Os04g0545200

From RiceWiki
Revision as of 11:21, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0545200| Description = Plastocyanin-like domain containing protein| Version = NM_001060001.1 GI:115459731 GeneID:4336563| Length = 4565 bp|...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0545200

Description

Plastocyanin-like domain containing protein

Version

NM_001060001.1 GI:115459731 GeneID:4336563

Length

4565 bp

Definition

Oryza sativa Japonica Group Os04g0545200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:27717391..27721955

Sequence Coding Region

27717391..27717829,27718837..27718976,27719692..27719784,27720734..27721132,27721378..27721512
,27721602..27721955

Expression

GEO Profiles:Os04g0545200

Genome Context

<gbrowseImage1> name=NC_008397:27717391..27721955 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:27717391..27721955 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagccgccgtgcctgggcgcgtgcagcggcggactcgccctcccggtccaccgctaccaccgcctctcctcggcgtccagggccaccgtctcgtgcgccgccgccgccgggggagggaaggcgtcgcccagggggaaggagaacgtctggagcgtcgacaacgaccgggccgccgccgccgccgcggaggcgagccggggcccgaagcaccgccgccggaggcgccccggcgggcgacgcctcccgccgccgccgcccccggggaggaggaaggggaaggatgcggcgggctcgagggttctggtctccggagccatgctcgtggaggtcgagacagtgctccaaacccagtctttattgtttgatgattcgtggtggattctgcaatacgtcccggaagatcctctcatcgatgatggggatgaagctatacgtgcattgttgtatattagtaatactgctacaggatggtatgctattttaagggaacctgttataaagccgtcttgggatacatttgcgagcagcttaagtggcgtttggaagggtgttggagccgtgttctcaccaatcacagcagaaatggagcctgttggagtgggaagcaaacaagagtacctttatgattgctacactctttctcatattgagaagcatgctgataataattatggatctgtgatccgaaggaagacaaactgggtgcagctcaatccccatggggaagctgagaaacagagtgctggatatgatagcggggatcagtacaattacagtgacaagagaacacttgatttgcctgcccatgaatcttttgatcttaagaagagcgatgtacttgatgaagattctattgctcaggagccagggattgtatattttgaggatggatcatactctagagggccggttgatctagcgattggtgaatttgatgaatcgaaatacttcatttcaccaacatataaatttgagcaatgtctggtcaaagggtgtcacaagagattgcgtattgtacatactattgagttaaatgaaggaggggctaacatacagatcgtaaggattgctgtatatgaagaaaaatgggtcagcccagcacatattcatgttgaagatgatacacctgttgatgttaagcctttatctcaaagaaagcggaccaaaccatcagaccttactggctcctggaaagtatatgaagttagtgcaactccaattttcagtgaggaaaggcaagaaattgagggtggtgccctctttgtatacttgtgcatggagacagtgaagaagagaagcctgccagagagctcggttttttttggggaggaagagatgcttgacatgcaagatgtcaccatgctttggttacctggtggtgtcactgcctatgttgatgtggacaaagacggtatactctgtataggagttggttggtactcggacgaagggattaatatggtgatggagagagactatggaactgatggaaagctcagagatgttcgatggaaaactgaagtcaagcgcaggtggaatcaaccagttctaccataa</cdnaseq>

Protein Sequence

<aaseq>MQPPCLGACSGGLALPVHRYHRLSSASRATVSCAAAAGGGKASP RGKENVWSVDNDRAAAAAAEASRGPKHRRRRRPGGRRLPPPPPPGRRKGKDAAGSRVL VSGAMLVEVETVLQTQSLLFDDSWWILQYVPEDPLIDDGDEAIRALLYISNTATGWYA ILREPVIKPSWDTFASSLSGVWKGVGAVFSPITAEMEPVGVGSKQEYLYDCYTLSHIE KHADNNYGSVIRRKTNWVQLNPHGEAEKQSAGYDSGDQYNYSDKRTLDLPAHESFDLK KSDVLDEDSIAQEPGIVYFEDGSYSRGPVDLAIGEFDESKYFISPTYKFEQCLVKGCH KRLRIVHTIELNEGGANIQIVRIAVYEEKWVSPAHIHVEDDTPVDVKPLSQRKRTKPS DLTGSWKVYEVSATPIFSEERQEIEGGALFVYLCMETVKKRSLPESSVFFGEEEMLDM QDVTMLWLPGGVTAYVDVDKDGILCIGVGWYSDEGINMVMERDYGTDGKLRDVRWKTE VKRRWNQPVLP</aaseq>

