Os04g0567200

From RiceWiki
Revision as of 11:23, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0567200| Description = Protein of unknown function UPF0005 family protein| Version = NM_001060121.1 GI:115459971 GeneID:4336695| Length = 2...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0567200

Description

Protein of unknown function UPF0005 family protein

Version

NM_001060121.1 GI:115459971 GeneID:4336695

Length

2487 bp

Definition

Oryza sativa Japonica Group Os04g0567200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:28898502..28900988

Sequence Coding Region

28898980..28900028,28900183..28900323,28900430..28900781

Expression

GEO Profiles:Os04g0567200

Genome Context

<gbrowseImage1> name=NC_008397:28898502..28900988 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:28898502..28900988 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgcggtggcgaatggcggtgctgcgccggagtggcgggtgacggtgccggagggcgcgacggtgacggtggagcgcgaggccggccgctgccggcgggccgccgtggtgtgggcgtggcagctggtttcctgcgtcgccgcgctcgggagcagggcgtccggcctcgccgggcgtgtctggaagatcggcgcggacgacccccggagggcggtgcacggcgtcaaggtcggcctcgcgctcgccctcgtctccgtgttctactacaccaggcccctctacgacggcgtcggcggcgccgccatgtgggccgtcatgaccgtcgtcgtcgtcttcgagttcaccgttggtggctgtgtgtacaaggggttcaaccgggccacggcgacggtgagcgccggggcggtcgcgctcggcgtgcactggatcgcgagcaagtccggcgacaagctcgagccggtcgtccgcagcggctcggttttccttcttgccgcggcggcgacgttctcgcggttcataccgacggtgaaggcgcggttcgactacggggtgaccatcttcatcctgacgtacagcctggtggccgtgtcggggtaccgcgtggacgcgctggtggcgatggcgcagcagcgggtctccaccatcgccatcggcatcttcatctgcctcgccgtctgcttgctcatctgccccgtgtgggccgggcaggagctgcaccgcctcaccgcccgcaacatggacaagctcgccggcgccgtcgaggcctgcgtcgagggctacttcgtcgcgggagaggaggaggcggcggggccggagtacaagcggcggccggcggctgctgcggcggcggaggggtacaagtgcgtgctcaactccaaggcgtccgaggacgcgcaggcgaacctggcgcggtgggagcccgcgcacggcaggttcggcttccgccacccgtacgcacagtacaaggccgtcggcgccgccatgcgccactgcgcgtactgcgtcgaggccctgagcggctgcatccgctccgcggaggcccagtcgcccgagggcgtcaatcgccacctcgccggcgcgtccacgagggtggcgacgcggtgcgcggcggtgctcagggaggcctcgagctccgtcgccgcgatgacgacgccgtcccggggcctcgacttcgccgtggcggacatgaacaccgccgttcaggagctccagagcgaggtgcgggagctcccgtccaagctggccgccgccgccggggagccggccgcggcgcagcagctgatggacgccgtgcagctgctcacggtgacctcgctgctgatcgaggtgtcggcgaggatcgagggcgtcgtggacgccgtcgacacgctcgccaccctcgcggcgttcagatcagctgacgacgacgacgacgacgacgacgaaaagccaacaacagaagcagatgccaagctgcaaaccgtgagcgatcacgtcacggtcgaaccggaagcggctgcggctgcggctcggacaacaaagaacattgaacaagtttaa</cdnaseq>

Protein Sequence

<aaseq>MAAVANGGAAPEWRVTVPEGATVTVEREAGRCRRAAVVWAWQLV SCVAALGSRASGLAGRVWKIGADDPRRAVHGVKVGLALALVSVFYYTRPLYDGVGGAA MWAVMTVVVVFEFTVGGCVYKGFNRATATVSAGAVALGVHWIASKSGDKLEPVVRSGS VFLLAAAATFSRFIPTVKARFDYGVTIFILTYSLVAVSGYRVDALVAMAQQRVSTIAI GIFICLAVCLLICPVWAGQELHRLTARNMDKLAGAVEACVEGYFVAGEEEAAGPEYKR RPAAAAAAEGYKCVLNSKASEDAQANLARWEPAHGRFGFRHPYAQYKAVGAAMRHCAY CVEALSGCIRSAEAQSPEGVNRHLAGASTRVATRCAAVLREASSSVAAMTTPSRGLDF AVADMNTAVQELQSEVRELPSKLAAAAGEPAAAQQLMDAVQLLTVTSLLIEVSARIEG VVDAVDTLATLAAFRSADDDDDDDDEKPTTEADAKLQTVSDHVTVEPEAAAAAARTTK NIEQV</aaseq>

