Os04g0513100

From RiceWiki
Revision as of 11:18, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0513100| Description = Similar to Beta-glucosidase| Version = NM_001059837.1 GI:115459403 GeneID:4336388| Length = 4274 bp| Definition = O...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0513100

Description

Similar to Beta-glucosidase

Version

NM_001059837.1 GI:115459403 GeneID:4336388

Length

4274 bp

Definition

Oryza sativa Japonica Group Os04g0513100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:26038872..26043145

Sequence Coding Region

26039036..26039258,26039378..26039486,26040476..26040578,26040673..26040925,26041236..26041351
,26041519..26041771,26041845..26041932,26042029..26042103,26042174..26042249
,26042425..26042483,26042637..26042702,26042771..26042900

Expression

GEO Profiles:Os04g0513100

Genome Context

<gbrowseImage1> name=NC_008397:26038872..26043145 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:26038872..26043145 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcggcgtggctcgtggtgctcctcaccgtgcaccggctcctccacctctccggcgtctcggccgtcgaccgcagccagttcccgccggacttcctctttgggacctcttcttctgcttaccaggttgaaggcggatatttggagggtaacaaaggtctcagcaactgggatgtcttcactcataagcaaggtacaattgaggatggaagcaatggcgatacagctaatgaccactatcaccgttacatggaagatattgagttgatgcactccttgggtgtcaactcgtacaggttctccatatcatgggcaaggattctaccaaagggtcggtttggagatgttaatccggatggtgtagcattctacaacgcccttattgatggtcttgtacagaaaggaatacagccatttgttacaatatgccactatgatatcccacatgaactggacgagcgatatggtggatggttgagtccagaaatccagaaggacttcagttactttgcagaagtatgcttcaagctgtttggtgaccgaataaaattctggacaacatttaatcaaccgaatttgtccataaagttcagttacatggatggattttactctcctggtcgttgttctgaaccatttgggaagtgtgccttagggaattcttcaatagagccatacgtagcaggtcacaatatcatactgtcgcatgcaaatgcagtcagcgtttacagaaacaaatatcagggaaaacaaggtggtcagattggaattgctttgagcataacctggtatgaaccattccggaataccactatagatctcttggcggttaagagggctctatctttcggtgcttcatggtttttagaccctatacttcttggtgattatcccacagagatgcgtgaagtcttgggtcaaagcctacccaagttcacatcaaaacaaaagaacagactgcagagcacaaaattggattttatcggactaaaccattacacgacatgttatgtgaaggattgcatcttctcaccgtgtgaaattgatcctgttaatgcagatgcacgagtatttagtttatacgaaagggatggagtgcccatcggtaaagcgacaggagcgccattctttcatgacgttccacgagggatggaagaagcagtcacatactataaacaaagatacaacaacacaccaacatatatcactgaaaatggttactcccaagcaagcaatagcaacatgactgccaaggattttaccaacgacacaggaagaattacctacattcaaggctacctcatttccttagcctcggcaataaggaaaggagctgatgtacgtggctactttgtatggtctctccttgatgacttcgagtggaattttggatacacgttaaggttcgggctctaccatgtccactacaagacactgaagaggacgccaaaattgtcggtagattggtacaggaagttcctcacgggttcactgctgaggagaaagttcagagatgaatctcagcttcataagtttaactcttattaa</cdnaseq>

