Os04g0544500

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Revision as of 11:21, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0544500| Description = Similar to Similarities with spP40209 Saccharomyces cerevisiae YMR136w GAT2| Version = NM_001059996.1 GI:115459721 Ge...")
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Gene Name

Os04g0544500

Description

Similar to Similarities with spP40209 Saccharomyces cerevisiae YMR136w GAT2

Version

NM_001059996.1 GI:115459721 GeneID:4336558

Length

4115 bp

Definition

Oryza sativa Japonica Group Os04g0544500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:27658910..27663024

Sequence Coding Region

27659257..27659606,27659765..27659876,27660009..27660081,27660191..27660611,27661268..27661624
,27662611..27662650

Expression

GEO Profiles:Os04g0544500

Genome Context

<gbrowseImage1> name=NC_008397:27658910..27663024 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:27658910..27663024 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggaaagcaaggaccttgccgtcattgcggagtcaccagtactcctctctggagaaatgggccaccagataagccagtgctctgcaatgcatgtggctcaagatggagaactaagggttcgctgacgaattacacaccaatgcatgctcgggatgatattgatgctgaggaacctagagctagcaagctgaaacctccaacattgaagctgaaggaacagaagcaactgaagaaaaatccaagccacatcacaatggagaatggaccattttctgatcaaaacttccgtaagatgggagatcctgacctaagtaatcgatctggttctggatcagcactatcatactcagagagttgtgccccctatggcactgctgatgcaagtgaaatgactgcttcagcacaatcacatgcttgggaatcacttgtgccatcaaagagaaggagttgtgtcactcggcctaagccttcacaaatggaaaaacttgcaaaggatcttaattccataatgcatgaagagcagctactttacctttcaggatcctcagaggaggatctaatttaccatagtgcaactcctgtggattcctttgagatgggatatggaagtatgcttctcagaccaaattcaaaatcactggaggaagaatcagaagcaagctctattcctgctgataataagtcatatattactagtgaatcttactcagggtcggtctcatttgtatatagtgaaagcaaggcaacaagcaaccaaaatgttataactgaacagccaaagaagtttctggtgcaaacatcagataatgctagaagggctaatctccatactgaaaatcaggatactctggagaatgcaaactcacctttagtttccctacatatggagggaaaagacagtgaagaaacaagagtaaagaccagtgcttcaaatcgccttacaaagtccaccatgaatcctctgaaaaggcctcatgacacccacttccaaagctccgtagaactaagaggaaccatgaggagtcctaaaagagtttctaaatatggtgatgctatgggtctaaagtgccaagcgtcgtttatgccgaaaccaggcaatggcaaagatttagcctgcagtgacagagcacttaacttattcatgttacccccggataaactatccatgctggttcctcctcagtatgccaacactgattctgatcaagacctgttgctggatgttcctcttaatgctcggcacccagaggccgagcttctttgccagccatctcaactgagctcagtagcccacagctccacctcagaggctgggaatgccggaggagaggggcgccttaagcagccctag</cdnaseq>

Protein Sequence

<aaseq>MGKQGPCRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLTN YTPMHARDDIDAEEPRASKLKPPTLKLKEQKQLKKNPSHITMENGPFSDQNFRKMGDP DLSNRSGSGSALSYSESCAPYGTADASEMTASAQSHAWESLVPSKRRSCVTRPKPSQM EKLAKDLNSIMHEEQLLYLSGSSEEDLIYHSATPVDSFEMGYGSMLLRPNSKSLEEES EASSIPADNKSYITSESYSGSVSFVYSESKATSNQNVITEQPKKFLVQTSDNARRANL HTENQDTLENANSPLVSLHMEGKDSEETRVKTSASNRLTKSTMNPLKRPHDTHFQSSV ELRGTMRSPKRVSKYGDAMGLKCQASFMPKPGNGKDLACSDRALNLFMLPPDKLSMLV PPQYANTDSDQDLLLDVPLNARHPEAELLCQPSQLSSVAHSSTSEAGNAGGEGRLKQP </aaseq>