Gene Sequence

<dnaseqindica>961..2009#666..806#208..559#aagagcaggagcatcagcttattaccaatctttttcattcccctctcttggaacgtgctggtctcctcgcttctacactctcttgatcagctctcaccactatgtacacttgatcgtcatttgccacaagttaaaattgatacagagcaacacaaagagctaaactaggggcagtaacgcggtagttgtactcgatcatatcgatccatggctgcggtggcgaatggcggtgctgcgccggagtggcgggtgacggtgccggagggcgcgacggtgacggtggagcgcgaggccggccgctgccggcgggccgccgtggtgtgggcgtggcagctggtttcctgcgtcgccgcgctcgggagcagggcgtccggcctcgccgggcgtgtctggaagatcggcgcggacgacccccggagggcggtgcacggcgtcaaggtcggcctcgcgctcgccctcgtctccgtgttctactacaccaggcccctctacgacggcgtcggcggcgccgccatgtgggccgtcatgaccgtcgtcgtcgtcttcgagttcaccgttggtaagtgtgtgaccgatcgatcgatatgactgtccgcgtcacacacgtacgtcgtcgcagacgtagatggattttctaatgtggcatgcgcatgcatgcgttgcaggtggctgtgtgtacaaggggttcaaccgggccacggcgacggtgagcgccggggcggtcgcgctcggcgtgcactggatcgcgagcaagtccggcgacaagctcgagccggtcgtccgcagcggctcggttttccttcttggtacgtataccactataccacgacgaccgaactcagtgtgtgtacgtactaacgtacacgtcgacgttgtgcgtatttgtacggacgtgtacgtgcattattccacagtatttgaatgaaactgaaacgtgattatttatttacgtacgtgcagccgcggcggcgacgttctcgcggttcataccgacggtgaaggcgcggttcgactacggggtgaccatcttcatcctgacgtacagcctggtggccgtgtcggggtaccgcgtggacgcgctggtggcgatggcgcagcagcgggtctccaccatcgccatcggcatcttcatctgcctcgccgtctgcttgctcatctgccccgtgtgggccgggcaggagctgcaccgcctcaccgcccgcaacatggacaagctcgccggcgccgtcgaggcctgcgtcgagggctacttcgtcgcgggagaggaggaggcggcggggccggagtacaagcggcggccggcggctgctgcggcggcggaggggtacaagtgcgtgctcaactccaaggcgtccgaggacgcgcaggcgaacctggcgcggtgggagcccgcgcacggcaggttcggcttccgccacccgtacgcacagtacaaggccgtcggcgccgccatgcgccactgcgcgtactgcgtcgaggccctgagcggctgcatccgctccgcggaggcccagtcgcccgagggcgtcaatcgccacctcgccggcgcgtccacgagggtggcgacgcggtgcgcggcggtgctcagggaggcctcgagctccgtcgccgcgatgacgacgccgtcccggggcctcgacttcgccgtggcggacatgaacaccgccgttcaggagctccagagcgaggtgcgggagctcccgtccaagctggccgccgccgccggggagccggccgcggcgcagcagctgatggacgccgtgcagctgctcacggtgacctcgctgctgatcgaggtgtcggcgaggatcgagggcgtcgtggacgccgtcgacacgctcgccaccctcgcggcgttcagatcagctgacgacgacgacgacgacgacgacgaaaagccaacaacagaagcagatgccaagctgcaaaccgtgagcgatcacgtcacggtcgaaccggaagcggctgcggctgcggctcggacaacaaagaacattgaacaagtttaaaccggttcacgtcaaaatccaacgaacgagtcgatcgaaccgggcagattaagccggttctcgatgggtttcgtcactcccgcaccatatgccacttccaagcggcaaccggtccgagtggccgagtcagagtggggaataaaaaagcaatcgccgtaaaaccttgatcactgttggttcagaggaaaagttgacacatgcagatagcatcaaggagaaatggggaataaaaaagctcacttatcataaagttgtcaatacggcattgtggctttcatgccatgaatgtaggcacgtatagcgtcaaatccatgttagtgcgttgttatttttaattataccagataaccagaatgttatttgatctgatcccatataggagcaggaaagaaagttcagggcctgtcatatatggtcgtcatgcacgcaccattttctttctctaatcacagtacaaaggctaccagattttcttggt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0567200, RefSeq:Os04g0567200