Os04g0531300

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Revision as of 11:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0531300| Description = Dihydrouridine synthase, DuS family protein| Version = NM_001059930.1 GI:115459589 GeneID:4336488| Length = 6085 bp|...")
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Gene Name

Os04g0531300

Description

Dihydrouridine synthase, DuS family protein

Version

NM_001059930.1 GI:115459589 GeneID:4336488

Length

6085 bp

Definition

Oryza sativa Japonica Group Os04g0531300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:26964152..26970236

Sequence Coding Region

26964220..26964264,26965057..26965162,26965581..26965719,26965953..26966061,26966146..26966282
,26966726..26966862,26967300..26967406,26967599..26967726,26968534..26968585

Expression

GEO Profiles:Os04g0531300

Genome Context

<gbrowseImage1> name=NC_008397:26964152..26970236 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:26964152..26970236 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagtaccgcgacaagctggtgctcgcgcccatggttcgcgtgggtaccctgccgtttaggctactggctgctgaatatggtgctgatatcacttacggagaagaaataatagatcataagtttttgaagtgtgaacgtgttacaaatgaatctcttggtactactgattttttggagagagggactgatactgtagtattccgtacttgcccacaagaaagggatagggttgtattccaaatgggaacatctgatgctgtgagggcactgaaagctgctcagcttgtgtgtaacgatgttgctgctatagatatcaacatgggttgtcccaaatctttctctcttagtggtggaatgggagccgcattactctccaaacctgagcttattcatgatattttgaccacattgcggaggaacttggacactaccgtgacatgtaaaatccgtcttctgaacacacgccaggacactgtggagttggctcgccgagttgagaagattggtgttccagcccttgctgtccatggaagaaaggtcaaagacagaccaagagatcctgctaagtgggatgagattgcagatgttgtgtctgcactgtcaattccagttatagctaatggagatgtatttgaatatgaggattttaaaagaattaaagatgctacaggtgccgcttctgtaatggttgccagaggtgccatgtggaatgcctcaattttttgtcccaaaggaaaaacaccttgggaggatgtcaaaagagagtacgtgagaaagagtattttgtgggacaatgatttgaagagcacaaaacaaaccataaaagaaatgataatgcactattcttgccttgaattccctgaaggaaaaggtgtgaacaagtgtgatacaatagctgatttagcgaaactatatggggaagagtactacaatttcgttctttcaaataggaattga</cdnaseq>

Protein Sequence

<aaseq>MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLK CERVTNESLGTTDFLERGTDTVVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVA AIDINMGCPKSFSLSGGMGAALLSKPELIHDILTTLRRNLDTTVTCKIRLLNTRQDTV ELARRVEKIGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFK RIKDATGAASVMVARGAMWNASIFCPKGKTPWEDVKREYVRKSILWDNDLKSTKQTIK EMIMHYSCLEFPEGKGVNKCDTIADLAKLYGEEYYNFVLSNRN</aaseq>

