Os04g0513900

From RiceWiki
Revision as of 11:18, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0513900| Description = Glycoside hydrolase, family 1 protein| Version = NM_001059840.1 GI:115459409 GeneID:4336391| Length = 4300 bp| Defi...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0513900

Description

Glycoside hydrolase, family 1 protein

Version

NM_001059840.1 GI:115459409 GeneID:4336391

Length

4300 bp

Definition

Oryza sativa Japonica Group Os04g0513900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:26079939..26084238

Sequence Coding Region

26080097..26080277,26083258..26083366,26083485..26083587,26083743..26083992,26084120..26084238

Expression

GEO Profiles:Os04g0513900

Genome Context

<gbrowseImage1> name=NC_008397:26079939..26084238 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:26079939..26084238 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>cagagcaagcagagaggaatgattggcatggtgttgtacagcacctggtacgagccgctgagagatgtccccgaggaccggcttgccaccgagcgagccttggcgttcgaaactccgtggtttcttgatccactggtctacggcgattacccaccggagatgcgccagattctcggcgggaggctgccgagtttctcgccggaggacaggaggaagctgcggtacaagctggacttcatcggggtgaaccactacacgaccctgtacgccagggactgcatgttctcagactgcccacaggggcaggagacgcagcacgcgctggcggctgtcactggagagagcaacgggcttcccattggaactccaacagcgatgcccactttctacgtggtaccggacgggattgagaagatggtcaagtacttcatgagaagatacaacaacctgccaatgttcatcacagaaaacggatacgcgcaaggtggagatagttacaccgacgcagaggattggattgatgacgaggataggatagagtacctggaaggctatctcacaaaacttgccaaagttatcagggacggagctgatgttcgtggctacttcgcctggtccgtcgttgacaatttcgagtggttgtttgggtacacccttcgatttggactgtactacatagactacagaacacaggaaagatctccaaagctatctgcgctgtggtacaaggaattcctccaaaatctgcatgaaaatcaatag</cdnaseq>

Protein Sequence

<aaseq>QSKQRGMIGMVLYSTWYEPLRDVPEDRLATERALAFETPWFLDP LVYGDYPPEMRQILGGRLPSFSPEDRRKLRYKLDFIGVNHYTTLYARDCMFSDCPQGQ ETQHALAAVTGESNGLPIGTPTAMPTFYVVPDGIEKMVKYFMRRYNNLPMFITENGYA QGGDSYTDAEDWIDDEDRIEYLEGYLTKLAKVIRDGADVRGYFAWSVVDNFEWLFGYT LRFGLYYIDYRTQERSPKLSALWYKEFLQNLHENQ</aaseq>

