Os04g0520000

From RiceWiki
Revision as of 11:18, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0520000| Description = Nucleic acid-binding, OB-fold domain containing protein| Version = NM_001059867.1 GI:115459463 GeneID:4336421| Lengt...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0520000

Description

Nucleic acid-binding, OB-fold domain containing protein

Version

NM_001059867.1 GI:115459463 GeneID:4336421

Length

4616 bp

Definition

Oryza sativa Japonica Group Os04g0520000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:26435381..26439996

Sequence Coding Region

26435671..26436102,26436595..26436663,26437462..26437527,26438275..26438364,26438692..26438737
,26439427..26439528,26439661..26439803

Expression

GEO Profiles:Os04g0520000

Genome Context

<gbrowseImage1> name=NC_008397:26435381..26439996 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:26435381..26439996 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagggacctccagctctcgctgaaccagacccagagggtgcgcctcgaggccgcgctccacgagctccagaccgtcgcccccgccgccgccgtcaccgtcgcggacaccatccccgtcaacgacgaggacaacattctcaaggggcatgggacgtcggatcaggacggggaggtggtggcgacgctgtgcggcgtggtggagcgggtcaacaagctggtgtacgtgcggacgcttagggcgaggtataagccggaggttggtgatatcatagttggccgtgttattgagattgcacctaaacgctggaggttggagataaattttagccaagatgctgttttgatgctttcttctatgaatttacccgatggaattcagagaaggagaactgctgtcgatgaacttaatatgcggacaatttttgaagaaaatgatgttatctgtgctgaagttcgtggtttccaacatgatggatctctgcacctacaagcacggagtcaaaagtatggaaagcttgagaggggtcaactgcttgtagtacctgcatacttggtaaaacgacggaagcagcatttccaccacctcgagcaatatgatgttgacttgattcttggttgcaatggattcatctgggtaggtgagcatgttgtggtaggtgaaaacgctaatatgatggaaaataagctgaatttgagtgctgaagtggagaatttcactccactagaaacaaggaaacatatttgccggcttgccaatgctgtacgtgtgctttcagctctgggtttcactttgacagttgaactgataattgagactgctgaagcaagtgtatcatcaaatatcgagataaacaacatgcttggggctgaattttatgtccagacagcagagagagaggtaaaacgtcgagctgatctgttgcgaaagaaaagtggagcaagataa</cdnaseq>

Protein Sequence

<aaseq>MRDLQLSLNQTQRVRLEAALHELQTVAPAAAVTVADTIPVNDED NILKGHGTSDQDGEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKR WRLEINFSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGS LHLQARSQKYGKLERGQLLVVPAYLVKRRKQHFHHLEQYDVDLILGCNGFIWVGEHVV VGENANMMENKLNLSAEVENFTPLETRKHICRLANAVRVLSALGFTLTVELIIETAEA SVSSNIEINNMLGAEFYVQTAEREVKRRADLLRKKSGAR</aaseq>

