Os04g0583700

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Revision as of 11:24, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0583700| Description = Pleckstrin homology-type domain containing protein| Version = NM_001060200.2 GI:297603247 GeneID:4336778| Length = 5...")
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Gene Name

Os04g0583700

Description

Pleckstrin homology-type domain containing protein

Version

NM_001060200.2 GI:297603247 GeneID:4336778

Length

5341 bp

Definition

Oryza sativa Japonica Group Os04g0583700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:29892438..29897778

Sequence Coding Region

29892438..29892485,29892835..29892921,29893497..29893586,29893864..29894058,29894373..29896397
,29896525..29896671,29896837..29897240,29897332..29897431,29897677..29897778

Expression

GEO Profiles:Os04g0583700

Genome Context

<gbrowseImage1> name=NC_008397:29892438..29897778 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:29892438..29897778 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgggagttttgatgggaggatgccaacaagaggagttgagcaggccattgttgctctgaagaagggagcacatctcctgaaatttggaaagagagggaagcccaaattctgcccattcaggctatcttcagatgagaaaacattagtctggtactcgaaggacagggaaaaacacctgagcttaaattccgtttccactgttgttcttgggcagaagactatctgcagagacagagatcaagctgaatgctggtttcttggtttgactgccttaacatcttctccttatagtccacttccattggctggctcaaagagcggtagacagataaacagttgcgcaatcagtccccgcagctatcttcagcgaaagtgcaggttatcagctgcccttgacacaccaaggcacacccaggtatacccatcatacgggagtcccaagatacagaaaaaaatctttggtggtaatctggatagctcagaagcattattttatccaaggcatccaacctcttgtgacattgattcttacatcgagaagcttaaccccaagatagcaactccagtaaaacatggtctgaaggacatcatggttgctaacagaagggcacagaatattacacatacacctaaactgaagacttttgaagggccccgtgtggcatgtaggttggattcacttaaggatgtttttctctggggtagtgttcttggcagcatgttaggcagtgaagacattccaaaatcccttccgagattggtaggctcagctaaaatgcttgatgtacaaagcattgcttgtggggagaatcatgcagccataatcactaagcaaggggaggtctatacctggggcagttatagcagtgggagattggaccaaaaagtaaatgtcaatgcctcctgtcccaaaatggtcgagtctcttgcctctgtacatgtcaaggcggttgcatttggatcaaagcacacgtgtgcaatcacggtttcaggcgaactttttgaatggggtgaaggagctcatagcttgggattgatgaatgactggtatggaaggaaccaatggtttccacataaatttttgggtcctatggacaatatttctgtgtcaaaaattgcttgtggtgagtggcacacagctattataacatcttctggccagttattcacatacggtgacggaacatttggtgttcttgggcatggagatactcaaggagttgctcggccaaaagaagtagagtccttaaaaggatcaagagtgaaatcggtagcatgtggtccatggcacacggctgccatcgtggaagtaatgagcagtttcaagggtaatgctccaagtggtaagctcttcacctggggtgatgcggatagaggaaagttgggtcatgctgacagaaaaatgaagcttctaccaacatgtgttgattcacttactgcttatgatcttattcaggtatcctgtgggacagcagtaactgtggtacttactgttactggaatggtatttactattggaagttctaggcatgggcaacttgggaaccccaaagcagatggtgaatctatttgcagtgttgaagggccacttaaaactgagtttgtcagagagatatcatcggggtcttcgcatgtagcggtgttgactatgagtgggaaggttttcacatggggtaaaggtgcggaagggcaacttggtttaggcgattacagtaataggagctctccaactttagtagaggcattagaaggcagggatgttgaaagtgtagtttgtgggttcaattttactgctgcgatctgtttgcacaagacgatgtcaatgaaggaccaatctgtatgcagcagttgccagatggtttttggttttactagaaaggagcacaactgttacaactgtggttccatgttctgcagttcctgcactagtaacaagatcacgatggcagcacttgcaccagacacaaacagaaggtaccgtgtttgcgatgcctgtttctatcagttgcagaaagttgtggattctagcaaagataagtctaggctaaagatcagcaaaggagaaatgtttaaattggaattaaaggcatacacacctaaattgtcacgcctattcaaggaagcaaacttttttgcagaaaagatggcttcagtacaaggtactaatcagagaaatgaggaacctgccactgcagtgcagacaaaaactgaaagatgggggcaagttgagtgccctgctctattcatatctgcacaagacagttttcaaactcagccggtatcaaatagtgaggggtgtgctatctctttttcacaaagaatgcatgattctgcggtgcttaagtctggcgtctctttacggtttactgacgctcaaagagaagaaatagaaatgatgcaaacagaacttcaaggacaagtgaaacaacttcattcacaggtagctgttctcacagagcagtgtcagcaaaaaagtgttatggttcagctatacaaacaaaaactggatgatacatggttagttgttagggatgaggccgcaaggtgcaaagctgccaaagatatcataaaggttctaactgatcagtgcaatgccttgtcagagaaactttcaattggtcagctgtcagaaaactccaagataacacctaatagcatcccaatgcaaccgacgaaaatagaattgcaagggaacaccggccggaatctggtcacacgcaaactcggccagctgaacaatacccaaaatcatggcagcagcatccaaacagaaaaggaatgtgtacctttgtcaaatgctgttgtgccagaagatgtaccgttcagtcaacagaatggggccaggaaatttagcagcgatgggtacaccacggaagcaccattggctgcccctccgactgatagtgtgactgaacaaattgagcatggtgtatatgtcacattttctacatcgtcctgtggaaagaaagacataaagcgcataagattcagccggaagcattttggtgagaaggaagctcagcattggtgggaacataacaagaccagggtatatgacaactacaaggttgaacaaatggcaacaccgtctataaaagcaaagcatccaatgggtagagctgatcagctgactttggatgtacaggctaggtttcagatcgatgagatcatggatgttggatctcgactgtaa</cdnaseq>

