Os04g0559800

From RiceWiki
Revision as of 11:22, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0559800| Description = Similar to YDA| Version = NM_001060077.1 GI:115459883 GeneID:4336647| Length = 7622 bp| Definition = Oryza sativa J...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0559800

Description

Similar to YDA

Version

NM_001060077.1 GI:115459883 GeneID:4336647

Length

7622 bp

Definition

Oryza sativa Japonica Group Os04g0559800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:28447755..28455376

Sequence Coding Region

28448963..28449476,28449748..28449839,28449932..28450168,28450455..28450562,28450655..28450714
,28451041..28451116,28451212..28451372,28451602..28451664,28451771..28451858
,28452100..28452840,28452923..28453467

Expression

GEO Profiles:Os04g0559800

Genome Context

<gbrowseImage1> name=NC_008397:28447755..28455376 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:28447755..28455376 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccaccatggtgggggaagtctttctcaaaagatgctaagaaaaccacaaaagaaaacctcatcgatacatttcatcggttgataagtccaaatgatcaaaagggaagcacgaagtcgaaacggagttgtagacgtggcaatgattcatctgttgaaaaaagctgccgatctaccacagtgtcacgtcctacttcaccgtcaaaagaagtttctcgctgccaaagcttttcagctgatagaccacatgcccatcccctccctattcctggagtacgtcctccagtgactcggactgtttctgatatcactgaatcaaagcccatattggaaaaacgtggcaagccaccactgcttctaccactccctaaacccaaccggcctccgaggaggcatggaaatagtgaggttgtttcagaaatagtggttgcttctccctctagtaactgttctgatagtgatgatcatggggattctcagcttcagagtcctgttggaaatgatgccgaaaatgcaacacttgttactttaaagaacaagtcaagtaatgcgcgcaaagaatgtcctggacctattacggcaaagaatatgaaggagatacacagaccagctaatcaagtacatggtagccatatattatccacatcaccaaggggtgtcgcagctgacagttaccaatccaatttacaaaatccccgcccattagttctggatagtgctcccaatagtttgatgtcaagtccttctagaagtccaagaagaatatgtcctgatcatattccaacttcggccttttgggcagtgaaacctcacacagatgtaacttttgttggatctggtcaatgttccagtccaggttcagggcaaacatctgggcataattctgtgggtggtgatatgctagcccagctcttttggcagcccagcagaagtagcccagagtgttcaccaattccaagtccaagaatgacaagtcctggccctagttcgagggtgcatagtggaagtgtttcaccattgcatccaaggtctggagggatggcccctgaatctccaacaaaccgtcatgatgatgggaagaagaagcaaactcacaaacttcccctaccaccactgagcatctctcacagttcatttcatccaaataactccactccaactagtcctatttcagtacctcgcagccctggtagaactgagaatccaccaagtcctgggtcacgatggaagaaggggaagctaattggccgtggaacatttggtcatgtatatgttggctttaacagtgatagtggtgaaatgtgtgcgatgaaagaagttaccctattcttggatgatcctaaatcaaaggaaagtgcaaagcagttggggcaggaaatatcactattgagccgcctacagcatccaaatatcgtacaatactatggatcagaaacggttgatgataagctttatatatacttggagtatgtatctggtggatctatccataaacttctacaagagtatggacagcttggtgaacaagcaatacgcagctacacacagcagatactttcagggttggcttatttgcatgcgaagaatacagtccatagggatattaaaggtgcaaatatactagtagatcctagtggtcgtgttaagcttgcagattttggaatggcaaaacatatcaatgggcagcagtgtcctttctcctttaagggtagtccatattggatggctccagaggttataaaaaactcaaatgggtgcaacctagctgttgacatatggagtttgggatgcactgtcctggagatggctacatcgaaaccgccatggagccagtatgaagggattgctgcaatgttcaagatcggaaatagcaaggaacttccaccaataccagatcacctttcagagccaggcaaggacttcatcagaaagtgcctgcaacgtgatccttctcaacgtcccactgcaatggagcttttgcagcacccatttgttcaaaaagcagtatcactagagaaatctgttctttctgaaccattggaacatttggctgttatatcttgtagatcgagcgccaagatggctgcgcatacaagaaatatttcctcattgggattggagggtcagacaatttaccagagaagaggtgcaaaattttcttcaaaacacagtgatatccgtatacgaagcaatatatcttgtccagtttctccatgtggaagtcctttgctaaaatcaaggtccccacaacattccaatggcagaatgtcaccttctcctatttcaagccccagaactacttcaggcacctccacgcctctgtctggtggtaatggtgctattccttttaaccatctgaagcaatcaacctacagcaacgagggatttgcaatcccatcaagaagcccggatgatctctttgccagccggcctacagatcctgatcttgggcaatttattcgagtgcatcaagtctctcaggggcttcaggagagggtggtatctgaagctgacattctaagccctcagtttggaaagagacttggaaatgtttttgatttgcgtgataagctgtcaccatctgaacgtttcacacatcatgcctttgtggatcatgtgaaactaaatccttcattagacttgacgtctggatctccacaccttggactcaagcatggtaactaa</cdnaseq>

