Os04g0563500
| Gene Name |
Os04g0563500 |
|---|---|
| Description |
RNA-directed DNA polymerase (Reverse transcriptase) domain containing protein |
| Version |
NM_001187113.1 GI:297723356 GeneID:9270638 |
| Length |
6388 bp |
| Definition |
Oryza sativa Japonica Group Os04g0563500, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:28603095..28609482 |
| Sequence Coding Region |
28603095..28603526,28604427..28604798,28604980..28606887,28607149..28607301,28607851..28608276 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:28603095..28609482 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:28603095..28609482 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcaacatggttctaccagaaggcggtgctgtctcgcagtccatccgaacatgccgaccacgctgttatgatcatccatcgtgatatggactgggtttcttttgttaggccaggaggaagcaattggcaggtggcttcaactctggatgttaacgggaaagatcggtatgccgattgcgtgtaccacaatgggggcattctacattgtgacagttctggggatagtggagaaatggatcttgaaggaccgaacggaccaacgaaggaggttattgtttccaaaatgcaatatttacctggacttcttacaaggcacctggtgtctactccgtggggttacctgttgcaagtgcgtgcaatttcgcgaggtcaagtgaagaatggtacgagactccaagttcgcgaggttcatcctgatgggagcaagaaggcgcactctgctcaggccagcagcaaggcggccgcctccgagcgctcgtcggccacgcctcttgtgcgcgcagcttctcctgctcctgcaatctcagcgccatctccaaccaagcccgcgtcagctccagtgaagcctgcttgcgccaagccgatggaggagggcttgggtgccggcgacccgctcctgcgcccgcaaggcggccacggcgtcctttcttggacccccggcatgtcggcgatagagcagcgtctgagggggcgttccctggttgcctcggtgctctcggggagaaaggaggtctcgccggcgacgatggtcgccgcgctgagcggtctctgtggggtcccccctggggatgtctgcgtcgagctggctgtggagggcctcccagcccacgccatggagattgaggctgtcaagcagctcctcaacaagattgattgtcagttcatcgagctgttcgatccagttgatgcgtgtatgttggaggtgttggcctggtcggccgacccgtccaaaatcccgaaggagttcatccttgacatccccgagccgatgcaagaatggtggatgccgcctgcgactgatgatcctgacatgttcgagctgctcgtgtcacagtctcccccggccccgcccacggagaagaagtgtctcaccttcgatctcctcctgcatctcagagaggtggtcgaccccgtccggcagctgccggacagtccgtcctatgaccctttcctcgacgatcgcgaggcccctcgcaggcgcacttacaacgcattcctcggcaggatcgacggctctggcccgggccagctgttgggtggcggccacggtttcgcgggctcgagtgcggggacggcgggtggcctccagcgacagctgctcctcgaggtgggggtgcagcatgcggagccggcgcctgttgtccccctggtgctgcctacgtccgcccagcaggcgccgcctctggtgctgcctgcccccgttcagcattccgtgccgtcggtggacgggctggcggctgcacagcctctagcggcgtcggacattgcacaggacgttccttcccaggcagctgctgtggccgccgttctggggtcacctgacgtccttttggggtcggaggatatctccccgccgctcgcttcgttgagcgtcgggcaggtagctcccccttctccggtcggaggtcggacgccggacgtcgggcaggctgttgcggccgctgttctggggccgtctgacttccttcaggggccgcaattctccccgccgtcactgtccgaaggtgtggggccagcgcctggctgctcggcgccaatctctcaggctgcgaccgcccaagtgcttccgtcggccggaaaccaggcttcgacctccgccatgggtgctacgtccgtgcacacgtctccaggtgaggcggtgatcaccatgcagctagttggggtggggccaggctcattaaccagccctgcttcagcaccagcgcgtctgggtgtgaccccacctgtaagtgagctgaggcagaaggggcttgccaggcagctatcttttgatgcgcccgcccaagatttgccgtgctcagcggcattaatgtcgccacaacctccccaggctacggcgccggttgatgaggatgaacgcgcgaatacgggtttcaactcccctggggcacgagaattggcgcctctgtgtgagggggcgtcgcaaggcattttaggccttgggccctggcccgaggtgcacatctccagcccagctctggtgtactgtcgtcgccacctccgtccgactacgggccgcaagtggcctactcgtcgggctgcttctgggagcccgccgcttgccacgcaggctgtggcttctccggtacagggcgcgttgcaggatgcctcccgccctgttcctgatctgctggcgggggagattgtcacctcgctcggtgatctgatggtgcccctgccaggcgcgatcctcggcaagtttccacccccgacgccggtgcgcaggtcgcggcggatggagccgtacacacaaactcctaggcgtagtgagaggctggctgccatgaacggtgggcgtcaccagcactcggcctcgaaggcgcagcgtgtgctcatgaagaaactcggcgtggttgacgatgagaacaaggtggaagaaacagatatcctcaagtacctggagctctttaagacgccgctggtgccgtcccacatccaggccttggctgcgctctgctgcgtcaaggtgtcagcttcacagggagtggagaggtggtctgttcatttcttggcgcgccgatcgttttgctgtgagctgcctgcacaagggaacttggtcactcacgctgagtgtgaccaacttggaaggggggctgtgtggacattgactaatgtctatgggccgcaagcacctgagcaaaagctcgctgtggcacatgaagtgattcttcagttggacagggcaatggattctcgccagttgtccccggaggagcgctccctccgtgcgatactcaaggggaggtgcctcgcactcgcctcgctcgagcgcatccgtctgcgacagcgggcacgtctgcggtacctaaagcatagcgggacggcctcccaattcttccacttgaagatcaatgcacgacgtagaaagaagacaatccctatgattcagcacggtggagtttggggtgtaacacaggaagacaagctggatatggcccatgactacttctgcagcatcatgggttcaccgtcgcctccgtctgcggctcttgatctaggccgcctgggtctgccctctctcgatttattggagctcgaggtggagatcacagaagatgaagcaaagaagcatcttcatctcctgaacactgcatccatcatcctactccccaagaaagacgatccgacgcagctggcagactataggcccattagcctcatccacagcttcatcaagctcttcactaaggttctcgctactcgtctggctgctcgcatgaatgaacttgttggccccgctcagtcggcgttcatcaaatccagaagaattcaggaaaacttcttgtatgtgcaaggtgtggtacggaagattcatcgtgcaaaatgccctgctgtcctgcttaagcttgacattgcgaaagctttcgactcggtttcgtgggaattcctgattgagctgcttcgccatctgggtttcgggtccaagtggagagattgcatcgccgtgctgttgggttcctcctctaccacggtctgcatcaacggtcaggacacgcataggatccgcctggccaggggtttgcggcagggtgacccgctgtcgccgctgctcttcgatctggtgatggagaccttcgctgccctgtgtaacaccgctgtgtgtagaggtgccttgagcccgctgaccggtggtgtgcttcccttgcggacttcgctctacgcagatgacgccatcatcttcttccatccctcatccatggatgccgcctctattcgctgtctgctcagcatgatgggtgcggcaaccggtctggtctccaattactcgaagagctccatcactccaattcattgctcccaagagcaaatcgatgaggtggctgacgtgcttggttgcccggttagacaactccccattaaatacctcggtctccctctatcggtgcgcaagccggtcaaagcagacattcaaccattgatggaccgacttggtaagaaccttgccggctggaaaccaaagctcctggggcctgatgcctgccttgccatcatcaagcacatgttgatgaccctccctctctattttatgtctgtgcttgagttaccgtcgtgggcgatcaaggagatcgaacggaagtgtaggggattcctttggaaaggcgatgagaacgcagccgggacttgcagccttgtggcatag</cdnaseq> |
| Protein Sequence |