Gene Sequence

<dnaseqindica>3419..3768#3149..3260#2944..3016#2414..2834#1401..1757#375..414#gcattccttcctccattatttctccatccctttcccctctcctcctctcctctaccttctctctaaaagactggatacagaacaaaaaaaagggaaaaaacagaaagaaaggaaagaaagaagaacacctaccaagcaagtcttggtctttgagttcatgggctgtggaattgttcccaggaatcccctctggctctgaaaagattcacaccgagcaacagttctttgatttttttccccctttgttttgctgaagaattgcttgtacagaactgcttctttcctgtttccgcttggttttccggtgtttattttgttggaattttcttgggccctttcttcttcgcttgtggaggcgaggggagaagagaggcatgggaaagcaaggaccttgccgtcattgcggagtcaccagtgagctctttttttctttctttcataaagttagatttttccttctgcagttctttgtttccttgttttagttctgattccccctagctagtttattttttaggtgatgttttctcccaattatgcatctgggaagagtcttagataaaatcgcaaaaatcttcagaatccgtcgggctgggattcctaatcctttttccctgtggttccctctgtttgttctctgatgattattagctgaaattcattgaaccatcagaagctgtcaggagaactttgtggatatggttgaggtctcggtgtcctttgggtgtaaaattctggacaccaggaacagattatttgattcagatagacacatctagacttgtttgaccatggcagatgtatgctgttagataatttgacagataatgcaataagatgcagttaacagtctattgttcaagataaaaagaaccacctgcttttgccaatcagacattcagagtttcatagaagctgcaactgcagaaatgcttgctgttaggacagtactaaagtgaagatctttgctgtgctgtctagtttgcacaggctgggtcttctctttgcttaaatctcagcagcattataagttctggagttcttagctcttcctagaacagctgcttaattgaaatgatcatctgcatttagtatgcctcaccttttagattagcaaatgaacaactacatggttgtgctaaatattaaaaataacgtctgaaagatgcaatttgagtatgtatgtgactaatcagtaatcactcactgtcactgacaaattattcttctaagttcccttccctgatgccatcctatcctgtagcttcacaagcatgattcttctaaatttgtgataagaattccttatggacactctactaataaactctatacttgtataccacacatattactgcaaatcaattttgtactgttacttatgggaaatgatggaacaggtactcctctctggagaaatgggccaccagataagccagtgctctgcaatgcatgtggctcaagatggagaactaagggttcgctgacgaattacacaccaatgcatgctcgggatgatattgatgctgaggaacctagagctagcaagctgaaacctccaacattgaagctgaaggaacagaagcaactgaagaaaaatccaagccacatcacaatggagaatggaccattttctgatcaaaacttccgtaagatgggagatcctgacctaagtaatcgatctggttctggatcagcactatcatactcagagagttgtgccccctatggcactgctgatgcaagtgaaatgactggtgagtgatctccaattccctggtgtgtttctgttaaaacattttttgttctttccattcttgatgtgtaccatatagtatatgatttggttcagttcaaacaaataatgtttaaggaattgaacttgagctttgagattgatgtcagaagtacattgcttaacatttgtctccaatgtaatgctcatgcagtgctaccctcttataatgcatatgtgattttttcttttcgttggacacaataaagctatcggaaccttttttttggcaacccctcttcagtgttggtttattctttagtccagcattatcaattcataataacttatgctgattgttatatcattaagaaatttgtccatgcattgtgttcagatagcatcaagcctataatatggtgaaaatcatgctttagtaaagaccagtaatccagtacatatgaaacatcattaataatatatgtgtttctatactacatgttagtatgatgaagcacaataaaggccctcagaaaagggatattactccaccaaccataagcattagtttccattctcgaggttccgtatgtaactaaagaattgttttttagctgttctcttacaactttgtttgatatattaataattttattatctgatatcttgccaattcagcttcagcacaatcacatgcttgggaatcacttgtgccatcaaagagaaggagttgtgtcactcggcctaagccttcacaaatggaaaaacttgcaaaggatcttaattccataatgcatgaagagcagctactttacctttcaggatcctcagaggaggatctaatttaccatagtgcaactcctgtggattcctttgagatgggatatggaagtatgcttctcagaccaaattcaaaatcactggaggaagaatcagaagcaagctctattcctgctgataataagtcatatattactagtgaatcttactcagggtcggtctcatttgtatatagtgaaagcaaggcaacaagcaaccaaaatgttataactgaacagccaaagaagtttctggtgcaaacatcagataatgctagaaggtattttacatccttattagcacggaagtttatattgagtattagtttatattgagaattgttgtggaccaatctaaggaagtttttgtttgggatgtctattttggagggctaatctccatactgaaaatcaggatactctggagaatgcaaactcacctttagtttccctacatatggaggtatccagcttatgtatctttttcttgctcagttcaattatcgttatatgtatttttagaacatgtctaacctgaatatatgatcttcaaaaccttggttgcacattttgatagttgtttccctttgtacagggaaaagacagtgaagaaacaagagtaaagaccagtgcttcaaatcgccttacaaagtccaccatgaatcctctgaaaaggcctcatgacacccacttccaaagctccgtaggtcagcagcttctgacctgcatatactgttacttatatttggaaaaaaaaccaatcctatatattcatttcctatttcgtccttagcttaatgtaagtgaaatggagaaaccttctaactttattatttttatctattctttctttttgtgcatacagaactaagaggaaccatgaggagtcctaaaagagtttctaaatatggtgatgctatgggtctaaagtgccaagcgtcgtttatgccgaaaccaggcaatggcaaagatttagcctgcagtgacagagcacttaacttattcatgttacccccggataaactatccatgctggttcctcctcagtatgccaacactgattctgatcaagacctgttgctggatgttcctcttaatgctcggcacccagaggccgagcttctttgccagccatctcaactgagctcagtagcccacagctccacctcagaggctgggaatgccggaggagaggggcgccttaagcagccctagttccagttccagttaacaagcaacttaggaacaggaagtagctgtagtttactttagtttccctggatcatggttccctttatttaccggccactgatggggcgttctgcggtttgttcatgctcttatcgtcgtcgccctggtttactaggcaatgtgcgtctgccaagttggcaaaaattgtgtgttcagctaacacttctagctgtgcttttggagtagacttgtgcttgtttgtagcatatggcttttggagaaggtatataactcaacatggctgtatggaaaagaggtaatctccttatgggtaaaatgaaaaaggaaagaaagatggaagttattaggag</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0544500, RefSeq:Os04g0544500