Os04g0582000

From RiceWiki
Revision as of 11:24, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0582000| Description = Conserved hypothetical protein| Version = NM_001060192.2 GI:297603233 GeneID:4336770| Length = 4107 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0582000

Description

Conserved hypothetical protein

Version

NM_001060192.2 GI:297603233 GeneID:4336770

Length

4107 bp

Definition

Oryza sativa Japonica Group Os04g0582000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:29811243..29815349

Sequence Coding Region

29811243..29811269,29811386..29811602,29811684..29811939,29812062..29812389,29812474..29812904
,29813331..29813480,29813529..29813715,29814026..29814067,29814324..29814872
,29815095..29815349

Expression

GEO Profiles:Os04g0582000

Genome Context

<gbrowseImage1> name=NC_008397:29811243..29815349 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:29811243..29815349 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggagacgcctcccggatagacccaagctgcggatctgggtggcggtggcggggggattcacaccacaaggcgctttggagcagcctggacgacggcggggatgcagagggcagcggcccggatggccccgcggacggcgcggcgacttggggtcgacgaagcagcgagggcggcgggcgtagggccagcggcgccggcggcggggaactgggcgacgagcgtcgcatgcttacctttcaactcctgaagttggtgaaaaggatcccagagacgttcacttcatcgtcaaattactttaactcatttacctacccattacttgaagaaacacatgttgatgtcttttcatcgttggatggttattctcaccaaaacttcatatcagtagcccgaatgaaggaactgctgcatgacgatgagaccacgttcttctgttttgaggttgcaaatccagcaaaggatgagaaatccaaggaaacatatgcgccatgtgagggtgatataatagtccttacctcccgaaagcccaagcaagtgtctgatttgacacgaaatatgacttcgtacatcctaggttcaattgtcaaaggtggtgaagacgatgatgatctcccagacaattgcttcattgctagattgtcatcagtgcttccagtggaaactgattcttcaacaaatgaaccaaaggagccattgttcgcggtaatcctcataaatatgaagacatacgatcggatttgggattgtcttcacaagggaaacagccatattgttgatacagtctggcggtacaagtcaaagtttcaactacctattgctctgactgttgcttttgcaactaaagaagtggatgaggctatgtcatcaagctcccaattatctcaacggttcgctgctagatcagccgttgatcttaatcttgagaagtacatgctcaacaattcacaactgaatgctgttgcagattgtgttctggtctcagaaaaaatctcttctcctattaaactaatatggggacctcctaggacgggacaccggacacttacttgtgcccctactaatactgctgtcctagaggttgcatctcgaattgtcaagctcgttcatgagtctcctgctagcagtggccaatatctaagcgacatcgttttgtttggaaacaagaagaggatgaagatagggcatggggacagtgatccactcaagtggccagatctgctagcctcagtgcacacggatgtgtgcaacaaatcaaagatcagaaaggcaagattactctgtgttcgaatattaagatatctgaagatcaacttgaagcttcctgattgggatcgcttgagcctttctgatgatgaccgcaagagagaaattcgagtctacctgttgcaaagaacaaaatgcattctctgcactgtttctagttcttatgtgttgcacaatgtgtccatggatgacaggtctgagtgcttgaaacctctggaactgttggttgtagatgaagctgcacagttaaaagagtgtgagaccttaattcccatgcagttgcctggcataaagcaagctgtttttatcggagacgaatgccagctacctgctctggttaaaagcaaaatttctgataatgctgatttcggaagaagtgtttttgagaggttaagttccttgggctacaacaagcacctcctgaacattcagtacaggatgcgaccagagataagcaagtttccagttgccagtttttatgatggcaagatctcagatggtccaaatgttgtcagcaagaactacaagaggaacattttgccaggcaaaatgtttggaccttactcgtttataaatgtagatggtggccatgaaacaactgaaaaacatggccggagccttaaaaataccatagaagttgctgctgtgctgtggatcgtgcggagactatttgaagaatcggtttttttgggaagcaagctcactgttggtgtagtgtcaccgtacaatgctcaagttagagctatccaagagaaaattggtaagacttacgatatgtatgatgatttctctgtgaaggtaaaatcggtggatggtttccaaggtgcggaggaggatgtcatcatcatatctactgtcagaagtaatagagctggttcagttgggtttctcacaaacctgcagcggacaaatatggctctgacaagggctaagcactgtttgtggatagtaggaaatgggacgactttgtccaacagtagatctgtttggcagaaagtggtgaatgatgcaaagcatcgaggttgctttttcgaggcaagcgagtataaacatttatccaatgcaattgtcaatgctgttattgagctcgatgatgctgagaatttagtaaaaatggactcgctccagatcaccaatcccaggtttcagagagccgggtcgaggtaccgtgcatga</cdnaseq>

