Os04g0545000

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Revision as of 11:21, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0545000| Description = Similar to WRKY transcription factor 34| Version = NM_001059999.1 GI:115459727 GeneID:4336561| Length = 6708 bp| De...")
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Gene Name

Os04g0545000

Description

Similar to WRKY transcription factor 34

Version

NM_001059999.1 GI:115459727 GeneID:4336561

Length

6708 bp

Definition

Oryza sativa Japonica Group Os04g0545000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:27682822..27689529

Sequence Coding Region

27683055..27683238,27688549..27688704,27688818..27688903,27689001..27689327

Expression

GEO Profiles:Os04g0545000

Genome Context

<gbrowseImage1> name=NC_008397:27682822..27689529 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:27682822..27689529 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtatgcgtgcatggaagggagccagttggagacggcttgcctccctgccgcgctctacgcgccgctctgcccgtacacgccgccttcccctccttcctttcttgcgccattgccgagcctgcagcacaagcttccccagctgccgcagctggtccacgaccacgccgccgccaccgggacgaaccatggcgtgatgttctcgtcggaccatggctgcctgtacccgctgctcccggggatcccgttctgcctcgactccggctgcggcgccgccgcctgcgacgacgacaagcccgccggtttcgcgcacttgggctccgccgaggcggacacatcggcggcggcggcgagagtggatagcgagattgctgcagctgccaccgcaaccacttgccatgggcctaattcatggtggaaggggacggagaaggggaagatgaaggtgaggaggaagatgagggagccgaggttctgcttccagaccaggagcgatgtggatgtgctggacgacggctacaagtggaggaagtatggccagaaggttgtcaagaacagcctccacccaaggagctactacaggtgcacccacaacaactgccgcgtgaagaagcgggtggagcggctgtcggaggattgccgcatggtgatcaccacctacgagggccgccacacccacaccccctgcagcgacgacgccaccaccggcgccgccggcgaccacaccgccagctgcgccttcacctccttctga</cdnaseq>

Protein Sequence

<aaseq>MYACMEGSQLETACLPAALYAPLCPYTPPSPPSFLAPLPSLQHK LPQLPQLVHDHAAATGTNHGVMFSSDHGCLYPLLPGIPFCLDSGCGAAACDDDKPAGF AHLGSAEADTSAAAARVDSEIAAAATATTCHGPNSWWKGTEKGKMKVRRKMREPRFCF QTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVIT TYEGRHTHTPCSDDATTGAAGDHTASCAFTSF</aaseq>