Gene Sequence

<dnaseqindica>3962..4142#873..981#652..754#247..496#1..119#cagagcaagcagagaggaatgattggcatggtgttgtacagcacctggtacgagccgctgagagatgtccccgaggaccggcttgccaccgagcgagccttggcgttcgaaactccgtggtactactacgaattataagatcactcgctccattgcagtgattgaacgtgctcgtaaaaaaaatgtggatttgttctgaatcaacagaggttttcttccgatttttgcctgtatgtactcttgcaggtttcttgatccactggtctacggcgattacccaccggagatgcgccagattctcggcgggaggctgccgagtttctcgccggaggacaggaggaagctgcggtacaagctggacttcatcggggtgaaccactacacgaccctgtacgccagggactgcatgttctcagactgcccacaggggcaggagacgcagcacgcgctggcggctgtcactggagagagcaacgggcttcccattggaactccagttaagcatagtttcaataagaaatcaacatctatagatgcttcgaggggattcggagattaaaactccgaaccccttgagccatttttgtcctttaacgatgtcagggacggttggaaatttaggatttaaggggttaaagaatgtacttgcagacagcgatgcccactttctacgtggtaccggacgggattgagaagatggtcaagtacttcatgagaagatacaacaacctgccaatgttcatcacagaaaacggtacgacagaacagagtgactgaacagttgtactacccctactagttgtgcagttgctttttatttctgttccatttacatgttctgagaagatttgttgcgctgaaaaatgattcaggatacgcgcaaggtggagatagttacaccgacgcagaggattggattgatgacgaggataggatagagtacctggaaggctatctcacaaaacttgccaaagttatcaggtcagttggaatattgtgcatattgccaagtttatacatgtggatgtcaaatctatctatctatctatctattatattattaaaacagttttgaaaggaggcaccacgtttgctgtgaggactaaaaattcccacattaatcggagaaaaagaaaaaaaaagaaaatgagagtccaagtagaaatacaatctaaaaatagctgaaattcggaattaaaaaataagcaatattgaaagaagtttccatataagaacccaatacgagatttatcaaaattcaaaataaaaataaaataaaaaccaaaattagaaaaggaaagaaaagtccaagtagaaatacaatttaaaaatatctgaaattcggaattaaaaattagtaatattgaaagaagtttccatttaagaacccaatacgagattaatcaaaattcgaaataaaaataaattaaaagccaaaattagaaaaggaaatgcgagtccaagtaggaatacaatttaaaaatagctgaaattcggaattaaaaataaggaatattaaaagaacagtccatataagaacccaatatgagattaattaaaattcggaataaaaagaaaaataaatccgaaattaaggcaaaagaaaataaagaagagttcaagtaggaatacaatttaaaattagctgaaattcagaattaaaaataagcaatattgaaagaagaatccatataaggacccaatatgagattaattaaaatttcaaataaaaatttaataatatccaaaattagaaaaattaaaagagagttcaagtagaaatacaattttgaaacaactgaagttgaaaataagaaataaaaacattaaaagaacacaatatggtattaactaatttttttagaaaaaataaattctgaaattagataaaaaagatttcaaataggaataaaatttataaataactaaaatttgtgataaaaataaagactattgaaagaaaagaccatctaaaacacacgacgagataaattaagtaacaggcctataaataagtagagttggtggcggttgatatggcatataaaaattgttaatgaaacaccaaatagaatcctaatgacgattaaaaggagggacgtcatgtaggacgtgaagcaaacaagtaaagcggttgccgtgacttctagaaagtaaaaagaaaaaaaaccacattgataattatttttgatttttaaaatcttaatgacaataaaaaagagaagtagcgggcggggtgtataagagtacagttgcagagcctccgacggttgacgggacttccagaaaataaaaaataaattgcaacgatagttatgttcgatttttagaatcacaatgaaaataaagagtaggcggcggacgagggctgcagaggggcatagtggcatcgtttgatgggacttctaaaaattataaaaaataaaactacaagtccaatttttaaaggttcggaacttctaaaaagttaaaaaaaaacccaatgataatcatgttcgattttaaaatctcaatgaaaataaagaagggaggcagcaggcgagccgtagaggagcataatggcaaaaccgctgacggtatggcgggacttctagaaagtaaaaatgaacccaaactataattatgttcgatttttaaaatctcaatgacaataaagagaagagatagtggacgggagtataatggcaatgtttgacgggacatctagaaattataaaaacaaaacccaacgtgacaataaactctaaaaactataaaatccaagttttaaaggctccaagaataataaatagaaatagtgatagatcgagtaagcaaataaagaaggagatgacataagaggtagcaactggtgtgattttaaaaactatgtaattagaaacacgaggatgataaggtttggtcttttaaagtcttaacattgagatagctctttaataaattttaagtaaaattatacttaaaaaaatatatgatttttttctgctagccgcgcaaattgcgcgggctacccagctagttatattattaaagaaatagaaaaaagagcctccgcgttcgctctcgtggtctagaaattctcacattaatcgaagaaaaagaaaaaacagagtccatatagaaatacaattaggaaatagctgaagttcggaattaaaaaataaggaatatcagaagaggagactagagtccatataaaaatataattaggaaataactgaaattcagaattaaaaataaggaatattaaaagtagagtatagagtccatatagaaatacaattatgaaataactgaaattcggaattaaaaataaggaatattagaagtagagtataaagtccatataggaatttaaaaataactaaaatttggaataaacataataaaattaaaattagagtttagagtccgtataaaaatacaacttataaataactaaaaattcaaaattaagaaaagcatgggaataagagtttaaagtcaatataggaatacagtttagaagtaactgaaatttgaaattaaaaattaaagaatattgaaagatgagtttagagtccacatagaaatacaattagaaataataaaaattcagaaataaaaataaataatattagaagaagagcatagagtctatatagaaatacaatttacaaaaaattcggaattaaaaaaaatattaaaagtcgagtctagagaccatataggaatatatataatttacaaataactaaaatttgatattaaaaataattaataactaacacgtatataaaatacaatatgaatattacacattaatagttttgtaaagttattgcaaaatttaaaatcatgttgtcattttaatatatttgaataatataatgagaaaacatatatgctattatatgagagaaaatataatgatgctaaccgcataatatgcgcaattgaggctcacatgctttgctactagggacggagctgatgttcgtggctacttcgcctggtccgtcgttgacaatttcgagtggttgtttgggtacacccttcgatttggactgtactacatagactacagaacacaggaaagatctccaaagctatctgcgctgtggtacaaggaattcctccaaaatctgcatgaaaatcaatagataaagttgtactttcgaatttaaatagggtgtaaaatgatagtaattcgtgtaatgatgtaactgtagtactgtacattagtacataatgttgattagaatggatacatgatatccacctatatatatccaatttattggacaatttactgtaaact</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0513900, RefSeq:Os04g0513900