Os04g0514400

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Revision as of 11:18, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0514400| Description = Putative DNA binding domain containing protein| Version = NM_001059841.1 GI:115459411 GeneID:4336393| Length = 2224 ...")
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Gene Name

Os04g0514400

Description

Putative DNA binding domain containing protein

Version

NM_001059841.1 GI:115459411 GeneID:4336393

Length

2224 bp

Definition

Oryza sativa Japonica Group Os04g0514400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:26099564..26101787

Sequence Coding Region

26099651..26100181,26100429..26100524,26100618..26100710,26100991..26101234,26101348..26101385
,26101486..26101587

Expression

GEO Profiles:Os04g0514400

Genome Context

<gbrowseImage1> name=NC_008397:26099564..26101787 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:26099564..26101787 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatcgttgccaccgccaccatcccgttcttcccctcgttccaccgcccgcggttcaggcccggcggcctcccgcgccgggttgtggtcctccggtgctcggcgtcgtcgtgggaggagcgcgaggaggcgcggtggctgcgcgaggagcagcgctggctgcgggaggagcagcggtggctccgggaggagtcgcggtggcgcgccgagcgcgagtccctcctcgccgagattgccgcgctccgcctccgcctcggcacggtcgaggcgggcccgctccccctcccgtccgtcgacgccgcagtggcgtcaccagcaccctcgcccgctgttgcggcggtgccaccgccgccgcctccgccggcggcggcgcccaggccaccgctggtggtggaggaggaggtcgaggtgaggaaggaggtggtggtggtcgagcagaaggcggccaaggcgaagagcggcggcggcgacggcggcgggaggaggacgctgagggtgggtgccgagggggaggacgtgcgcgcgatgcaggaagcattggaaaagctgggttactattcgggcgaagaagacatggagttctccagcttctcatctggcaccgaacgagctgtgaagacatggcaggcaacagtacgggtttcggagagtggaattatgacatcagatctgcttgacatgttatttacaggacaagttgggcaggatgtgaaaacaaaagatggcataaatggagcagccattccctccataacagaaattgcagagattcaacaaactgttgtgaaaggaaatggtgtctcaggagtagggttgtctgaaaatagagtgtttctcatcggtgaaaacaggtgggaagacccatctaggctaacacagaagaataaaccaatcagcagcgctaccaatgcatcaactaagaagtgcatctcttgtcggggtgaaggccgcctcatgtgcgtagaatgtgatggaacaggtgagccgaacattgaaccacagtttttggagtgggtcggtgaagatacgaagtgtccatactgtgaaggccttggttcaattgtatgtgatgtttgtgaagggaagacagtagccacgaactaa</cdnaseq>

Protein Sequence

<aaseq>MIVATATIPFFPSFHRPRFRPGGLPRRVVVLRCSASSWEEREEA RWLREEQRWLREEQRWLREESRWRAERESLLAEIAALRLRLGTVEAGPLPLPSVDAAV ASPAPSPAVAAVPPPPPPPAAAPRPPLVVEEEVEVRKEVVVVEQKAAKAKSGGGDGGG RRTLRVGAEGEDVRAMQEALEKLGYYSGEEDMEFSSFSSGTERAVKTWQATVRVSESG IMTSDLLDMLFTGQVGQDVKTKDGINGAAIPSITEIAEIQQTVVKGNGVSGVGLSENR VFLIGENRWEDPSRLTQKNKPISSATNASTKKCISCRGEGRLMCVECDGTGEPNIEPQ FLEWVGEDTKCPYCEGLGSIVCDVCEGKTVATN</aaseq>

Gene Sequence

<dnaseqindica>88..618#866..961#1055..1147#1428..1671#1785..1822#1923..2024#atccgcggctaatctcctctgctcgccgcgcgccacttcctcactcctcgcaagcggcagctcagcgccgccgtctcctcctccgccatgatcgttgccaccgccaccatcccgttcttcccctcgttccaccgcccgcggttcaggcccggcggcctcccgcgccgggttgtggtcctccggtgctcggcgtcgtcgtgggaggagcgcgaggaggcgcggtggctgcgcgaggagcagcgctggctgcgggaggagcagcggtggctccgggaggagtcgcggtggcgcgccgagcgcgagtccctcctcgccgagattgccgcgctccgcctccgcctcggcacggtcgaggcgggcccgctccccctcccgtccgtcgacgccgcagtggcgtcaccagcaccctcgcccgctgttgcggcggtgccaccgccgccgcctccgccggcggcggcgcccaggccaccgctggtggtggaggaggaggtcgaggtgaggaaggaggtggtggtggtcgagcagaaggcggccaaggcgaagagcggcggcggcgacggcggcgggaggaggacgctgagggtgggtgccgagggggaggacgtgcgcgcgatgcaggtcagcgttgtcgtgcacctctcgttctggctaggattcgcgttgcatcaactgtgtccgagctgacgcgccacagctttaatttgttcggttgcgacggacttgtggtggtcacaatatacaagctgctaactgcaatagagtaaatctgatcacacgcgacggcaaattggcaatgctctgcaccgtagcagttacaagactaatcggtagaatacataattttgagccctttgcactaacgcaggaagcattggaaaagctgggttactattcgggcgaagaagacatggagttctccagcttctcatctggcaccgaacgagctgtgaagacatggcaggttactgcttcattatttcgttcaattcaacgtatattttcagatagctaactactccataaacttgtgtaaacacgttactttctgttgcaggcaacagtacgggtttcggagagtggaattatgacatcagatctgcttgacatgttatttacaggacaagttgggcaggatgtgaaaacaaaagtgagtcaatcaacctacactttttttgctgcacaagttatcacctattaacttggtaacactattgctaagataaaggcaaactaataagaaacggttatgaacacattctgtgtttaaggaaacacaattatcttttctgaacaagaaattcgctatctacaattctgcagcagttgctcccatatatagggcctccttactttgcatataaagaaagttcaagcgataagcagtacctgtagtcatggcatgatattctaatccaactctcttgtaggatggcataaatggagcagccattccctccataacagaaattgcagagattcaacaaactgttgtgaaaggaaatggtgtctcaggagtagggttgtctgaaaatagagtgtttctcatcggtgaaaacaggtgggaagacccatctaggctaacacagaagaataaaccaatcagcagcgctaccaatgcatcaactaagaagtgcatctcttgtcggggtgaaggccgcctcatgtgcgtaggtaataacatttgctgcttggtggcacaacatgtacagcatttgtaatgtattgagaaatgagctgcttgtgagttgcgactcctgacaagacctttttctttcttcctgcagaatgtgatggaacaggtgagccgaacattgaaccacaggtaagctcgagttccagttgcaggatcgcatcatatagtgaatataagtatgctatttattctctgatatgcacctttctgtttacccctcaaaatgcagtttttggagtgggtcggtgaagatacgaagtgtccatactgtgaaggccttggttcaattgtatgtgatgtttgtgaagggaagacagtagccacgaactaagcaacgtgctggaccaacatgctgtttcatttgtgaacatctataacagtttatgtagatagatacttgccaattattcaagttctttttcacaacagttgaagaatagtattcacatggccagtgttagtgccctatacaaaaggtagtcacgtttgagacaattttgtttttgtataataggataggaaatattaacg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0514400, RefSeq:Os04g0514400