Protein Sequence

<aaseq>MGDASRIDPSCGSGWRWRGDSHHKALWSSLDDGGDAEGSGPDGP ADGAATWGRRSSEGGGRRASGAGGGELGDERRMLTFQLLKLVKRIPETFTSSSNYFNS FTYPLLEETHVDVFSSLDGYSHQNFISVARMKELLHDDETTFFCFEVANPAKDEKSKE TYAPCEGDIIVLTSRKPKQVSDLTRNMTSYILGSIVKGGEDDDDLPDNCFIARLSSVL PVETDSSTNEPKEPLFAVILINMKTYDRIWDCLHKGNSHIVDTVWRYKSKFQLPIALT VAFATKEVDEAMSSSSQLSQRFAARSAVDLNLEKYMLNNSQLNAVADCVLVSEKISSP IKLIWGPPRTGHRTLTCAPTNTAVLEVASRIVKLVHESPASSGQYLSDIVLFGNKKRM KIGHGDSDPLKWPDLLASVHTDVCNKSKIRKARLLCVRILRYLKINLKLPDWDRLSLS DDDRKREIRVYLLQRTKCILCTVSSSYVLHNVSMDDRSECLKPLELLVVDEAAQLKEC ETLIPMQLPGIKQAVFIGDECQLPALVKSKISDNADFGRSVFERLSSLGYNKHLLNIQ YRMRPEISKFPVASFYDGKISDGPNVVSKNYKRNILPGKMFGPYSFINVDGGHETTEK HGRSLKNTIEVAAVLWIVRRLFEESVFLGSKLTVGVVSPYNAQVRAIQEKIGKTYDMY DDFSVKVKSVDGFQGAEEDVIIISTVRSNRAGSVGFLTNLQRTNMALTRAKHCLWIVG NGTTLSNSRSVWQKVVNDAKHRGCFFEASEYKHLSNAIVNAVIELDDAENLVKMDSLQ ITNPRFQRAGSRYRA</aaseq>