Gene Sequence

<dnaseqindica>6292..6475#826..981#627..712#203..529#tctctgtctctctttcttctagctctctctctctctctctctctctcatggtcatcgcttcccttttaacctaaagaaagagatctttcttggcatctcgatcgtcttcgatctctctctagctagctatacctcaccggcaatccaagctgcatgatctcttgtagagcatactactagtagctagttaattagttgctgcatgtatgcgtgcatggaagggagccagttggagacggcttgcctccctgccgcgctctacgcgccgctctgcccgtacacgccgccttcccctccttcctttcttgcgccattgccgagcctgcagcacaagcttccccagctgccgcagctggtccacgaccacgccgccgccaccgggacgaaccatggcgtgatgttctcgtcggaccatggctgcctgtacccgctgctcccggggatcccgttctgcctcgactccggctgcggcgccgccgcctgcgacgacgacaagcccgccggtttcgcgcacttgggctccgccgaggtgatcaattagccttcaatcgatctcaatttggtcatggtatgccgttctttaattacttgttgcttacaatcttggatctcgatcgatcgatcaggcggacacatcggcggcggcggcgagagtggatagcgagattgctgcagctgccaccgcaaccacttgccatgggcctaattcatggtgagtacgatgatcgatcacctcgtcctagctaacaccttgaattgaggttgtagcctcctgttgattagggtttgatgaggtaataataggccagattgactgatgggcaggtggaaggggacggagaaggggaagatgaaggtgaggaggaagatgagggagccgaggttctgcttccagaccaggagcgatgtggatgtgctggacgacggctacaagtggaggaagtatggccagaaggttgtcaagaacagcctccacccaaggtatatatatacacgaaacataatacataaattgagagatatgcaacccctagaggttcttccacagctgctaatataattaacagaagtctaccatagctgcctccatagctaatatgctcgaaacaagatcagcgggatcagaatcgatccattgcctatctttttttcccggttacatggaagatgcataccagtgcacaccgttaaatatgtacaccaccacactcacacactcgcgaatgcggcccctaacacaagatcgaagagagggagaacagcgacaattcctattttaagtattaatttgcctatcttgaatcacatatatattatatagtttatctggggtgaggtttaactagttttgtggcaatatggttgtgcaactatagttgaattacatgcttcacaatagctataatattaaatggagaattgcttctttgttaatctttatagatcaaataaaagagctttcacaaatctaataacttgattacatgagtgcgaattcaccctttaaaagaagaaagagtgaatgcagatttttgtagattagttgacgactaattaaggatcagtttgcacctagcctactcttgctatgatgttacatgtgtgtatgtgtgtgtacactgcagattcctacaggaattatgcaagagaaatgtccaaatgcactagaggaaccataaaggaatatttttttaatagatgaaaagggggaaaacaattttaataacttaagtggatatccacccatctgtttcatgttaactaaatgaatataaaaattttcaaaaaaaaattgacatgatagattgatatatgtaatatgtcactccaccaacatgcaagtttaaattcaacttctacaagttataataaaaatgacatatttaactctaattattagacgtatattcatggtttgatttgttatttttgttataacttgtagaaattgaatttaaactttcatgttcgtagagtgatatattttatattaatctattttatcaatttttttcataattatttatttaacatgcaataaacggatggacatccacctgagtgattagaatccatctcaaaaaaagaggggggagggagagagagagagagagagagtgggaatgcatataaattttgaaaacgaggatcttgagctcaactcctttggttcttttttttttccaaataattccaaacatgatgtttgagttcatgtttagaacactagaaaaatgaagaaaaggaaagatttcataggaatctctccaaccattcctacaatctaatgatggtgaggattcggtacttttcccacatattgtcgaaactagaattcggcaatataaagggatagcgcacgagacctaacagtgaatggatgcggagacaagaatttggataggttcaggccctctcgataaaaggtaccctactcctattttaggattttacccgctatgtgtagtattaatctgatgatctggtgtgaatccctgtgttcatgccccttggagaaggcagggctctctgcccgccttatataggttggggggccagggttacaaagaagaaacctagccagacacggcatcagtttcctaatctattacataatatatggatgtggcccacctcctatctctagtagaatatggaggccgtgtgggtacccggtaggccggtacccatattctccacacatattttccgcaaaatttcttcattcaaaacacaacatgataatagagggttcgtggatagatgatggtacggtgctggaatattgcttagggatatatatgctggcattgcatctacacagaaattttttagaggaaaaagaaccggtctgtagttatagaaattgtccaccttaatttgtgacacatcgatcatcttatgctttgaatagtatcgataaaacatcaaatagatatatgtttaattgttcagaagtaaacggtcgatttaatttgccatgcatatatctttggagtattatatgttttacacaacagttttggactgaattgcatgcatgtaagctgatctgattaacaaacacgcgcccatttctggcacatttgatttggactagaagatggaaggcatccttataatgacaaagaaccagaaaatattccaaaatttaactacccatttaatttattgggacttattttacagtaattagtcgtgccaagtgaatctagctaacatttgtatactatatatggcatccattaattcttgttgacaagaagcctgaactttatgcatcatgttgcatttgttgaccgaagataagtaacgagtagtttatggtattgaaaatatgggaacactacaaaatacggtctcttcaggaaaaaaaattcctaagtgtaatacgtcgatatatcatagatatcagtgaaatcagagacggatccaaaacaagatttaaggggggactcatttccttattacttcttcaatcctcctatttttcattttctccctatttttctcctttcatcttcccttttatcaacgatgatccagtggggcagaagggacttaagtccccccactacccacaatggatccacccctgtcagtgatcgaaactccatgtggccattctcaaagttcatatttgcatatgtcatgtgtgtttcatatatacactataagcatcagcatgagctggtgaactttgctgaaagagtataccatgcaataataatgcaccatgcatgccacagtatgatgcatatatttctactaaagaaaaaaaaacgagatatctagagcatcgaatccctatgctaattattagtatccctgaacacctgagtttaaccctatgttttggcacgggtacctaccgaaccagagactgccacctgattcagaaaagccgattttgaaaagaaaaaaaaaataaagccgctactattctcttttctgcttggtctaagttctgatcatgcgtcatctttatggcactagtaaaacctatcatgatttttgatctgcagcgctaggacaggcgcttgcacatccacctgtgtgcatatggatgcaccgggacaaatggtgcacacattttcagattgcaatatttttcttcagagatacttagtacccgtaagaaggggaagcccctgttagcagcttgtgcatgatttcttcctgtagtatatctctgcaatcctatggttttaggtatagtttgagtgataaaattgatatgcaagcaagcacataagtccaacgaaaacagcgtatattcagtgaaaactcatagtaattgaatagcagagctcctgcgtcacgttcaaacataaaaatgaaaactaacagtctaaaataccactccctccgtttattaataacggatacattcatatcatgttcaaagtttgaacaataataatttctatattattatgtttatacatcaaaagtcatattattagatttattaccgctaccattcaaaaaagaccacattttagcccatctcgtttgtcctacaaagacttcattttggagcaataaatgcatcggagtttgctaaagtacgggataaatacattgtagttttctaaggtgaaggatattctagcattttttattgtattggtatgtgcctaaggaattggcattttttcgggtcattttgaaaaacatttgtcctagggggataacactggaacgagatctagcccgattcgaggacaccctcgaagggaaagcaagcactttcgaaagcaggggttatggactaaacatagagtttttttgggatggggaaatagtatcatattttcataatagttgaacaaagtcatcgatgatatttattttcgggaaaatatttattttcgcagacacctaggtgcagacgggcaagacctccgcacgaaaaaatcctttttatagtagtgatcctagcaaaaaaaaaagagggggggggggggggtcaaagtatgcatgtcttggtcaaaactgtgagttacaccattcatgtctgtaattcgatggttgaggtggggcaaggcgcgggatgtgggtgttcgggttaaacagagccactatagcattattttttgctaggatgaccgaaggatttggcccccacacattagtaatggtgtaactaaaatgtcatcgtttaggagagaatgcgctactcctgcatggtagtaggaacttttatgatgttaaggcaagagaaagtagagaggaaaaaaaaaattgtttgttgattaccagacggcctgattaatagaaaactttatactatttacacatttcatatatgctatctatagaactaaagtatttcttatactactgtatgagttattaatttgtatatcgtctaagatataacatgaaaaaattatatagacaatagttcatgcccttagaagttataactctccatgtttcctagctatgaattgctctaggcgaaaacaatatttcctagtaaataaattgcaaggattttgattttatctatagcagttcacagtacttattaagagatatatggggagttctgttgtgagaattggtgccggtgtgcttgacttctagtctagtttcttttggatttacatgccctaagggtcttattagccccattttctcaatgtacaaatgatgcatgcatcctctctttcaggaaatggtggagctcttattagcctcattttctgaaagagaggatgcatgcagtatttgtccttccatatatttgagtattgagcccaaatttgagctcattattagctattataccccgtatgaaacttaattagtattcagatgtatgcatgatcagttacgagtcggtgatcatgacatgcggaaattgcgtacacattaaatgtttttcttatttgtgtaacacaatttttttctaataatatattagcaaaaaaagggttcatgtcaattaaaattgtctccccccttttttttttgtttataattaaccttgcccatttcatcgtacaatattcatgatgaactcttgctgagtacgtgacagcactagtagtgctcatcagtttgagcatgcaggcatgtcaccaggccagtagtgccatttcagatcagctagcagcatccgctgctgacgctcttcttcatttgtttgtgattgcagtttctctgtagcatgcatacaatgaatcgctctctctctcagcttgctgaccagtccgtacttaatctgtgttggtgtgcgcgtgtgtactgtttgtgtgcaaattgtgcatgcaaatgcaggagctactacaggtgcacccacaacaactgccgcgtgaagaagcgggtggagcggctgtcggaggattgccgcatggtgatcaccacctacgagggccgccacacccacaccccctgcagcgacgacgccaccaccggcgccgccggcgaccacaccgccagctgcgccttcacctccttctgacgaacgcatgcttatgtacatggatcggtgatggattattgttctctgatctgatggtggcaattgggaaatcgaagaagcagggatcgatgtaaaatgaaaatgtactaggaaagcttttagaactcttatggatgctatttaatttcctggtcaatcagctagccgatcgatcaacacgttgcatgatattcagtctaattatgaatgaaaatgtagtaggaagcttaatt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0545000, RefSeq:Os04g0545000