Os04g0533000

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Revision as of 11:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0533000| Description = Similar to RNA helicase (Fragment)| Version = NM_001059943.1 GI:115459615 GeneID:4336501| Length = 6086 bp| Definit...")
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Gene Name

Os04g0533000

Description

Similar to RNA helicase (Fragment)

Version

NM_001059943.1 GI:115459615 GeneID:4336501

Length

6086 bp

Definition

Oryza sativa Japonica Group Os04g0533000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:27042656..27048741

Sequence Coding Region

27042793..27043079,27043842..27043902,27044714..27044948,27045074..27045312,27045609..27045860
,27045960..27046140,27046926..27047014,27047316..27047389,27047481..27047559

Expression

GEO Profiles:Os04g0533000

Genome Context

<gbrowseImage1> name=NC_008397:27042656..27048741 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:27042656..27048741 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatccgcgcgcgaggtaccctcccggcatcggcaacggccggggcgggaaccctaactactacggccgtggcccaccgccatcgcagcatcagcagcaccagcaccagcaccagcagccgccgcacccgcaccaccaccagtacgtgcagcggcagccgcagccgcagcaaacgccgcacaacagccagcatcagcagtggcttcggcggaaccagatcgccgccgaggccgcgggcgccagcgagcagaaggcgccgcctgtcgcggacggcatagattcgagttcacaagactggaaggcccaactgaagctcccaccgcaagatacacgctacaggacagaggatgttactgctaccaagggaaatgaatttgaagactattttctgaagcgagaactccttatggggatatatgagaaaggatttgaaagaccttctcctatacaagaagaaagtattcctattgcattaactggcagtgatattcttgcaagagcaaaaaatggaactggcaagactgctgcattttgtatacccgcgctggaaaagattgatcaagacaaaaatgctattcaagttgttatattggttcccacaagggaattggctctacaaacatcacaagtttgcaaggagcttgggaaacatttgaagattcaagtgatggtcactactggaggaaccagcctaaaggatgatattgtccgtctttatcaacctgttcatttacttgttggaactcctggtcgcattttagaccttacaaagaaaggtgtctgcgtcctgaagaactgttcaatgcttgttatggatgaggcagacaagcttctttctcctgagttccaaccgtctattcaggaattgattcggtatcttccatcgaatcggcaaattttgatgttctctgcaacattccctgtgactgtcaaggagttcaaggacaaatatctccctaaaccctatgtcattaaccttatggatgaacttacattgaagggaattacacagttttatgcttttgttgaagagaggcagaaagtccactgtcttaatactcttttttccaagctgcaaattaatcaatcgataatattctgtaactcggtaaatcgtgttgaactattggcaaagaagatcacagagcttggttattcttgcttctatatccatgctaaaatgttgcaagaccatcggaacagggttttccatgattttcgcaatggtgcatgcaggaacttggtttgtacagatctttttacaaggggaatagatatccaagctgttaatgttgttatcaattttgatttccccaagagcgcagaaacatatctccatagggttggtagatctggcagattcggccaccttggtttggctgtgaatttgatcacctatgaggaccgttttaacttgtatcgcattgaacaagagcttggaaccgagataaaaccaataccacctcagatagaccgagcaatatattgccaatag</cdnaseq>

Protein Sequence

<aaseq>MDPRARYPPGIGNGRGGNPNYYGRGPPPSQHQQHQHQHQQPPHP HHHQYVQRQPQPQQTPHNSQHQQWLRRNQIAAEAAGASEQKAPPVADGIDSSSQDWKA QLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALT GSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKH LKIQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEAD KLLSPEFQPSIQELIRYLPSNRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLK GITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIH AKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVG RSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDRAIYCQ</aaseq>

