttagtaaagtttctcgggatgtattatctcaaactgagaatatactaggagctttgatgcttctttctagaagcttatcaccacaagacaaggagtcagtaatggtggatgatggaagtaataaagaagattcggtcaaagaggaacaatgtgcttctgattatacagataatgatgatgatgctgtatctactgaagtgttcactgatgcacagaaagcagaggataggcaacgactgtttgagagtgcagagactgccatggaggcatgggctatgcttgccacttcattggggcgtaacagttttataaaatcagactttgagaagatatgttttctcgacaatgtttcaacagatacccagttaaaatctctgaaggttgccatttggcgtgattgttcacgaagaaggttggttgttgcctttagaggaactgaacaatcaaaatggaaggatttgctaactgaccttatgctagtgcctgctggactaaatcctgagaggttgggtggtgacttcaaacaagaaattcaagttcacagcggattcttgagtgcatatgactctgttaggaatagaatcatcgctcttgttaaatatgccgtaggataccaggatgaagaagacggagaaaacatacctaagtggcatgtctatgtgactggacatagtttaggtggagcactagcaacccttcttgctcttgaactttcatcaagtctaatggccaagagtggggtcatatttgtgacaatgtacaactttggctctcctagagttggaaatagaaggttcgctgaagtctacaatgcgaaagtgaaagacagctggagagttgtcaatcaccgtgatatcattcctacagtaccacgtcttatgggctattgccatgtggaagcaccagtttatcttaaatttggagatctaaaagatgcactggtagatgaggagactatagatgatgaaggtgattccataggggagtacacccctgatgttcttgtcagtgaatttatgaaaggagaaaagcaacttgtggaaaaactacttcagacagaaataaatttgctccgatcaatcagggatggttcagctcttatgcagcacatggaagacttttactacgtcacactgctagagggctactgccgttcagcttctttggctgatagatatcaagaaacattgcaaacaatggaacctgtgcaggaccagtttaggggttatggtcgaactcggaagtaa</cdnaseq>

Protein Sequence

<aaseq>MAFAAPATCACRMAPPPPLAAASVSGRGRSPSSASSYRAAARWW PGARRGRRRRWAGLRARCAGQSVVKPGSESAAGEGLVGEDPPRPPFDLNLAVVLAGFA FEAYTSPPEDVGWREIDAAECQTVFLSDSFLREVYDGQLVVRLKKGVNLPVMDPWIVI SVIDQRRTKEPTWNEEFTFNISLSRENLLQVAAWDANLVTPHKRMGNAGLCLESLCDG SNHNVTVELEGLGGGGTIDVEVRYKSYDDIEREKQWWRIPFVSDFLVKSSLGSALRTV LGSESINASQFVQSAFGQLSSFTYTYLPKPPSLDIRAEAPKRAEQSVDNSAGSNELEQ YKMDSKASGDDSDCCSEAESTATVVNTEGSSSPNMKETDEYFWKAFTSVLNQNVLQNF GFSLPEVKQLDGFDLLSSLGLKSSEIAEKEYLESGLATVDASISEGHETTPKDAIDVD KEDGTIPIKENLPKEEVQAPFPDVSKVSRDVLSQTENILGALMLLSRSLSPQDKESVM VDDGSNKEDSVKEEQCASDYTDNDDDAVSTEVFTDAQKAEDRQRLFESAETAMEAWAM LATSLGRNSFIKSDFEKICFLDNVSTDTQLKSLKVAIWRDCSRRRLVVAFRGTEQSKW KDLLTDLMLVPAGLNPERLGGDFKQEIQVHSGFLSAYDSVRNRIIALVKYAVGYQDEE DGENIPKWHVYVTGHSLGGALATLLALELSSSLMAKSGVIFVTMYNFGSPRVGNRRFA EVYNAKVKDSWRVVNHRDIIPTVPRLMGYCHVEAPVYLKFGDLKDALVDEETIDDEGD SIGEYTPDVLVSEFMKGEKQLVEKLLQTEINLLRSIRDGSALMQHMEDFYYVTLLEGY CRSASLADRYQETLQTMEPVQDQFRGYGRTRK</aaseq>

Gene Sequence

<dnaseqindica>1..330#441..499#668..749#1347..1445#2073..2154#3082..3146#3564..4631#4692..4769#4873..4919#5057..5102#5194..5273#5373..5489#6165..6246#6479..6604#6738..6812#7066..7191#7865..7969#atggctttcgctgctcccgcgacatgcgcgtgccgcatggcgccgccgccgccgctcgcggccgcctccgtctccgggcgtgggcgctcgccgtcgtcggcgtcgagctatagggcggcggcgcggtggtggccgggcgcgaggagggggaggcggaggaggtgggcggggttgagggcgaggtgcgccgggcagtccgtcgtgaagcccgggtcggagagcgccgccggggagggtttggtcggggaggacccgccgcggccgccgttcgatctcaacctcgccgtcgtgctcgccgggttcgcgttcgaggcctacaccagcccacccgtgagcccctcctgcttcacccgttcacctcaccctcatccttaaggttagcttcattagtccttgtaaattcgcgagtcatttggagaattgttcttcgtgtttggcaggaggatgtgggctggcgcgagattgatgcggctgaatgtcagacggtgttcctatctgagtgagttgtgcgcttatccttcttttttttattattaatttgttaattttgatagaaatatctccctagccgctgtggtgctaaactggaaagggaatggaattctgaacgcattgatatggtcatcactgtaaattttgtgaattgtaccgtgcctatgtattgcagttcatttctccgtgaagtatatgatggccaattggttgtgaggctgaagaaaggcgtaaatcttcccgtgatggatccttgggtacggtgatgtatttgttggcgaaaaaccatttattatcctacttaagttattaccgacttcttgttgatctataggtgaaacaaaataaatctctgcaggtcatacttatatgagttaaatttaccttttcttagatgagagttaaatgtacttcaattaagggatatctgaacttatctaaaaacccattgcttctcataataatcccggattatgaatgtagcccaaacaggcaaacacccaatgatttaacctgcatgttgcaatatagggtcgagcttgcccaatctaactactgttaagcagacctcttcctccagtttattaacaacttcgttttctctaaccatttcaattgcagggcacaagtgacccttacgtagttctacaactgaatggtcaaactgcaaaaagcaatattaaatgggcgtgagtaaccttttcccttttctatgtatgctggggtcttggcggaggaggatattgctgtttttttttcacacattttggaatattttgccaactaatggtttaatttctctaagcaatatttgatatgcttgaagatgttatttttctccatcattgatgcagattgtgatttcagtaattgatcaacgtaggacgaaggaaccaacatggaatgaagaattcacatttaacattagtttatctcgagaaaatctactacaggtatgagcaagctcattttcgtacaagtataataataaacactagagattagagtcttagggtgtatcattctacataccatgtcttcataacttgttgtcctaggctcctagccctattattatggcctctctcagcaaaccaactgaagggacacactacatatcttatatgctcatatttgattattattcttgttttataattcgtagaactctgcatcttggaagtggctattgctcttcgagaatcttgttcattaggagtggatcactgagattactattttaaataaaaccatttgagaaatttggcatgtcaacctctgaaaaaagcttaagctgaatgaacaatattaatgccagacatcttgacaaatcgaaataaacatatatgactcaatatggttctagaggacacggcaagtagttttatttagttaacaggacatacataagcaaactagacgtatcattctagcaagttatggtaagctgcctcgcaaatcatagtaataatagcatgcaattctgtgcagcattactcttccttttttatcaactttattacatattggtacatacagtatcagtaaatgattatttgtttaatcattttcctcaacaggttgctgcttgggatgcaaaccttgttaccccacacaaacgcatgggaaatgctggattgtgccttgaatcgctttgtgatggtaactatttttattgacgtaaaaaataaaaatgcacgctgtttgacatttccttttgttatagaaagagcttggaacctatttctgtgatggcatggatgctggtttcttttaattctgagcaggaaattctccataaagaatcatggccaaaatacatatggaacattctggaattggtcagaaaccataggagctaatcacttttatatatgatggcatatgagaaatgagcacttctcttttcattagtgatgctttcagagtactgattaatcaaaaactaacagaacgatgttctagaacaaacttgatttagcaaaacgaattttgaatatgtaacatgcccccagcatttctgatatcaagcggttcatatcttatttgttggggacttggtgtcaactcacagttgcgcacttactccctccgtcccataatataaaggattttgggtggatgtgacacattcattgtactaggatgtgtcacatccacccaaaatcccttatattatgggacggagggagtacatgtttctcagttgcatgtaattttgccgatttaaagtacttgtgatttatgaaccttcctgtgggaaaaaaaattacactgactagtttactcatttctcctcccacctttgtattaaaactagttccatgtattaacaatgactatttactcatatccacgtcatttctggtgtcatagttcatttcttattatgaagaactcgcatgtgagaattattgatattagcagtcaggctttatcttttcagataatatttaatatgaatttattttatgacttgcccttgggagaaacttacaatgccctcccaaccttttccaggatctttaatatgattcattttaaggcttactcttgggagaaacttacaatgttcttccaactttataggaagtaatcacaacgttacggttgaattagaaggcctaggtggtggtgggactattgatgtggaggtaaatccttacctcttcttttttttttggcaccagtatactctagcaaaggtgcatgtagtgaactaattgtgacctctcagagagaaaaactaagtacctttctaatgacaagaatcttactccctttgcacagcacagcaagttgtacatatatggagtagttagcatcttccccttgcacaatcttaataagtgggaaatcctttgtgctatagttgtaagtaaaatgaccatgttgctcacatgtgatgctatgcaatatatgtcgcggtttccctagcaaaaaacagttctgatgatatattgacagccacctgttatgttgcatcaatatcaatggtttcatgctttgacgaaactgtaggctttattttgttataattgttaatctaagctctaagtataacatatcaggtcaggtataagagttatgatgacattgagcgtgaaaaacaatggtggagaataccttttgtgtctgactttcttgtgaagagcagcctaggatctgctcttagaacggtccttggatctgaaagtataaatgcaagtcagtttgtgcaatctgcatttgggcaactaagttctttcacttacacatatcttccaaagccaccatctttggatattagagctgaggcccctaaaagggctgaacaatctgtagataactcggctggatcaaatgaacttgaacagtacaagatggattcaaaagcttctggagatgattcagattgttgcagtgaagctgaatctactgctacagttgtgaacactgaaggaagcagctcgccaaatatgaaggaaacagatgaatacttctggaaagctttcaccagtgtactcaaccaaaatgttctccaaaattttggattttctcttcctgaggtcaagcaattggatggatttgacctattgagttcacttggcttaaaatcaagtgaaatcgctgaaaaggaatatttagaatctggactagcaacagtagatgcatcaatcagtgaaggccatgaaacaactcctaaagatgcaatcgatgttgacaaagaagatggcactattccaattaaagagaacttgcctaaagaggaggtgcaggctccctttccagacgttagtaaagtttctcgggatgtattatctcaaactgagaatatactaggagctttgatgcttctttctagaagcttatcaccacaagacaaggagtcagtaatggtggatgatggaagtaataaagaagattcggtcaaagaggaacaatgtgcttctgattatacagataatgatgatgatgctgtatctactgaagtgttcactgatgcacagaaagcagaggataggcaacgactgtttgagagtgcagagactgccatggaggcatgggctatgcttgccacttcattggggcgtaacagttttataaaatcagactttgagaagatatgttttctcgacaatgtttcaacagatacccaggtgagatattgttgtactattaagagttttgctgtttccttgttggttggttgtctcaagttaaaatctctgaaggttgccatttggcgtgattgttcacgaagaaggttggttgttgcctttagaggaactgaacaagtatgttgtaacatcatggcatcccttgtgttttgtgaataaaaattcattgtttgatatgtctcctttgttatttactttacttttctatttgttgtttcagtcaaaatggaaggatttgctaactgaccttatgctagtgcctgctgggtaggactcgatagtcaacattatgttctctttcattcatttacagtttgccaaatgcctggtttcaaagagtgctagcattgtggtacattttgatttatgttatgtttacctgaatatttccaaattgaatgcagactaaatcctgagaggttgggtggtgacttcaaacaagaaattcaagttagtcatctatatctttattcacttgcttctgtatttcacctcactttatgctatctggtatccaacttcttgacatattacatttcaggttcacagcggattcttgagtgcatatgactctgttaggaatagaatcatcgctcttgttaaatatgccgtaggataccagtaagtatttctataatgaaacagtttctaccacaaacatatatctcctgccaagtattaagtaatctttctttgtttctattcatttttccactgcagggatgaagaagacggagaaaacatacctaagtggcatgtctatgtgactggacatagtttaggtggagcactagcaacccttcttgctcttgaactttcatcaagtctaatggccaagtaagaagctctgaatctgatatctgatcttatttgctggatatgagaggaaagactctcatattgaaatttattaagacaggggtgaggctcgaacccaacccaggtcggctagcccacaccttgtggtgctagccggaagacccttgggcctttatcatatctgaccttatttcatacagaccttatcataccattaagttcaggcttaatgtgggaataggtttcagttaaacatttaacgactcataagaaactctttggttgtgaaagatcagatgaacttggcaggtctctgacccaatttaattgtcacgctctagcaaacctttgcaggaaggaagattatatgtgctttgacccagttcaattgtcgttctctagcacaacttccattttagtatgaatagtggcatttaatagaattgaatgaacttattttgaaagatactccattgttgtaataacaataacaataatccattattgttgttgttgttgttgttgttgaaagctcccagttttatatgattgtgctataaagcaacaaatatatgtttgtatagctcttcttctgcaattgacaatctgtaaaattgcattaaagacagcttctatttccctacatccttttctacgatcattcgttcatatttatccgttcaccttttataggagtggggtcatatttgtgacaatgtacaactttggctctcctagagttggaaatagaaggttcgctgaagtctacaatgcggtaactaagaatttcaaattgaaataggcttgcattcattgattttgcatatcactctgtcgttcaaagttcaaaccggttttccttaaatcagtatctaatcatttcatcatatggacaaggttgatagtgcaaataccatctctcataatttgaaacaaaaattgaaagcagtctgcaataccacaatctgccttttgaaaccattgtgattttggactaatttctgcagaaagtgaaagacagctggagagttgtcaatcaccgtgatatcattcctacagtaccacgtcttatgggctattgccatgtggaagcaccagtttatcttaaatttggagatctaaaagatgcactggtgattagtattcttatcctatttcaatcaactttgttgtaggaatgttttttagttccattcaaagttccgtgtttttatccataagattctaaagttctcaactgaaaccattgtatgtattttgatataggtagatgaggagactatagatgatgaaggtgattccataggggagtacacccctgatgttcttgtcagtgaatttgtgagtgtcttgtgaacttaatacatttgtctgtagactcttgactagctagattctcttgattctgatgataagatgaggattctagttttctaaaaataaaaagagacacttagttgttttaattagtttcttcacaatgttctgttgaactcataataccgatgtaagttgaagaggataaatgattcttgaataaacaaatgattttgctcaaattgcaattgaaatcaggtgtattaaatccctgcagatgaaaggagaaaagcaacttgtggaaaaactacttcagacagaaataaatttgctccgatcaatcagggatggttcagctcttatgcagcacatggaagacttttactacgtcacactgctagaggtttcttaccttgcttatttttattttcaaacacacagtttgtattaaagaggaagaaaggggcagaaccatgagcacacaaacaaacctgcacacttaccttgcctaattacttgtccttgataaatattctgtttttcacatcatctctgcttttcatttcacttgttatatatcgaaagcttcctccaagtaaatttaaccaacaaaatacacttaaacttttgcagagagtgaggtcaaggtaccaaacaggtgacggtgcaaatgaagactaccatcagttaaccgcctgatcttagtacatgcttgaaactcccaaacctgggttgcctgtaagtaccactcttctaagcgcacacagcttgtacttgtcttatggatatatttggagttgttggacggtactgtagtttaggggataattcggacaaagaagaaagtttttttgggggtgtttgaggggggattggagtttgccctactgttatatgcgtaaacaaataggctttgcttgcccaacattcttttactagcaacctagcaattatccaaaaacttcagtggcactagtgcattacccttacttggtgattggtgatcgccacaaagttggttaaccccaaaatcatttgttctgactctgtgtctgatgtccgttttgagttttcagggctactgccgttcagcttctttggctgatagatatcaagaaacattgcaaacaatggaacctgtgcaggaccagtttaggggttatggtcgaactcggaagtaa</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0509100, RefSeq:Os04g0509100