Gene Sequence

<dnaseqindica>4127..4565#2980..3119#2172..2264#824..1222#444..578#1..354#atgcagccgccgtgcctgggcgcgtgcagcggcggactcgccctcccggtccaccgctaccaccgcctctcctcggcgtccagggccaccgtctcgtgcgccgccgccgccgggggagggaaggcgtcgcccagggggaaggagaacgtctggagcgtcgacaacgaccgggccgccgccgccgccgcggaggcgagccggggcccgaagcaccgccgccggaggcgccccggcgggcgacgcctcccgccgccgccgcccccggggaggaggaaggggaaggatgcggcgggctcgagggttctggtctccggagccatgctcgtggaggtcgagacagtgctccaaacccaggtttggcactagtacagtagtacgtactatcacacgagcacgactacttaacgcgaacgtagatgtgtgccattgattcgtgcgtgtagtctttattgtttgatgattcgtggtggattctgcaatacgtcccggaagatcctctcatcgatgatggggatgaagctatacgtgcattgttgtatattagtaatactgctacaggatggtatgctattttaagggtaagcatgccagttaatgctgagtttgattcaactggtgggaaatagttgatattaactttggggaagagcatcctcagttgctcagcatcaaacagtacttagcacgtatatgggtacaaattggttgtgtacatctgtattggatgtagaggccatgttttaatccattatctgaaaagatgtacgagtacaaattaataaaggtttatgcattattctgatgttgtcattttcaatcataggaacctgttataaagccgtcttgggatacatttgcgagcagcttaagtggcgtttggaagggtgttggagccgtgttctcaccaatcacagcagaaatggagcctgttggagtgggaagcaaacaagagtacctttatgattgctacactctttctcatattgagaagcatgctgataataattatggatctgtgatccgaaggaagacaaactgggtgcagctcaatccccatggggaagctgagaaacagagtgctggatatgatagcggggatcagtacaattacagtgacaagagaacacttgatttgcctgcccatgaatcttttgatcttaagaagagcgatgtacttgatgaagattctattgctcaggagccagggattgtatattttgaggttgaattctttccattttatttacaattcatctgaaatactaggaataactttgttaattaactctatgcaaagcattataaaaactgttactatcctgtttttaccaccataagtactatgcttccttaggttggatatttaatgtggacataactggctccagcgaaaataggatattgttttgtagaactgggtctctagcatagcaactgtatagcctggacaaaaaaataaaataaaattgatggcatgttatgtaaacaaaaagttaagttgtgagagttaatgctgtaggatgattagaactatagaccattcagcgctgtgttaaagacaaattttatgctttatggtgtaatggtacattggtactcatagagcttgcttgccattcagaattgacaaaaaaattcatgtgccagaacgggcagtattattgttttggaattgtttgctcagcttaaccttaggtttattttctttgaatgcttaaccttaagttcttaccataatgacttgaaccaaacatttaggttactttagagcctaattattaaactcaaactactctgcaatatgaattgaaactgatgcatgggtcttccaaatgatccaaacaacctctatagtgtggaatgtatctcatatgctagctgtactgagttaatgactatgatacgaataaccttgatcatcacataaggtttgatctaggtcaaattgatactgagaatcactgaaaaactctttactccttttgcactaaaatgccgtgacgtttggtgtatccgttattgttcaggcagattattttctggtcattattcttccctgcgagactggactatcgttataactcttataattcaatattttttgtgctatttattcttgtttatgaaaatcctagtacttattattttggctgctgctgcttgattttcaggatggatcatactctagagggccggttgatctagcgattggtgaatttgatgaatcgaaatacttcatttcaccaacatataaatttgagcaagtatgtttattctgcttagtcttaagttatcttatcatcttctgcaaacatgctcaggttttgagttagtgcaatgataataatgtttctccgtatatgctagcatgcgcagatccggactagaaaatatttcctacaagagaattgtagatgagatgcatcccacgagtttactagttaggctttgctaataggccttttgtctaatcaagcacgatacgatgatgatgatgatgatgtaggtttgatctagtgaaagctacactgttttcatattcttgataagaaccgttttttgctcaatgtcgtcttctgagtggttgcaactttttttcatgctacaaagaaaaaaaaaccattttgatttatgcaactactgagaattaaggttcttttgagttgagtgaatggatgtcttataggacaaccataacaaagaaaagtagacaagtcttgtaatgaaatgtactcctccatatcttaaaatggtgttctaggtacttcaacttctttgttatatatttaaatttcttctcaacttagtttactactaattaactttaggcctgtaaagtataatatcgcggccattatgacttatgacttacgagtgagatgtgatttttttaatgtatgcataaattaaaacattttccccttttacattataatgctttggggttaccaattgataaattatccatctctgtttcagtgtctggtcaaagggtgtcacaagagattgcgtattgtacatactattgagttaaatgaaggaggggctaacatacagatcgtaaggattgctgtatatgaagaaaaatgggtcagcccagcacatattcatgttgaagagtaagactctgttttattcatcgcaacaagtttattcatcttcttttctgctcatgaagcatgacatatattttactgctgttcaataataatgggttactagcgagtctagaatttagttacttgtaattctagattggcataaaaattgttttacagaggccctaattttttactagctaatccacacatttgctttggattaaaagatcatacatgttctaatactgtccaaaataatgaatgtccttcaccattgttagttagatctgacaaatttgtccattctggacctttatataaagttgggtctttctaagcaaataaggagaaataaatatatggaagatagtctttctaggcaaataaagaggaataaacatgttgaaggattatagcgttatattgaagaatgtgagggggcaattcattaaaacatactgctaccaccatcttttttaaaggagtaaggaaaccttgaattgctcttcttcatttcatcatatggaatcattgttttgtatagttctgtcaacacatgttctgattctctctactgttctccaaaacatattggcctccttgtattttggaaacaatgtaatataaccttcatgactctgaaaataccatcatcatatcggtttgccattcctttaacttttagagttagtgcttacttgcttagtgtgattaaaaactagcacatcagggtcaaacacaggtagaacacctccctgataattccatgttttgctggaggggtgggttgggggagggggcgggtagtgggagaagattgcctgacaggttttcttttttttttttttttgaaaatggaaacagttccatttgtctccttaaatccccaacaaaaataattccatgtcgtccagaagaccaggactccaggtggacaggctattgtagaattgtctacctttgaacaatatatcgccttgaggactcgaagagtatttgatggactatgtttttgtttgatgcagtgatacacctgttgatgttaagcctttatctcaaagaaagcggaccaaaccatcagaccttactggctcctggaaagtatatgaagttagtgcaactccaattttcagtgaggaaaggcaagaaattgagggtggtgccctctttgtatacttgtgcatggagacagtgaagaagagaagcctgccagagagctcggttttttttggggaggaagagatgcttgacatgcaagatgtcaccatgctttggttacctggtggtgtcactgcctatgttgatgtggacaaagacggtatactctgtataggagttggttggtactcggacgaagggattaatatggtgatggagagagactatggaactgatggaaagctcagagatgttcgatggaaaactgaagtcaagcgcaggtggaatcaaccagttctaccataa</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0545200, RefSeq:Os04g0545200