Gene Sequence

<dnaseqindica>138..424#1187..1247#2059..2293#2419..2657#2954..3205#3305..3485#4271..4359#4661..4734#4826..4904#cccacccacgaactcacgaggagggaaatgctcccctaaaaatcccccaattggagcgaagcaccgccttgatcccttcctcccagccaagcctgcggccggatctgagctccgccgcgccgcgcgccctcgtagcgatggatccgcgcgcgaggtaccctcccggcatcggcaacggccggggcgggaaccctaactactacggccgtggcccaccgccatcgcagcatcagcagcaccagcaccagcaccagcagccgccgcacccgcaccaccaccagtacgtgcagcggcagccgcagccgcagcaaacgccgcacaacagccagcatcagcagtggcttcggcggaaccagatcgccgccgaggccgcgggcgccagcgagcagaaggcgccgcctgtcgcggacggcatagattcgaggtgagggagacgcttggaaggcttcccgtttggtattgttagattaaggctcggtattcacgcgattggtggacttatttttggattttgttctgctgtgaggggtgaagcctacacttgtcgatcaataggtatctaggcgaagttgcaaaaaattgaagaaaaatttgtgctccttaggcgatgcgctgcgacctgcgagcgtatgtgtttttagacggacaaaagtggtgttatataggggaattagagtgtaaaggtctacttttctggtcagcatgcttggatcacacctcctccgtctgagcgtgctgtattaattcaaaataatcaaaacgtcgtagacttttgcaaagtaatccagaaattggttggagtgaactaatgctgtcaagcagtcaagcagacagtttcctgatgactgctgagcaacttagtccgtaccgtgcattgtgtacattatggatgactagcaaaatacccgtaagttgcagcgggctctcatgaagcaaatagagcttctcactctagtacattgttagacaacaatgatgagcccacaagatagatggtggcccccagttgtcagatagatgggggtggcagaaccaccaccaccactagcatcttctaagatagtatagatatatgtagctgctggtgttaaactagaaaaatactatggatactttaattcctcttcatccgtatatgattaacatcatgaataaagtaaaaagaaataagttcaaccttgtgcagttcacaagactggaaggcccaactgaagctcccaccgcaagatacacgctacaggacagaggtactatagaacaatattttccttttgtcatattagtgctgggtgctaatgattgtaatgagctagcaaatatgttaacaagttgacataattgtcaccctcgcattctatcagtgtgggtgttttgtgtttcctaatttcctacatgaggttttgatgcggtaaataaattaatagaatcgccattttaattttagaagcttccaggcctagttctgataatatatcttttcatgctcatctcttgtacctcatcttagttacaaatagccaaatttcaatatttcacaggactatctgaatgctttgatatgggtaaaagaaaatatattgtaatataaatataacatattttccatacaacgtgttacctgtctttctaccatagggaatattcaccttaatttgattttatatgtggctatccatttatatttgacttttattaagaagtttacaggggctaatttgcaatatttataatgagagtaagtggggaggcagattcactgccaccaccaccaccttcttttgaaggagtatagattacatattccattctgttcccagagaaaaatgctatgctggtattgcattgaacagattatatgactgttggtacacattacaccataggtaggttatgtgttgattgtgccaacattaagatattcagaatattaaactagttattaaatgaacccctggataagttaaatgttgtacttagtttatggtgtccctgttgcgtttgtttgttgcacatgttctcaatcttctgctaagctagtgtcattgaaaaaatgtgtaggatgttactgctaccaagggaaatgaatttgaagactattttctgaagcgagaactccttatggggatatatgagaaaggatttgaaagaccttctcctatacaagaagaaagtattcctattgcattaactggcagtgatattcttgcaagagcaaaaaatggaactggcaagactgctgcattttgtatacccgcgctggaaaagattgatcaagacaaaaatgctattcaaggtttttttctagactagcacctgttttgccctacatggagttcctaaattgtgtggtgatcaaaggaaaacactttcatgatttcatcatctctgatcctttattgaatctcttcttatattcagttgttatattggttcccacaagggaattggctctacaaacatcacaagtttgcaaggagcttgggaaacatttgaagattcaagtgatggtcactactggaggaaccagcctaaaggatgatattgtccgtctttatcaacctgttcatttacttgttggaactcctggtcgcattttagaccttacaaagaaaggtgtctgcgtcctgaagaactgttcaatgcttgttatggatgaggtatatcattgtctgtcttgttttcatgtgttgttgctcctgttcttaagtaagatactctaatatcttttctaagtggcatctgaacataaaacaatagttaagcttttttctacttcgattatgtgtttgtataaaattcgacacgagcaactttgatgtttggacgagaacattaataatgggtatgctacaaaaggagaactttaaaaaatatgtttgaatttgtagtgtgttggtagatttgtagacaaaaaggcatgagtgcttgtgagtaatattgccttctcttgcaggcagacaagcttctttctcctgagttccaaccgtctattcaggaattgattcggtatcttccatcgaatcggcaaattttgatgttctctgcaacattccctgtgactgtcaaggagttcaaggacaaatatctccctaaaccctatgtcattaaccttatggatgaacttacattgaagggaattacacagttttatgcttttgttgaagagaggcagaaagtccactgtcttaatactcttttttccaaggttttcccaatagcccttactaactgagcttttaaccatgatttcattttgatgtcatcataatctttagttaatacatccaatttcgtttcaatacagctgcaaattaatcaatcgataatattctgtaactcggtaaatcgtgttgaactattggcaaagaagatcacagagcttggttattcttgcttctatatccatgctaaaatgttgcaagaccatcggaacagggttttccatgattttcgcaatggtgcatgcaggaacttggtttgtacaggtatatagatttccttctaatagttaactgttcttttttccctattaaagaacattattccatatctatcttactatcggttccacactgagtctttaatattctgtattcaaggctttgtttttttttaaaaaaaattactattaaggattttaggcttttgacaccttgcttaatttcatcttccaaatcaaagaaagaaaagctccaggaaatgtatctaaatacattatcgctttactaaatctctactcattttacaagaaagttagaaatatataaaatgccctatttgattcctattatatatagtttatgccaaaaagttgatgaattcagttagtgtttgcttttgaacatgttttagatatgcaacctgtatgcccctgttgtttgttaaatactttaagaattactttaccaagtatgaggtatgtccaaaagtgtgagaaaatccaacatatagattcccattataagtttaattagccaatattatctctctttggcattagggacatttaaaggtcaaccatgagagaggttgttacaatgttatgttagagcttggccacacttttgtaatttgttccatggctatctaattttgtgctgatattccattcattgtaaagttatgcttttggtgtttttcttatcttgcctgctagaaattagcatgataaaaatgccttgctgccaagtgccaaccaaagctcttattgttatattcagcaaactggaggcatcatttgggttctaatatctcatatttccctttgcagatctttttacaaggggaatagatatccaagctgttaatgttgttatcaattttgatttccccaagagcgcagaaacatatctccatagggtatgcattgaaagaactgagatttttttataatttctgttatagtggcctgccgaatatcttctcctaagatggctttttttatgacatggacatttaagattgaatgcttatccttgctgctattttacttctttgtttgaccattctaaatgcctatggcaaatattattgtacttcctctgtttcaggatataagacgttttgactttagtcaaagtcaaaacgtcttataacctaagacggaaggagtaacattttgtttttttgcttacagtttcactgacactttcctttgtaggttggtagatctggcagattcggccaccttggtttggctgtgaatttgatcacctatgaggaccgttttaacttgtatgtaattcagatcatcagtgctatagctcctttctgtatcctgtttagctgattaacatttttttgaggtgtgtgtatgcgcgtgcaggtatcgcattgaacaagagcttggaaccgagataaaaccaataccacctcagatagaccgagcaatatattgccaatagttatctgacagaacgatcttgtatgccaatctctggaagtaataagataacctgtgtaaatatcagctcatcaggtacctacaccaatcattctgcatgtagtggatctacaatcctctgttaaatgccgcttcattatttttctctgtagaaaagtcttctgttcatcatcattgaatttcatgcaaatcaaggaccttcatgtcgtccgaaagttcatggagaactggttttggggcctgtaacattagctgaaaatgtcttcacatgcagacatttgtattgaggatctcagggtttgtcgtacagggctcgttatcctgcatctttagggtataaaaccagtaatgccattacaagaacaatataacttatgttggtactcgataaaatatctctttactgttgttgaaagcctctgaccagccagggtacaggcccagatttcccctgaatagttctcatgcgttgtacaggagtgctttctagagttgtattttgtgacatccttgttttcagttaaccctgaaggtagattaacgtgatattagctggcactcaatttaccatgacctcgcatgcatgttcatattcatcatgctcaatttatcattatattctctacgttagatctattcactacgattcatttgtgtaatgtgctcgactcaaatctatttaatgatgcaggtgtcatttcatgatctcacatggtgtatcttaatcaaagttgtgtaggggcactcagtagcaagtgactttgtaacaagctcatctaaatgctgtggcttagccgtgaagctcttgatcagacaatattgaatgttgctgataaggtctgaccccaggttgtttgccctaatctcttatgacctgttgtcatccgacattgtatcagctagcttgttttacaggactttttaaccctggtaccttcttctgtctgtgttgtggcctcgctgcacacggatggtttattccacctgagcgatgctgtcaccgtgtgtcggtagtgaatcagcatcatggtctcaatgtttcatggatactttcagcatttcactttccagtattttgtactattttcatgcgttttgattgaatgatcattttgtaatgtattgtttgactgggttggtgtactaggagtatttgtggatcggagatgttatgttctcttct</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0533000, RefSeq:Os04g0533000