Protein Sequence

<aaseq>MAGSFDGRMPTRGVEQAIVALKKGAHLLKFGKRGKPKFCPFRLS SDEKTLVWYSKDREKHLSLNSVSTVVLGQKTICRDRDQAECWFLGLTALTSSPYSPLP LAGSKSGRQINSCAISPRSYLQRKCRLSAALDTPRHTQVYPSYGSPKIQKKIFGGNLD SSEALFYPRHPTSCDIDSYIEKLNPKIATPVKHGLKDIMVANRRAQNITHTPKLKTFE GPRVACRLDSLKDVFLWGSVLGSMLGSEDIPKSLPRLVGSAKMLDVQSIACGENHAAI ITKQGEVYTWGSYSSGRLDQKVNVNASCPKMVESLASVHVKAVAFGSKHTCAITVSGE LFEWGEGAHSLGLMNDWYGRNQWFPHKFLGPMDNISVSKIACGEWHTAIITSSGQLFT YGDGTFGVLGHGDTQGVARPKEVESLKGSRVKSVACGPWHTAAIVEVMSSFKGNAPSG KLFTWGDADRGKLGHADRKMKLLPTCVDSLTAYDLIQVSCGTAVTVVLTVTGMVFTIG SSRHGQLGNPKADGESICSVEGPLKTEFVREISSGSSHVAVLTMSGKVFTWGKGAEGQ LGLGDYSNRSSPTLVEALEGRDVESVVCGFNFTAAICLHKTMSMKDQSVCSSCQMVFG FTRKEHNCYNCGSMFCSSCTSNKITMAALAPDTNRRYRVCDACFYQLQKVVDSSKDKS RLKISKGEMFKLELKAYTPKLSRLFKEANFFAEKMASVQGTNQRNEEPATAVQTKTER WGQVECPALFISAQDSFQTQPVSNSEGCAISFSQRMHDSAVLKSGVSLRFTDAQREEI EMMQTELQGQVKQLHSQVAVLTEQCQQKSVMVQLYKQKLDDTWLVVRDEAARCKAAKD IIKVLTDQCNALSEKLSIGQLSENSKITPNSIPMQPTKIELQGNTGRNLVTRKLGQLN NTQNHGSSIQTEKECVPLSNAVVPEDVPFSQQNGARKFSSDGYTTEAPLAAPPTDSVT EQIEHGVYVTFSTSSCGKKDIKRIRFSRKHFGEKEAQHWWEHNKTRVYDNYKVEQMAT PSIKAKHPMGRADQLTLDVQARFQIDEIMDVGSRL</aaseq>