Gene Sequence

<dnaseqindica>4081..4107#3748..3964#3411..3666#2961..3288#2446..2876#1870..2019#1635..1821#1283..1324#478..1026#1..255#atgggagacgcctcccggatagacccaagctgcggatctgggtggcggtggcggggggattcacaccacaaggcgctttggagcagcctggacgacggcggggatgcagagggcagcggcccggatggccccgcggacggcgcggcgacttggggtcgacgaagcagcgagggcggcgggcgtagggccagcggcgccggcggcggggaactgggcgacgagcgtcgcatgcttacctttcaactcctgaagttggtacttagttttagaattctgtaactggattgtatactcttgtttctgaaatttaatgcaagctcctatcttccctaaaaacatttcgttttttggtctaccccttcctgtcaaataaatttgacattgggagtattagttcaagtacccccaacatcaaatatatttgaccggcgggagtagtattgagtcacagatagttgattatttgtttctttccaggtgaaaaggatcccagagacgttcacttcatcgtcaaattactttaactcatttacctacccattacttgaagaaacacatgttgatgtcttttcatcgttggatggttattctcaccaaaacttcatatcagtagcccgaatgaaggaactgctgcatgacgatgagaccacgttcttctgttttgaggttgcaaatccagcaaaggatgagaaatccaaggaaacatatgcgccatgtgagggtgatataatagtccttacctcccgaaagcccaagcaagtgtctgatttgacacgaaatatgacttcgtacatcctaggttcaattgtcaaaggtggtgaagacgatgatgatctcccagacaattgcttcattgctagattgtcatcagtgcttccagtggaaactgattcttcaacaaatgaaccaaaggagccattgttcgcggtaatcctcataaatatgaagacatacgatcggatttgggattgtcttcacaagggaaacagccatattgttgatacagtctggcggtacaagtcaaaggtattttcagtttgtagacgcataataaaaaaatgtgggacactgtggtttagcctggtctcgatttaattaagaaggaataggcacccaaattctagttaaatagtagtgggggggggtgtaaaccacaccctccaaccaaagagctagggccaattccttgtagagcataatagcatatctatttgtcatgtctaattgtcttattgtttgagtcattaaattcagcaccctattggctcttgatgcatgatagtttcaactacctattgctctgactgttgcttttgcaactaaagtaagaaacacacttaaaagttacaatcttggcattcctatttgcgctaaattagcttgagtagtgatgtttttggaatttgaagtgcgggtcatgcttcttggctaccacacatgtgttaaatcttcagtatgttgtttagattggaatatgaatctgatatattttaaagattcaaatgatacagtgcccttatttgtcaacacttggtaatgaactaatggcattttcccaagtgcatataaacaacactatcttgttagtagtatttctgatgattgaattgtttgcacaacgtttatttgtgaaggaagtggatgaggctatgtcatcaagctcccaattatctcaacggttcgctgctagatcagccgttgatcttaatcttgagaagtacatgctcaacaattcacaactgaatgctgttgcagattgtgttctggtctcagaaaaaatctcttctcctattaaactaatatggggacctcctaggacgggtaaaaccaaaaccatcagtgctttactctgggtaatgttgcattcaggacaccggacacttacttgtgcccctactaatactgctgtcctagaggttgcatctcgaattgtcaagctcgttcatgagtctcctgctagcagtggccaatatctaagcgacatcgttttgtttggaaacaagaagaggatgaagataggtgaagatcatgatctctctgtggtttttctcagctctcgcaccgagcggctgtcacaatgttttgagagtatgaaaggatggaatcattgcttgtgttcactaatagattttcttgagatacctgtgacaaaaaaaatacaagtggtacactgttcagatgaaaatgaaaggaccaaattcagtagttctaccactcaaggaatttgtcaaggacaaatgcaatgaacttttggaagatttctactatttcatggagatattatgcactgattttccacgaaactccatgatgcgtcagagcttccagtacatgaatgaggtggttgaaccattgaatattctccatatattctccatgcattgataaatgttaatgataataatgatgacaatttatggttcgatgatctcttgaatggaaaagggcatggggacagtgatccactcaagtggccagatctgctagcctcagtgcacacggatgtgtgcaacaaatcaaagatcagaaaggcaagattactctgtgttcgaatattaagatatctgaagatcaacttgaagcttcctgattgggatcgcttgagcctttctgatgatgaccgcaagagagaaattcgagtctacctgttgcaaagaacaaaatgcattctctgcactgtttctagttcttatgtgttgcacaatgtgtccatggatgacaggtctgagtgcttgaaacctctggaactgttggttgtagatgaagctgcacagttaaaagagtgtgagaccttaattcccatgcagttgcctggcataaagcaagctgtttttatcggagacgaatgccagctacctgctctggttaaaagcaaagtatgtgtctagtgctaatgctttattccactttgttttcccatgtttaaacttcaaaataaccaagtgtttttactcttgcagatttctgataatgctgatttcggaagaagtgtttttgagaggttaagttccttgggctacaacaagcacctcctgaacattcagtacaggatgcgaccagagataagcaagtttccagttgccagtttttatgatggcaagatctcagatggtccaaatgttgtcagcaagaactacaagaggaacattttgccaggcaaaatgtttggaccttactcgtttataaatgtagatggtggccatgaaacaactgaaaaacatggccggagccttaaaaataccatagaagttgctgctgtgctgtggatcgtgcggagactatttgaaggtaggatcatctgcatttctggagctttggtgctataaatgatatatgtgaacataatatgtatgatattcatgctgtcttaaccaccagtattgctaaccccgcatcttttgttgttacagaatcggtttttttgggaagcaagctcactgttggtgtagtgtcaccgtacaatgctcaagttagagctatccaagagaaaattggtaagacttacgatatgtatgatgatttctctgtgaaggtaaaatcggtggatggtttccaaggtgcggaggaggatgtcatcatcatatctactgtcagaagtaatagagctggttcagttgggtttctcacaaacctgcagcggacaaatatggctctgacaagggctaagtaagtgtaatgattgcccttacaattaacaatttgctaattgctccttttagttagttatttggcttatgtttgtggcaggcactgtttgtggatagtaggaaatgggacgactttgtccaacagtagatctgtttggcagaaagtggtgaatgatgcaaagcatcgaggttgctttttcgaggcaagcgagtataaacatttatccaatgcaattgtcaatgctgttattgagctcgatgatgctgagaatttagtaaaaatggactcgctccagatcaccaatcccaggtttcaggtattgaaaagaattggcaaaatcacatcatcccatggttattgttagtcctttaacttcagcatgggtataatcggttagaactaattacatttttttcctttctttgtttgcagagagccgggtcgaggtaccgtgcatga</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0582000, RefSeq:Os04g0582000