Gene Sequence

<dnaseqindica>69..113#906..1011#1430..1568#1802..1910#1995..2131#2575..2711#3149..3255#3448..3575#4383..4434#gcggagtcctctccaaacttcgcggggaaaaaaattcggagccgccgagcggcggcggcgcggcggggatggagtaccgcgacaagctggtgctcgcgcccatggttcgcgtggtaaacctctcctctcgatccggcccctcctccttctcccctaaaccgctgcagcatccactgggaggttgctctcgtcgaactctagcggcggcggcgtacgaggtgggagcgtaggaattaggatccgagttttagcccggggatctggatcctagatttaggcatcctcatagctagagctgcgagctctaggttttcgcgtgcgcccgcggagtggacgagcacgtctctgtgcgcccgcggcgggttgttccgtgggcgagggctgtgagcttttgggagcccgattgctcgagttatagttagaaattcaatttagaaatttaattagacttagttgtagttggaagcagcagtttcagctctccagagaactggagcctagtatttctgtcttgttgcatgtgtgagaaaccatgttgtatcaccatatacgcttcggttttatgctgaaagtgaacaaataatagtaataactaataagtagcatgcttctatgttcgtgatctgatttacctctttgcttgggtcttggatctgtgatgttttgatagtatctgaagtacaatttaaaggggcaaagcatagttttgttgaatgcagtatttttttcaaatctgaccatttctgctagcagcttactgtatcatttttagatagataacaataaattatcttgatgggattgctgaacacatagtatttatcctacacacctaatcaggaggtttcctcttaattgaaaggtgtatgaagtatatttccttattcttccaattacctttgcagggtaccctgccgtttaggctactggctgctgaatatggtgctgatatcacttacggagaagaaataatagatcataagtttttgaagtgtgaacgtgttacaaatggtattgtagttcaattggtgtttggcattttattatgatctcgcatgcaactgtattaacagttaagttcttctcagaaaatttgttaagcagttggcataatgttatcttttttgggatgacctgactcctataatattgcctttgaagtacatgattgaaaatgttcatcttaaaatcttaaattactattgatggtacatggttgttattgaagatcatgaaaaatatatgttttgataacaaatttagagttagatgcctttaagaagtaagcttcttgattttttcctatgaaattggggaacttttaacagttccatttatttgatctctattatctccactactgtctagatttgttctttctgtgtcgtataatccttccatgctaataaattttatcaatgctactcagaatctcttggtactactgattttttggagagagggactgatactgtagtattccgtacttgcccacaagaaagggatagggttgtattccaaatgggaacatctgatgctgtgagggcactgaaagctgctcagcttgtgtaagtcttatttctgaaaatatttacggttgaagttctgaagtaaaataatataggttccaatgagtggataaatccatatttcctttttccatgaaaaattcctaggtgcattgggttacttataccatggttgctgtttgaattgtttcaattaatcaaggaatcggatcaattgttttaaccgcccctgctttagatattttctttgatcacagtttcatccttaccaggtgtaacgatgttgctgctatagatatcaacatgggttgtcccaaatctttctctcttagtggtggaatgggagccgcattactctccaaacctgagcttattcatgatgtactcaaatttactgttttgttttattacttaaatattctagaaattcattcacttatcaagtatgcaaatcacatcatgtagattttgaccacattgcggaggaacttggacactaccgtgacatgtaaaatccgtcttctgaacacacgccaggacactgtggagttggctcgccgagttgagaagattggtgttccagcccttgctgtccatggaaggttagttacgcttcatacttttgagttctgatagaaaattgtactcatccactctactttataatgtgcaatttaccatctttctctctccaattgtccatttagttgaaatccctatgtttaagaatccaaggtgaaaatagtattgatattcacagctatttggcttgtttactatatttataggatccatcctaaatgatgctgctaaaatccatgaactgttcaaatgaatggttggcatttttccatgttcctttccgaaacacctgagccttcaattgactacatttgagatatattttataagttcttttttgcaaccattaaaatgaatatgctgcagaataatgtcatatatcaactctccattttcaatcttccctaatatgtctttttttgttaattgatttccctgatgttggattcctttacacatgcagaaaggtcaaagacagaccaagagatcctgctaagtgggatgagattgcagatgttgtgtctgcactgtcaattccagttatagctaatggagatgtatttgaatatgaggattttaaaagaattaaagatgctacaggtttgtatgctcagttaacatttctcaattttctttgtttagtaaagtagctgtctgttcagttttactataaatctataatttggcagagtatagcaaacagagggagatatagaaatgaatctaaaatttgtcccatttgtgtttcttcctttaccagttatcaatattgagcttacttttctactacccaaagcaatctatatgtactgcgagtgtttcctaaataccataggaaaccgaacatctgaaaaattcagtgactacaatattcatttatgagcaaccatgagtatcatagcatttcttggaaactagagattgttagcggttgtcagaattgctactgttgttacttggagagttcattgcattgccagatattattttttgtgtttctttttattggtttgtatcttgatttctgcaactgccaggtgccgcttctgtaatggttgccagaggtgccatgtggaatgcctcaattttttgtcccaaaggaaaaacaccttgggaggatgtcaaaagagagtacgtgagaaaggtatttgattgttcttcccacaccattcctatttcagtgtcaaagttttattatgttagcatctcctctctcagttgtcctatttttcatggggctaaaacaggtttctttgccctaacatctaaattaataataattttatgctttatttccttcattgacatcacattacattgtaattcttttccgcagagtattttgtgggacaatgatttgaagagcacaaaacaaaccataaaagaaatgataatgcactattcttgccttgaattccctgaaggaaaaggtgtgaacaagtgtgatacaatagctgatttagcgtaagtggaatccattttctgtttgttcccctttcataattatccatgactgctgtgttcagttgtttattgggcatcatatatagatattcttttcccgtctattctagatggtaggcaaacaaatctcttactgcatggatagtgctgtccaattttgttatcctagatcaggttgcatgtctatagtacattgcatgccaaatatcatcatttttttctagcctttccattcagcctgatccaaatttatttgatgttaactatcaatttatgtgaaccaagtagatagcaataacatatgggctgagttccttgatttgtacttcaaccttttcacatgtagcgcttttcatatgatttacacatgttaatgttaccaaatagactgtgaaatgttttaatatactctggatttatagtctattggtgttttgttgaacaatatcttgctaaacgtgctggaccaagtttgatataatggcagagccttagtgttggggctggccttgcacactgctgccagtgagcaaacaacagggcaacaccttttagaaaacagctagacttgcaaattgcaatggctactattggtaggctcaaatcatttttcaattagtggtggtttgaatgaatcaatatgagaggtctgcaagatcttaaaaaagagtaaatcatatcctggtgtttctccatgaaagcaccaaattctgcattggtggattttttctttcttttgcttgtttatattattaaattggcacatccttatttacagtagatcatagttttttcttgtattttcaggaaactatatggggaagagtactacaatttcgttctttcaaataggaattgaacaccttgattttttctaacatccatgttacacaggtatttatttcagctgcattgtactgcaatcatgcaagtagtgaaaaaaatgctttgtgttcatgcaattaattttttatgacatttggaagttcccagctgcaaaacacattaacttggatttcaaaaaactaaatttgtgttagaattgaaagtgcccattattccaactccataaaagttactcctacttaaatacctagtaaagtttgtcaataccttgttaggtatctctaggaaaagggcacattgcttgagtctgaactacatgatagtcgaatacccaaccaatgcccacttgtgttaggttgacatacctaccagagactccaagaattctagatggaaattgagactgtgttgtttggctgtcagccctgcgactgtaaaactactaactgagaaatgtctaacccaagaaacacaaataacaataattactgagatcaatggtgcaagtccaaattttgcagaactatcaatcgccaacttggcattgtggactgtgagtgacccacacttttgatgggacatctcttctttaaactaggagtgtatgacatttttatatccagattggtagctttcacttttgataggttgcctagtggcattcatcccttaaatcggtaacaattatttttgcattttcttgtcattgtctctgacttgaagcttttttgcagcccctgcctggaatccataccagttttatgaattggtttggaaggatctaccatattacgaaacaaatactttgcagttttgactgaacttgtactttgtgatctataatgaccaagttattgttatcgttgggtctggagcgccctacatttttgggaagttgttatgacagatgttgttgatgtaagagcactaaagagcttctctgaagcattttgggacatgtatttttggctggattgataatatatatttgatccatgccaggaactaagaacaccattgctttttgttgcttacatattatcactgctaattcagatgccaaggctggggcatgtattatttgttgaaacaatgtactttttattttaaaaaggttcaagtagtcagtagaccttatgatctattgattgtattactcggacgatatcccaaatgctttaattcgtcatggcaaattggcataccatttgattgttgagtatttgcttgccagtttcttgtatacttgttgacagtttgtgcatatgaactgttttactaattttggagaatgagacatttaatatttcagttcctttttaaaatctaaaactgtttttggactgacgttttcttctatttgtttgtgtacacaataggataatattctgtttggttgttggacatcacctatgggtggggcttcagtctcgatctctcaggttcttaaatcggggttctggaagcaccaagtgtccaagtctgcatcaccgttgacatcagaaattaaagccgattcacacgggtaattcttttgggttagcttattatatcaccatatctaagacaattgctgcagtagacaaattatggcgtggttgtcatcttgtacacttccagaaattcagtttcttgcaataagtaaggttattaaaggtcaaatg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0531300, RefSeq:Os04g0531300