Gene Sequence

<dnaseqindica>1..48#398..484#1060..1149#1427..1621#1936..3960#4088..4234#4400..4803#4895..4994#5240..5341#atggctgggagttttgatgggaggatgccaacaagaggagttgagcaggtctgtaaaagatttcccctttcccccctcctttctagcctcttgagagtaattttgacgccatttattgatttattggatttctttcgattatttttggaattgcaagccttcaaatgtctcgcttttattgctaacccgttggactaccatcgctacatcttctgggggaaatgaaatgcattgttttcctattatattctctctcaacctcatggagtcagcgttcgtactgagaaaaactgctcggattaaatccgaatgatcacccatcaaatccatgttgccctgagagtggaggagttctgattttttttctttttccttttgttttgtttctgctatccaggccattgttgctctgaagaagggagcacatctcctgaaatttggaaagagagggaagcccaaattctgcccattcaggctatcttcagtgagtaattctgctgtaaatatgctcatattatccacgaatcctaatcaataatggtgggtttataaactggggagtggaaattcttaaagccatgggagtgctaatgacagaaatacgctgttattggaccattaggtactttgtcattcccctgagtccctataagatgcatccatggaaaatgtttcaagtacaatgtgcaagataatacgtaccttttaccactattacgaaaatagtgcttgcagctaaaaccagccgaagtatgcaatttgttagtgcctctgtggcctgtcacaaggaattcatgagttattttataagacaatctcagagaatttgatatactgttaatctgttatgaacaaaactggagtgctccatgttagtctatattaatgctaatatgttggccagtaaataagttttggaccgatgggggtatttgtccttaccttttggaataccaataatctgttaccacatagaattttgtacctgcagcttttatgtcatgcgaaaggatttcttctctttgctgtcatgccaaaggatttctttcctctttgcaggatgagaaaacattagtctggtactcgaaggacagggaaaaacacctgagcttaaattccgtttccactgttgttcttgggcagaagactgtaagcaattcattatgccctgattaagttatgatgcttgtcccttcgtcacatagcaatacaatattctaaggatttcagaactttacagatgaattttctgcgtcatcgctggccagagaaggaatcacaatccttgtcactcgtatacaaaaacggcgagtgctcaatagacttggtactcctcttactagatcttaaatcagttagagctgcaatcttatagtatatgttttccctactcataccacatgttttgaaaatttcgttggcccagatctgcagagacagagatcaagctgaatgctggtttcttggtttgactgccttaacatcttctccttatagtccacttccattggctggctcaaagagcggtagacagataaacagttgcgcaatcagtccccgcagctatcttcagcgaaagtgcaggttatcagctgcccttgacacaccaaggcacacccaggttagttctgcagcaaaccatatttggttctgtttttgtcgagtaatatgaatttcagattcataacatggccaaataacaaaagcttaagattctactgatatgtatgtcccagctctcaactgcaagggtattgaatgagatccacatataaattattatttgactttgaattaaactgtacaggcatatactttaacaaggggtgtcattttttttatgttgcttatattcttaagtagacctgcattgctacccaaatgttatatgtcatcaaagagttgattgttccttcaatgaatttcttcttgaaggtatacccatcatacgggagtcccaagatacagaaaaaaatctttggtggtaatctggatagctcagaagcattattttatccaaggcatccaacctcttgtgacattgattcttacatcgagaagcttaaccccaagatagcaactccagtaaaacatggtctgaaggacatcatggttgctaacagaagggcacagaatattacacatacacctaaactgaagacttttgaagggccccgtgtggcatgtaggttggattcacttaaggatgtttttctctggggtagtgttcttggcagcatgttaggcagtgaagacattccaaaatcccttccgagattggtaggctcagctaaaatgcttgatgtacaaagcattgcttgtggggagaatcatgcagccataatcactaagcaaggggaggtctatacctggggcagttatagcagtgggagattggaccaaaaagtaaatgtcaatgcctcctgtcccaaaatggtcgagtctcttgcctctgtacatgtcaaggcggttgcatttggatcaaagcacacgtgtgcaatcacggtttcaggcgaactttttgaatggggtgaaggagctcatagcttgggattgatgaatgactggtatggaaggaaccaatggtttccacataaatttttgggtcctatggacaatatttctgtgtcaaaaattgcttgtggtgagtggcacacagctattataacatcttctggccagttattcacatacggtgacggaacatttggtgttcttgggcatggagatactcaaggagttgctcggccaaaagaagtagagtccttaaaaggatcaagagtgaaatcggtagcatgtggtccatggcacacggctgccatcgtggaagtaatgagcagtttcaagggtaatgctccaagtggtaagctcttcacctggggtgatgcggatagaggaaagttgggtcatgctgacagaaaaatgaagcttctaccaacatgtgttgattcacttactgcttatgatcttattcaggtatcctgtgggacagcagtaactgtggtacttactgttactggaatggtatttactattggaagttctaggcatgggcaacttgggaaccccaaagcagatggtgaatctatttgcagtgttgaagggccacttaaaactgagtttgtcagagagatatcatcggggtcttcgcatgtagcggtgttgactatgagtgggaaggttttcacatggggtaaaggtgcggaagggcaacttggtttaggcgattacagtaataggagctctccaactttagtagaggcattagaaggcagggatgttgaaagtgtagtttgtgggttcaattttactgctgcgatctgtttgcacaagacgatgtcaatgaaggaccaatctgtatgcagcagttgccagatggtttttggttttactagaaaggagcacaactgttacaactgtggttccatgttctgcagttcctgcactagtaacaagatcacgatggcagcacttgcaccagacacaaacagaaggtaccgtgtttgcgatgcctgtttctatcagttgcagaaagttgtggattctagcaaagataagtctaggctaaagatcagcaaaggagaaatgtttaaattggaattaaaggcatacacacctaaattgtcacgcctattcaaggaagcaaacttttttgcagaaaagatggcttcagtacaaggtactaatcagagaaatgaggaacctgccactgcagtgcagacaaaaactgaaagatgggggcaagttgagtgccctgctctattcatatctgcacaagacagttttcaaactcagccggtatcaaatagtgaggggtgtgctatctctttttcacaaagaatgcatgattctgcggtgcttaagtctggcgtctctttacggtttactgacgctcaaagagaagaaatagaaatgatgcaaacagaacttcaaggacaagtgaaacaacttcattcacaggtattttttttccgggaatacgcataagatttgcgtatcatagtattaagcttggagggtaattcatttataatatccattaccaaatttggtaactgcaaaaattacatatttattgttcaagcaggtagctgttctcacagagcagtgtcagcaaaaaagtgttatggttcagctatacaaacaaaaactggatgatacatggttagttgttagggatgaggccgcaaggtgcaaagctgccaaagatatcataaaggttctaactgatcaggtatgagctcgacgtaatctcattgtagagtactgctggtacctttttcttgagcaacaaagaactaatgtaatacagcattaccttatatcgtggggggctggggcgttctgaacttttggttgatatatgacctattaacttggtgtattgcgaaatgtgcagtgcaatgccttgtcagagaaactttcaattggtcagctgtcagaaaactccaagataacacctaatagcatcccaatgcaaccgacgaaaatagaattgcaagggaacaccggccggaatctggtcacacgcaaactcggccagctgaacaatacccaaaatcatggcagcagcatccaaacagaaaaggaatgtgtacctttgtcaaatgctgttgtgccagaagatgtaccgttcagtcaacagaatggggccaggaaatttagcagcgatgggtacaccacggaagcaccattggctgcccctccgactgatagtgtgactgaacaaattgagcatggtgtatatgtcacattttctacatcgtcctgtggaaagaaagacataaagcgcataagattcaggtgaaccctctaaggccatattagttttatatgctgaattgctgattgtctgttcttttacttgacataacctgaattcttggctgtgcagccggaagcattttggtgagaaggaagctcagcattggtgggaacataacaagaccagggtatatgacaactacaaggttgaacaaatggcaacaccgtctgtaactttgagctgctcttcaacacggtgaccagcaaaagattgtacaggggtaatcagttctgccaatagttggagagattgatcagttctgccaatgttaatagagcaaactgaaatgcgtagtcgtcagcctaaaaacaacatgacatgaagcagatgaaattgtgtaagcaacctagagaaatataaccactattcataattttcataatttgcttcttagcatgaccagtaatgctgtagataaaagcaaagcatccaatgggtagagctgatcagctgactttggatgtacaggctaggtttcagatcgatgagatcatggatgttggatctcgactgtaa</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0583700, RefSeq:Os04g0583700