Gene Sequence

<dnaseqindica>3895..4326#3334..3402#2470..2535#1633..1722#1260..1305#469..570#194..336#aggcttgcattgccgtggcggcggctgcgctgcgcctccgtgttcctcgagaccggccgaacccgcgccggatttgggcaggttttactagggtttttgccgatccgcttcccttccgccgcgccaccctctactctaccctactcctcccgcttcctccgcgcctacctgcgtgctcgcgaggccgcccgccatgagggacctccagctctcgctgaaccagacccagagggtgcgcctcgaggccgcgctccacgagctccagaccgtcgcccccgccgccgccgtcaccgtcgcggacaccatccccgtcaacgacgaggacaacattctcaagtgagagctaggcacttccccccttgtctctcccccccccccctcccaatctcgtattagctttcgtgtgtggcggcagtacggctggactgatggggggtttctcgttttcctctctctctctgcgcgcagggggcatgggacgtcggatcaggacggggaggtggtggcgacgctgtgcggcgtggtggagcgggtcaacaagctggtgtacgtgcggacgcttagggcgaggtactcaagctctaaccttcctcggattcactgacgtatcatagaatcaattttccagcggttttacccgtttcttatgaaccttgaaaagcggttcatttgcgtgctcctttattggataactctggcagaacaatggtattttccctgggcgttttgttataggactagcttccgagatgagagcggggtttatgttattgtaccgagtccagtagtagattttgtggggtggatgttgatggactgatggagtatatgtagaatggggattatggattcaatttcgaagcactcaggcagtggtaacaacttgtgatatactgtgctgcagctggatttgttctgagcctgtaatttgcaccaaatcaaaccatagatttgatatattttggctgtggaaatgattggtacagaccattacaacttctttatgaattcattaaaagtttgctaccatggaagagacatactttgaattactttacaagttcgtaatgagttctgctaccaaaatacaatgtcctagctacttttatttaaaactatttggtttctggttttgaatgtctggacaatctgaatgtaagaattgctcgtgtgatttctgttggtggagaggaagcgaggggagcttcatctgaatgagcgtgtcaattcttagtccattttctctctgacctttttaggtataagccggaggttggtgatatcatagttggccgtgttattgaggtactgacaattatgctttatggcaccctttggacattcttcttactgattttggtccatgaatatcattttagggataaaaacttcattttgctggatatgattatttagttaaaagttgctagaatttcttagtattttgacagtcctgataatatatgcataaattggagtaaggtagttttggtaaatctggtttaatattatagtcacatcttcacaaaatcagctactgctatctttattattatgtcagttcaacatccatgttatgcaaatctattaaaaaagataaataacctactgtcgtgatttttgtttctcaagattgcacctaaacgctggaggttggagataaattttagccaagatgctgttttgatgctttcttctatgaatttacccgatggaattcaggtacagttttctcatttttttgtaccttaaagcttataatatccaaagtttgtgggatgtcagatggctgaacacagctacatcttcctgttataccagtctggaaaataaatgatatggagtactacaacaaaggatatttcacgcattcagcattcgttgaagcaccttttctagtctccttagttatcttaaaacactgaattcattgaaagccattctgtttcacttagaagtttagcttttgcattgttgaaagatgaaagatgactattccatttaaaattttgaattatactttaatgaaaactattctatttcacttggagatataaagcatagaagcactgctcaagatcagcattgtatttgaataaaaacaccaactgaaccaattttcatgtaaatgaccaaagaaaatacaagtttgaagaaacatggtggcatgttacgtgctagtgcgtcagggtcaatgctgtctatccactagcgtcactctagctgggtgtccattgaatagatggcaccatataaacactatggccacatagaaatgattcattttactgttttggaaaattatacactatgatgacatcgttggaatgttgcttgacagtttacatattttgtcatgttcaaagaaacaaatgatggacactgttattttattacaaatttcattatttattttctcgtttttctctagtattctagttaatgcattttccctgtccccattgttagagaaggagaactgctgtcgatgaacttaatatgcggacaatttttgaagaaaatgatgttatctgtgtaagtattgtacttatcctttctctctgaaggtagaaggactaacttgtttggtgctggaatgggttttaattttgataggggttttgacttaggccacgcaatagatgtgcacttgagtatctgccattccgtagaaggtatgataatatgcctctcaatagacacacataatgatgatccgcgttctaccccttctagatcggcctggagggaagcatgcaaaccaaatggtgatagtggcaaatcatcaagtgtgcgtgtgcattgactattgggtagcagattatcagttactttctgttgagtggtaaatccacacctattgagtggcaaacagtctcaacctgctcatttaatgcacttaattcatcatctatcaaaaccattttttaccaactgtttatgctagtcgcctatgtatctatattttgattagcaccaaacatccatgaataatgcagcagttcaacttggcacatttttctgaacattttttttttctgtgaatgcattagttagttctggagaaatttcttccactcttaaggcattttgcttgcagattacaaaaggatgcctgaatcaagcattttgtattttgtttactattttttgtttgtgaggtcaaatttcaatgtcccatacttctttatctattattctagcctagggacttggtcatatttgaaatcgaatttcccatttatatttctacattttgtcatagatactaatttccattttggagcaccgtttaaatggtatgctgcttctttgcatggaattaattaccaggctgaagttcgtggtttccaacatgatggatctctgcacctacaagcacggagtcaaaagtatggaaaggtagattccagatcaaccactctgtcagctatcattgcccataccataataatcaagattatgttcttatgtgacctgtgtggttcggtaatccgcatgttgtcttaattatgaatatgctctatttaaatgtccacagtgttgctgtgtgtgcaaaaaaaaatgttccatatttatcttccagagcaataatgcaaaggaggtttataaatagttcagggacatgcaatgatgcaaaggagatttataactagttcaaggagacaaggacatttaataatgaataatgctaaggttcacagctagttcatgatgtgtgttaagtcttgacacctagttttccttaattttgataatgacgtttgttgttcagtagttcgtatgtgactgctttagttacacagttgtattttcaattcaaaagatgttacatttctacctaattcaacattagattgttactgtttctcgtctgatgttcttattttgcagcttgagaggggtcaactgcttgtagtacctgcatacttggtaaaacgacggaagcagcatttccaccacctcgagcaatatgatgttgacttgattcttggttgcaatggattcatctgggtaggtgagcatgttgtggtaggtgaaaacgctaatatgatggaaaataagctgaatttgagtgctgaagtggagaatttcactccactagaaacaaggaaacatatttgccggcttgccaatgctgtacgtgtgctttcagctctgggtttcactttgacagttgaactgataattgagactgctgaagcaagtgtatcatcaaatatcgagataaacaacatgcttggggctgaattttatgtccagacagcagagagagaggtaaaacgtcgagctgatctgttgcgaaagaaaagtggagcaagataaaatctgctgatcctatgtaaagatgcctaaacgtgtacaagaagaaagcctgataagtgccatcgtactctgccatagagatccaactgttttcagatctacggtgcttgcatttgatgatagtgctagaaatggcaaaatgctgggcttgcagtgctggaggggcctcatctatgttaaatcacataactattgatgtacgtttgacgcttttttttttgaattgtattactgcatactccctttcttgaaaattctagtaatctatatcctgagattttgatggtgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0520000, RefSeq:Os04g0520000