Protein Sequence

<aaseq>MPPWWGKSFSKDAKKTTKENLIDTFHRLISPNDQKGSTKSKRSC RRGNDSSVEKSCRSTTVSRPTSPSKEVSRCQSFSADRPHAHPLPIPGVRPPVTRTVSD ITESKPILEKRGKPPLLLPLPKPNRPPRRHGNSEVVSEIVVASPSSNCSDSDDHGDSQ LQSPVGNDAENATLVTLKNKSSNARKECPGPITAKNMKEIHRPANQVHGSHILSTSPR GVAADSYQSNLQNPRPLVLDSAPNSLMSSPSRSPRRICPDHIPTSAFWAVKPHTDVTF VGSGQCSSPGSGQTSGHNSVGGDMLAQLFWQPSRSSPECSPIPSPRMTSPGPSSRVHS GSVSPLHPRSGGMAPESPTNRHDDGKKKQTHKLPLPPLSISHSSFHPNNSTPTSPISV PRSPGRTENPPSPGSRWKKGKLIGRGTFGHVYVGFNSDSGEMCAMKEVTLFLDDPKSK ESAKQLGQEISLLSRLQHPNIVQYYGSETVDDKLYIYLEYVSGGSIHKLLQEYGQLGE QAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDPSGRVKLADFGMAKHINGQQCPF SFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATSKPPWSQYEGIAAMFKIGNS KELPPIPDHLSEPGKDFIRKCLQRDPSQRPTAMELLQHPFVQKAVSLEKSVLSEPLEH LAVISCRSSAKMAAHTRNISSLGLEGQTIYQRRGAKFSSKHSDIRIRSNISCPVSPCG SPLLKSRSPQHSNGRMSPSPISSPRTTSGTSTPLSGGNGAIPFNHLKQSTYSNEGFAI PSRSPDDLFASRPTDPDLGQFIRVHQVSQGLQERVVSEADILSPQFGKRLGNVFDLRD KLSPSERFTHHAFVDHVKLNPSLDLTSGSPHLGLKHGN</aaseq>