Protein Sequence

<aaseq>MAAAWLVVLLTVHRLLHLSGVSAVDRSQFPPDFLFGTSSSAYQV EGGYLEGNKGLSNWDVFTHKQGTIEDGSNGDTANDHYHRYMEDIELMHSLGVNSYRFS ISWARILPKGRFGDVNPDGVAFYNALIDGLVQKGIQPFVTICHYDIPHELDERYGGWL SPEIQKDFSYFAEVCFKLFGDRIKFWTTFNQPNLSIKFSYMDGFYSPGRCSEPFGKCA LGNSSIEPYVAGHNIILSHANAVSVYRNKYQGKQGGQIGIALSITWYEPFRNTTIDLL AVKRALSFGASWFLDPILLGDYPTEMREVLGQSLPKFTSKQKNRLQSTKLDFIGLNHY TTCYVKDCIFSPCEIDPVNADARVFSLYERDGVPIGKATGAPFFHDVPRGMEEAVTYY KQRYNNTPTYITENGYSQASNSNMTAKDFTNDTGRITYIQGYLISLASAIRKGADVRG YFVWSLLDDFEWNFGYTLRFGLYHVHYKTLKRTPKLSVDWYRKFLTGSLLRRKFRDES QLHKFNSY</aaseq>

Gene Sequence

<dnaseqindica>3888..4110#3660..3768#2568..2670#2221..2473#1795..1910#1375..1627#1214..1301#1043..1117#897..972#663..721#444..509#246..375#ggcgacatcgttctctgtctgtcccgcactcccgccttttgccaaagcggcccgcgacgcgacacagcggagaggtgcaactctgccatcgtcgtcgcttctcaaggtttatcaatatctctctctcggcgcgtatagccgtcgcgcggagggacgagccaaggccacgccgcatccacagatcgagaatcgcgacggggagaggcgaggcaccgtgtgggccgccgggaagacgcacgcacgagatggcggcggcgtggctcgtggtgctcctcaccgtgcaccggctcctccacctctccggcgtctcggccgtcgaccgcagccagttcccgccggacttcctctttgggacctcttcttctgcttaccaggcacgacggcggaatccccactcgaccatgctgcataacaagtctctttctgaactctgcttcttcaggttgaaggcggatatttggagggtaacaaaggtctcagcaactgggatgtcttcactcataagcaaggtaaataaagcatgaaacttcaatgtgtttcctttcgtttgtgcttatttctgttccctttcttccccactatacaattacttttttttttcgagaacatgtggctatgaacttgcgattatatctttgttcactcatcctatatggttttaggtacaattgaggatggaagcaatggcgatacagctaatgaccactatcaccgttacatggtaacatctcaaaagaaccgcaaattgcaagattctttcaggaaaacaaaaggaactgcgaggaattattcacggataattattctgtagaatgaacttaatactacttatagagatattctaatgaatctttctatctgtttaactgcctgatactgaaaaatctctgctccaggaagatattgagttgatgcactccttgggtgtcaactcgtacaggttctccatatcatgggcaaggattctaccaagtgagcttaacgattcagcttatatacaattggaacaaacgatgtattaaaaaaaattcttgtcgctcagagggtcggtttggagatgttaatccggatggtgtagcattctacaacgcccttattgatggtcttgtacagaaaggtatttaaataatattacaaaaatcatatgttacaagctagaacaaaattttgagggagactaaacataagagttgttaactggatatgtaaccaggaatacagccatttgttacaatatgccactatgatatcccacatgaactggacgagcgatatggtggatggttgagtccagaaatccagtatgtattttgatgttccataaacattgattcattttaactggtttcttactgatttcttattattttccaggaaggacttcagttactttgcagaagtatgcttcaagctgtttggtgaccgaataaaattctggacaacatttaatcaaccgaatttgtccataaagttcagttacatggatggattttactctcctggtcgttgttctgaaccatttgggaagtgtgccttagggaattcttcaatagagccatacgtagcaggtcacaatatcatactgtcgcatgcaaatgcagtcagcgtttacagaaacaaatatcaggtacaaggcctacccttcagacaaaaggactacaaagtgattagaaggacaagaacatcaattgttatttccacacagtttattaaatattgaaagcaatatcaatctaatccttttaattaattttttattacatacaaatttcaatattctggtcatgttgctagggaaaacaaggtggtcagattggaattgctttgagcataacctggtatgaaccattccggaataccactatagatctcttggcggttaagagggctctatctttcggtgcttcatggtattatgcattcctttaatatgcaattgtcaacatggtgctaccttgttttctactaatatgttctgatgtccaaaagtgtttgccatgagaagtagtatctgatgtgttttggtgcaagtcattcacataaatagctcattcagatttcatcacaataagaaactcaaaggactaccattatgttgatagttgtacttgaagatttcctctgctatatttttgacaatttaacaagagaataatacaaacattcaattgacatgtactccgtatgtttttgcaccgttgcctgactttttttttctaggtttttagaccctatacttcttggtgattatcccacagagatgcgtgaagtcttgggtcaaagcctacccaagttcacatcaaaacaaaagaacagactgcagagcacaaaattggattttatcggactaaaccattacacgacatgttatgtgaaggattgcatcttctcaccgtgtgaaattgatcctgttaatgcagatgcacgagtatttagtttatacgaaagggatggagtgcccatcggtaaagcggtaaatatatagttatcaaaattctaaattgttttgcagacttggaacttaaagtaaacagcaattactagtagttgcactctgactcaaacagacaggagcgccattctttcatgacgttccacgagggatggaagaagcagtcacatactataaacaaagatacaacaacacaccaacatatatcactgaaaatggtatggctctctttctccctatgttgtttctatgagctagaataatcattagcctgaacttggtaggatatttgcgggtatcatttgagtagaatatcatatacttcctattgaccccatgtgtgcagtagtgcaccaaaaaagtaattaatttttacatatcataaatagctcatataccaaaaaaatgaaaatgtacttttttagtgtttttacagtaatatacatgtctttgaaaaaaatacaaaaatatatgtttgccgtgggatggtaacgtgggactgcgtcatggacacgcgataccgcgtcgatcccacagcttagagcaagtttaatagtatagccaactactagcttcaaatcatctatagccaatataatagccaattcatacaatatttgcttattatactattaatatctggtcctacctgtcatacacacattacgtcttgaagttcgtgctgtagctggctacagatctgtagctcgtgacgcttctctcttccttttatcttttaaaaatatgtttatagctggcttatagcctgctattgtacctgctcttagccatgcggcaccacgcgggcccgcaggccgaccgtgctgcactgcgagatgaccatgtgcgaccgagcctcacgcatgcatgcatatacctcacgcgtgcacatcgtatttcttacctcacgcatgcatcttggccgttgtcgcacggctagcccgcggtaccgcgtggtgccgcccggccagcccacaggaccaacacggtaccgcgcgtaccccgtgcgggattttgtgggctgttgtcccgcgttttgcaccgggccaaacactctgccccgcattgtatattttcaatatttttccatataccctcaaacttaccttcctaagttacttctagttattacttcttgctattcttttttattatgttgtgcacactgcacagtagtgcattatcaatttgtgaatcatttttttaggttactcccaagcaagcaatagcaacatgactgccaaggattttaccaacgacacaggaagaattacctacattcaaggctacctcatttccttagcctcggcaataaggtaagctgaataactctaagcagcctcttgctaagatttggcttcagacattgcagtagtgatgtgttgccatgcctgaaaatcaagttgtgtaccctttcttgtggaacaatttgaaggaaaggagctgatgtacgtggctactttgtatggtctctccttgatgacttcgagtggaattttggatacacgttaaggttcgggctctaccatgtccactacaagacactgaagaggacgccaaaattgtcggtagattggtacaggaagttcctcacgggttcactgctgaggagaaagttcagagatgaatctcagcttcataagtttaactcttattaatccatacatgctgttcttccctttccatattactttatgtaaagtcaatatgtgatgctttagcgtacatatgcttgtacttgcatatgttcgcaattatccatcctagaccatatgcatagagtataatatgtactgaataaaagggacggatttttgtgtgt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0513100, RefSeq:Os04g0513100