<aaseq>MATWFYQKAVLSRSPSEHADHAVMIIHRDMDWVSFVRPGGSNWQ VASTLDVNGKDRYADCVYHNGGILHCDSSGDSGEMDLEGPNGPTKEVIVSKMQYLPGL LTRHLVSTPWGYLLQVRAISRGQVKNGTRLQVREVHPDGSKKAHSAQASSKAAASERS SATPLVRAASPAPAISAPSPTKPASAPVKPACAKPMEEGLGAGDPLLRPQGGHGVLSW TPGMSAIEQRLRGRSLVASVLSGRKEVSPATMVAALSGLCGVPPGDVCVELAVEGLPA HAMEIEAVKQLLNKIDCQFIELFDPVDACMLEVLAWSADPSKIPKEFILDIPEPMQEW WMPPATDDPDMFELLVSQSPPAPPTEKKCLTFDLLLHLREVVDPVRQLPDSPSYDPFL DDREAPRRRTYNAFLGRIDGSGPGQLLGGGHGFAGSSAGTAGGLQRQLLLEVGVQHAE PAPVVPLVLPTSAQQAPPLVLPAPVQHSVPSVDGLAAAQPLAASDIAQDVPSQAAAVA AVLGSPDVLLGSEDISPPLASLSVGQVAPPSPVGGRTPDVGQAVAAAVLGPSDFLQGP QFSPPSLSEGVGPAPGCSAPISQAATAQVLPSAGNQASTSAMGATSVHTSPGEAVITM QLVGVGPGSLTSPASAPARLGVTPPVSELRQKGLARQLSFDAPAQDLPCSAALMSPQP PQATAPVDEDERANTGFNSPGARELAPLCEGASQGILGLGPWPEVHISSPALVYCRRH LRPTTGRKWPTRRAASGSPPLATQAVASPVQGALQDASRPVPDLLAGEIVTSLGDLMV PLPGAILGKFPPPTPVRRSRRMEPYTQTPRRSERLAAMNGGRHQHSASKAQRVLMKKL GVVDDENKVEETDILKYLELFKTPLVPSHIQALAALCCVKVSASQGVERWSVHFLARR SFCCELPAQGNLVTHAECDQLGRGAVWTLTNVYGPQAPEQKLAVAHEVILQLDRAMDS RQLSPEERSLRAILKGRCLALASLERIRLRQRARLRYLKHSGTASQFFHLKINARRRK KTIPMIQHGGVWGVTQEDKLDMAHDYFCSIMGSPSPPSAALDLGRLGLPSLDLLELEV EITEDEAKKHLHLLNTASIILLPKKDDPTQLADYRPISLIHSFIKLFTKVLATRLAAR MNELVGPAQSAFIKSRRIQENFLYVQGVVRKIHRAKCPAVLLKLDIAKAFDSVSWEFL IELLRHLGFGSKWRDCIAVLLGSSSTTVCINGQDTHRIRLARGLRQGDPLSPLLFDLV METFAALCNTAVCRGALSPLTGGVLPLRTSLYADDAIIFFHPSSMDAASIRCLLSMMG AATGLVSNYSKSSITPIHCSQEQIDEVADVLGCPVRQLPIKYLGLPLSVRKPVKADIQ PLMDRLGKNLAGWKPKLLGPDACLAIIKHMLMTLPLYFMSVLELPSWAIKEIERKCRG FLWKGDENAAGTCSLVA</aaseq> |
| Gene Sequence |
<dnaseqindica>1..432#1333..1704#1886..3793#4055..4207#4757..5182#5318..6388#atggcaacatggttctaccagaaggcggtgctgtctcgcagtccatccgaacatgccgaccacgctgttatgatcatccatcgtgatatggactgggtttcttttgttaggccaggaggaagcaattggcaggtggcttcaactctggatgttaacgggaaagatcggtatgccgattgcgtgtaccacaatgggggcattctacattgtgacagttctggggatagtggagaaatggatcttgaaggaccgaacggaccaacgaaggaggttattgtttccaaaatgcaatatttacctggacttcttacaaggcacctggtgtctactccgtggggttacctgttgcaagtgcgtgcaatttcgcgaggtcaagtgaagaatggtacgagactccaagttcgcgaggttcatcctgatgggagcaagaaggtatcaccaaaatcaaaatcaacaatgccctaaaagaacatgtgatatttctcgggttgaatcactcggcatgtttgcgcaccaagaatttctcggggctaaggcctcgttgcatctatttttctgctcctttgatgagaagcacatgtgatctcctttatatttgtcatggatggggaggcggtaggacctatgacatgtttccccctctgtgtacgtaaaaaggctataacccctttccatccgaggtttggatcacaccaaatatgtaatggaataatctactttaatctcagaaatattgtaatttgtctactttaatcctcttacgcatgaagtcacatattttacttccgaagtactcactccgtttcaaaaagagtgtctttgcagaaaaccaatggcgaaaagatgagagagagtgtgagagcctcgtcgcccacctacccaccacctcgcccggcggccgctcgctccgacggccgtcggccaggaaaagcccccgttgaccctgccccctcctgggctgatgtcgccagggccccgccggcctctcgtccgtccttgtcgcaggaggagctggacgcgggttggcgtgtggtgaagcgcaggagtaaagtcgctcctgctgccggccggacaaccaccgcatttactcccccggagcgacgccctatcccccgttggctccttggcaggtgcttccgttgcctaggtttggaccatcttaaagccgcctgcagcgaacatccaaggtgctaccgttgttggttccctggccacctcgagcgtaactgctacgttgacctcgacgccaccccgccgcggaaggtccctgctgcggcgccggcagcgcccctccgacagccatcttctggtttctctgtgtctgctccctaggcgcactctgctcaggccagcagcaaggcggccgcctccgagcgctcgtcggccacgcctcttgtgcgcgcagcttctcctgctcctgcaatctcagcgccatctccaaccaagcccgcgtcagctccagtgaagcctgcttgcgccaagccgatggaggagggcttgggtgccggcgacccgctcctgcgcccgcaaggcggccacggcgtcctttcttggacccccggcatgtcggcgatagagcagcgtctgagggggcgttccctggttgcctcggtgctctcggggagaaaggaggtctcgccggcgacgatggtcgccgcgctgagcggtctctgtggggtcccccctggggatgtctgcgtcgaggtctccaggccgtcggacttcctcctctcgttccggcgagaagaggactgctcgggcatgctcgcgtggtcggggcgcttcaacgcggggggggggggggggggggggggctctggtttccttcaagcgctggcatcgcgcggtccacgcccgaacctccaagcttcttttcgtcgtcaagctggctgtggagggcctcccagcccacgccatggagattgaggctgtcaagcagctcctcaacaagattgattgtcagttcatcgagctgttcgatccagttgatgcgtgtatgttggaggtgttggcctggtcggccgacccgtccaaaatcccgaaggagttcatccttgacatccccgagccgatgcaagaatggtggatgccgcctgcgactgatgatcctgacatgttcgagctgctcgtgtcacagtctcccccggccccgcccacggagaagaagtgtctcaccttcgatctcctcctgcatctcagagaggtggtcgaccccgtccggcagctgccggacagtccgtcctatgaccctttcctcgacgatcgcgaggcccctcgcaggcgcacttacaacgcattcctcggcaggatcgacggctctggcccgggccagctgttgggtggcggccacggtttcgcgggctcgagtgcggggacggcgggtggcctccagcgacagctgctcctcgaggtgggggtgcagcatgcggagccggcgcctgttgtccccctggtgctgcctacgtccgcccagcaggcgccgcctctggtgctgcctgcccccgttcagcattccgtgccgtcggtggacgggctggcggctgcacagcctctagcggcgtcggacattgcacaggacgttccttcccaggcagctgctgtggccgccgttctggggtcacctgacgtccttttggggtcggaggatatctccccgccgctcgcttcgttgagcgtcgggcaggtagctcccccttctccggtcggaggtcggacgccggacgtcgggcaggctgttgcggccgctgttctggggccgtctgacttccttcaggggccgcaattctccccgccgtcactgtccgaaggtgtggggccagcgcctggctgctcggcgccaatctctcaggctgcgaccgcccaagtgcttccgtcggccggaaaccaggcttcgacctccgccatgggtgctacgtccgtgcacacgtctccaggtgaggcggtgatcaccatgcagctagttggggtggggccaggctcattaaccagccctgcttcagcaccagcgcgtctgggtgtgaccccacctgtaagtgagctgaggcagaaggggcttgccaggcagctatcttttgatgcgcccgcccaagatttgccgtgctcagcggcattaatgtcgccacaacctccccaggctacggcgccggttgatgaggatgaacgcgcgaatacgggtttcaactcccctggggcacgagaattggcgcctctgtgtgagggggcgtcgcaaggcattttaggccttgggccctggcccgaggtgcacatctccagcccagctctggtgtactgtcgtcgccacctccgtccgactacgggccgcaagtggcctactcgtcgggctgcttctgggagcccgccgcttgccacgcaggctgtggcttctccggtacagggcgcgttgcaggatgcctcccgccctgttcctgatctgctggcgggggagattgtcacctcgctcggtgatctgatggtgcccctgccaggcgcgatcctcggcaagtttccacccccgacgccggtgcgcaggtcgcggcggatggagccgtacacacaaactcctaggcgtagtgagaggctggctgccatgaacggtgggcgtcaccagcactcggcctcgaaggcgcagcgtgtgctcatgaagaaactcggcgtggttgacgatgagaacaaggtggaagaaacagatatcctcaagtacctggagctctttaagacgccgctggtgccgtcccacatccaggccttggctgcgctctgctgcgtcaaggtgtcagcttcacagggagtggaggtcttctgatgtcgcgcctgttccttaattgttgtagcctcttcctctgtttctaatgtcttgctctctgttagtttggaatgtaagggggctgaataaccccagtaagaggtctctcgtagcaggggtggtgagatcgtctggtgcttccattttctgttgtcaagagtcgaagttggctgcgctggataggcagcttgtagtgcaatcttgtggctctttgttggataattttgagttcatcccgtctgatggttccagaggtggtctgttcatttcttggcgcgccgatcgttttgctgtgagctgcctgcacaagggaacttggtcactcacgctgagtgtgaccaacttggaaggggggctgtgtggacattgactaatgtctatgggccgcaagcacctgagcaaaaggtgcagttccttaatgaactgacgaccgtgggtcagcatcatgtccagggagcatggtgcatcgtgggggattttaatctcctggcggcggaatcagataagaacaaccagaatgttgacagacgcatgatcaaccggttcagatgtttgctgaacctgctggagctcagggagctttatctgttcggccgtcgcttcacttggagcagcgaacaagagtcaccgactcttaccaagatcgacaaagtcctggtgaatgcggagtgggaggactttttccgggatgcgcacctgcaagctctcagctcgtcggcttcggatcattgtcctcttcttttggcttgtgatgcaatggtccacaggccgcgaagattcaaatttgaggcgttctggctgcacctggatggtttcgacgagattgttcgggctgcctgggaatcggccccggcaggctcaaatgccttcagttctcttcactttaagctcaaggctacggcgacggcacttaaaccatggggagcacatcgcatttgtgagctgcgcttgcagctcgctgtggcacatgaagtgattcttcagttggacagggcaatggattctcgccagttgtccccggaggagcgctccctccgtgcgatactcaaggggaggtgcctcgcactcgcctcgctcgagcgcatccgtctgcgacagcgggcacgtctgcggtacctaaagcatagcgggacggcctcccaattcttccacttgaagatcaatgcacgacgtagaaagaagacaatccctatgattcagcacggtggagtttggggtgtaacacaggaagacaagctggatatggcccatgactacttctgcagcatcatgggttcaccgtcgcctccgtctgcggctcttgatctaggccgcctgggtctgccctctctcgatttattggagctcgaggtggagatcacagaagatgaagcaaagaaggtgatgttagagatgcccgtggacagggctccgggaccggacggtttcggcgcagccttctatagaagatgctagaatattgtgaaggatgatgtggtagcagccctcaacctagtgttcaacgctaattcgcagcatcttcatctcctgaacactgcatccatcatcctactccccaagaaagacgatccgacgcagctggcagactataggcccattagcctcatccacagcttcatcaagctcttcactaaggttctcgctactcgtctggctgctcgcatgaatgaacttgttggccccgctcagtcggcgttcatcaaatccagaagaattcaggaaaacttcttgtatgtgcaaggtgtggtacggaagattcatcgtgcaaaatgccctgctgtcctgcttaagcttgacattgcgaaagctttcgactcggtttcgtgggaattcctgattgagctgcttcgccatctgggtttcgggtccaagtggagagattgcatcgccgtgctgttgggttcctcctctaccacggtctgcatcaacggtcaggacacgcataggatccgcctggccaggggtttgcggcagggtgacccgctgtcgccgctgctcttcgatctggtgatggagaccttcgctgccctgtgtaacaccgctgtgtgtagaggtgccttgagcccgctgaccggtggtgtgcttcccttgcggacttcgctctacgcagatgacgccatcatcttcttccatccctcatccatggatgccgcctctattcgctgtctgctcagcatgatgggtgcggcaaccggtctggtctccaattactcgaagagctccatcactccaattcattgctcccaagagcaaatcgatgaggtggctgacgtgcttggttgcccggttagacaactccccattaaatacctcggtctccctctatcggtgcgcaagccggtcaaagcagacattcaaccattgatggaccgacttggtaagaaccttgccggctggaaaccaaagctcctggggcctgatgcctgccttgccatcatcaagcacatgttgatgaccctccctctctattttatgtctgtgcttgagttaccgtcgtgggcgatcaaggagatcgaacggaagtgtaggggattcctttggaaaggcgatgagaacgcagccgggacttgcagccttgtggcatag</dnaseqindica> 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| External Link(s) |