Gene Sequence

<dnaseqindica>5901..6414#5538..5629#5209..5445#4815..4922#4663..4722#4261..4336#4005..4165#3713..3775#3519..3606#2537..3277#1910..2454#ggcctgggcctttttccgttgctaccctcctctcccccctcccctttccgattcccccactttccgcgagctcctcctctccttttgcccgcaccatcaccaccaccaccgcctccagattcccctccggctttccctccgcctgtcggatctcccccccgccggcgagctcgcctcgccgtggtggcgcgccggtaaggtatgctcgcctccttcctcctcctgccattccgctctgctcgcttcgttttttggggggtgggttctggttgtggacgctgctgctcgcgctgggctgggaagctgggatggtaaatttcgtgggtgaaagggggtgctcgccgtggatctgaggcgtgtggatttgtgctgagatctgagcgcgcggttggagggcaaaatcgattgctcccgagaggtggtaactggctgcgcttatgtaggttcgtctcgagggtactagagttagcttggacttagctctcgtgcgatggaattgctgggagtttacgattgcgactgctgtggtttgacttgtggacgggtgccgattcttctgcggatgttaactatcaggccttaagtcgctgttagttcgttagactgtagtgcaatcaactggggttcaggtaagcatggaattctctcagcatcaaagctcaatagtacacatggccaaacagaacactgggtttcgttgattgtaattcagctgcaaaagttcaccttacacccagaaacctggtgctctatcacgagtggtgtattttgtatgtatcgccacgaaactttaggttatgcagtatactggggggctttatagaatgtaatgtgtaattccaaacagaacctactttggctatcatccaatcggtggcaaatgagtgtggtctttggtacatggctggaacctctaaactcagtgagtttcttaggtcgctaaccccggttgggtaaggtgtcatttaaatgtaagcgttgtatgtgtttgtggtgagtgggggcgtttcagctcccatcccgtgtttcctcttctctcttaatgaaatgatatgcaactctcttgtgtattcaagaaaaaaaaaacagaacctactttaggtttaggtgtatatgttgccttgtacaatatgcatgtgatccttcccatgtgaatgagcgactgaaccatgcacgcaggctatcactattggtgatacatttgaagttctaggaggcaccaccgattatgccgttgtgttttactgaaaactgtgaccttgacaactccttgagtgaagtttgaaacattatttatttctagcacagtgttatgccattcaaccaaaacatacttgatatattgcactcccatggatgattgatggcagtggagataatttctttatctaatttatgactggcttaaataagcgattggtgtggttaagcaataaaaaagattcttcttataattgtagttcattttgcattgagtttgcaatggttgcttttactgattaaagattgagttgaaagaataatcataaaacactcataatgctatgggcagtctgtttctggtgttgaatcacactaattacctaggaaaaacataaatggaataacccattgtttttatcctgcaattttttcattaatagtaaatgctaaaatgtctgttaccatatgtatttcagccttttgggggtaaagaaggtgcctgacaccaccttgtggtcatcaatttgtctgcttctagctccattgccagtgcattgcggaagctgggggttctatatgggttgttaagaaaatcgtgcgctacacatgttaatctgattggcagaatatggtaattatcagcttgaataacaccgtgattagtacctagccaattagacataccacaaattatttcatattcaatatgccaccatggtgggggaagtctttctcaaaagatgctaagaaaaccacaaaagaaaacctcatcgatacatttcatcggttgataagtccaaatgatcaaaagggaagcacgaagtcgaaacggagttgtagacgtggcaatgattcatctgttgaaaaaagctgccgatctaccacagtgtcacgtcctacttcaccgtcaaaagaagtttctcgctgccaaagcttttcagctgatagaccacatgcccatcccctccctattcctggagtacgtcctccagtgactcggactgtttctgatatcactgaatcaaagcccatattggaaaaacgtggcaagccaccactgcttctaccactccctaaacccaaccggcctccgaggaggcatggaaatagtgaggttgtttcagaaatagtggttgcttctccctctagtaactgttctgatagtgatgatcatggggattctcagcttcagagtcctgttggaaatgatgccgaaaatgcaacacttgttactttaaagaacaagtcaaggtatgcttcttactgtcgtgccttctttatgcagctcttcatttaaacatgctcttacatgtcttttgttctctttctgaagtaatgcgcgcaaagaatgtcctggacctattacggcaaagaatatgaaggagatacacagaccagctaatcaagtacatggtagccatatattatccacatcaccaaggggtgtcgcagctgacagttaccaatccaatttacaaaatccccgcccattagttctggatagtgctcccaatagtttgatgtcaagtccttctagaagtccaagaagaatatgtcctgatcatattccaacttcggccttttgggcagtgaaacctcacacagatgtaacttttgttggatctggtcaatgttccagtccaggttcagggcaaacatctgggcataattctgtgggtggtgatatgctagcccagctcttttggcagcccagcagaagtagcccagagtgttcaccaattccaagtccaagaatgacaagtcctggccctagttcgagggtgcatagtggaagtgtttcaccattgcatccaaggtctggagggatggcccctgaatctccaacaaaccgtcatgatgatgggaagaagaagcaaactcacaaacttcccctaccaccactgagcatctctcacagttcatttcatccaaataactccactccaactagtcctatttcagtacctcgcagccctggtagaactgagaatccaccaagtcctgggtcacgatggaagaaggggaagctaattggccgtggaacatttggtcatgtatatgttggctttaacaggtaagaatattcctaactttgaaatttcatttttttttaaaaaatcatatgacgtactatgaatatactaagcatcttggaatttttgtaagatcttagctaagacaccatgtaactcggaatatagctctattttggctatcttactgttctctattctgggggaggggattggggccatgtaacttcggtgtccccacaatgatttgtcctcctaatgtggttttaccatttatatcagtgatagtggtgaaatgtgtgcgatgaaagaagttaccctattcttggatgatcctaaatcaaaggaaagtgcaaagcagttggggcaggtatagtctgttgattgtgctttaacctacagttgcaaaagaagttcagattatgtcttttcctgttcaatatatgattccctgtttttctttttttgtttctcaggaaatatcactattgagccgcctacagcatccaaatatcgtacaatactatggatcagaaacggtataaatgctgccttcagtctgtttacataggctaggttttcctttgcttggaaccattaactcaattattgtttcctgtttggtcattatataattatttttttcctccctttaccaagggtaacaagaagttgcatgatagcatctaggatttcattaatgagttatttatgtaccacttttgattttcttttttggcttcacttattatttgtgccccaatacaggttgatgataagctttatatatacttggagtatgtatctggtggatctatccataaacttctacaagagtatggacagcttggtgaacaagcaatacgcagctacacacagcagatactttcagggttggcttatttgcatgcgaagaatacagtccataggtagcaatttctttggttttctctcttttctttggtttgtttgtatcggtggaattatggtgtaattataagtcctgttcatcacaattttgcagggatattaaaggtgcaaatatactagtagatcctagtggtcgtgttaagcttgcagattttggaatggcaaaacatgtaagtttttctgcccactttaattttttgaaaatgacttttgtcaattgaactttattttccgtgtcattccatttctgcatctatgcctcatatcatagtcacaactgtttgaattatatcgagctcttcaaaaaatatatagcagtatctatatcaacttgatcttgtagctcctgtcactggttaatgcattgattgagtactgctgttaagggtgcttgaaaccttgctagccccctcactcctgataagttacaaaatgccttttgtataatgtggaagtattttactcattaatacgtattaaatgtgtctttatgcagatcaatgggcagcagtgtcctttctcctttaagggtagtccatattggatggctccagaggtatcactgaaaatctttacttgttaattttttgtttcatgcatatcttattgccatttctgtacatcacatactatgcaacacatacgcaggttataaaaaactcaaatgggtgcaacctagctgttgacatatggagtttgggatgcactgtcctggagatggctacatcgaaaccgccatggagccagtatgaaggggttagtattatacttctgaggcacagtttatttgttctataatatagataacctaattatggtgattttcgccatgagtgaatgggatatggaaatgttcttttcatgaattctttaagaatttatcactgtctgatgtagaatgttgaaagatcatttacttgcatgcaattttatgaaaggtgcttgaaatgtaaagacttccttcttttgactcgtaatgagacttggaagtttcaccgaagcaactttggcatgaacatttcccctcttttctttcctgcagattgctgcaatgttcaagatcggaaatagcaaggaacttccaccaataccagatcacctttcagagccaggcaaggacttcatcagaaagtgcctgcaacgtgatccttctcaacgtcccactgcaatggagcttttgcagcacccatttgttcaaaaagcagtatcactagagaaatctgttctttctgaaccattggaacatttggctgttatatcttgtagatcgagcgccaaggtaccacttgaatactgccataactgacataacatggttacatggataattcatggcctgttcactttgcttggtattatttgagttttcagatggctgcgcatacaagaaatatttcctcattgggattggagggtcagacaatttaccagagaagaggtgcaaaattttcttcaaaacacaggtacatcatttcccaatttgtgtttattaatagtattagtcctaagtccaaacaatgtgtgcaataaagcaagtacaaagtattatctgttaaaaaaatggctaatctaagttgaatgagtatcctagcactagtatgaatgagtatctcaccactagccatatggtagtaacttgtgttctcttcagtgaaactcagtcttacctggaaaatgatttgcggtgaacttccctatatatgtgcagcctctaatccttaaataactttacagtgatatccgtatacgaagcaatatatcttgtccagtttctccatgtggaagtcctttgctaaaatcaaggtccccacaacattccaatggcagaatgtcaccttctcctatttcaagccccagaactacttcaggcacctccacgcctctgtctggtggtaatggtgctattccttttaaccatctgaagcaatcaacctacagcaacgagggatttgcaatcccatcaagaagcccggatgatctctttgccagccggcctacagatcctgatcttgggcaatttattcgagtgcatcaagtctctcaggggcttcaggagagggtggtatctgaagctgacattctaagccctcagtttggaaagagacttggaaatgtttttgatttgcgtgataagctgtcaccatctgaacgtttcacacatcatgcctttgtggatcatgtgaaactaaatccttcattagacttgacgtctggatctccacaccttggactcaagcatggtaactaatatcaagaatcagtattcagatggcattttttggagcttcgaaaggtaactggtggtttggctgctttttagccatccgatggcttgaagtgtatcatagtatgaggaaaagaaaatcactaatgtctgtagaagctaaagttggcaatggatggaatctttgttgtcatcaacacaattcaagttggcaaaggtatgcatggtcacttgtcacaattcataactttctattatacgttaagtcaagactgtcctacatcatttgcagctttagtcacttactattagattaagaactggtttattggcattctagttgctagattcactccctttaaacgtcaaagcaacatggctcacaatgttgtttcctgagcttgtaaactcaacgtggccaaaagaaaagaaaagaaaaactctgatcccagctcagatggtagcactactggctagtgacatttttttcctaattgctggcatggggcttgctgccttgctgtctattatcttgctgccttgctgtgtataatctttgttcggtgtagttctgaagcacttcacctgttagcagcttatagaatctcaggtgaatcaggcactttgagagttcagaatccacatttgaaccttttgcttcagtcgttatatttattttcaggacactgaagtttgtcttgaccaatagctcttactaattttgttcaatgtaaatagcagatatcgtccattcctgttaggcagaactcccggaagcatactacaattggcgtactaacatctgtcaaatgacaagactgtatattggtaccctacagattgaaggacctccgaagtagtagttcgccgcatgtatactcctcttgcctttatatgtaacttaattttctattttcttcttggcgtcctgatgccattgtacagaggaacctcaactaagagccaagattttgcacaggagaaacagtccagccattcagtatcctctctcacacaatatctcacctgaggttgaaactactgctgcaagtcaaactgcatactgaaagtattttgtagcagaactcagccaatgagccaacttattcactgtaccagttactctggaaatttatacaaagaatcagatccttggttaaactagcttctcccgcatgtacatgttcttcagatctgcaccgtgagctatctataagactataaccattacc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0559800, RefSeq:Os04g0559800