Os04g0584500

From RiceWiki
Revision as of 11:24, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0584500| Description = Armadillo-like helical domain containing protein| Version = NM_001187141.1 GI:297723412 GeneID:9268164| Length = 507...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0584500

Description

Armadillo-like helical domain containing protein

Version

NM_001187141.1 GI:297723412 GeneID:9268164

Length

5076 bp

Definition

Oryza sativa Japonica Group Os04g0584500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:29920887..29925962

Sequence Coding Region

29923222..29923434,29924731..29924967,29925053..29925365,29925508..29925617

Expression

GEO Profiles:Os04g0584500

Genome Context

<gbrowseImage1> name=NC_008397:29920887..29925962 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:29920887..29925962 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcatccaaatatgtcttgtatgtacatgcgcttccatctcacaaaatatttcaattgtcacagaagggaaatagttgaattgttcctacgtggattgcgcacagagttgacaatggagactatgaatctactactcgagcatctccgacgctcgccaaacgaagaacaagctctgggtgctgttctactcctgcattttgatcatgcattggtggagccacacagagatagcgtatacagagaagaggctgccaagatcatcacacattctctgagatgctccctgtctgaagaaaatgtcgttgccaacatcaggaaagcactgctgctgctgggagggcatttctccttctcgggcgacctccttgcagaggaccggatgctgaaacaagccggcttcgtcgacggctcacgtgtcacgcgtgccgattctgacgctgccgtacaggacaagggaagagacgaagacgaggtgtggctgagggatgtgaccgcggcgctactcggcagcgggaggaggccgttcctggaggcgctgtccatgtgcatgagctctcccaaccacgacctggcggccgtgtgcctgacgacggctgcgtggctgagccggtcgctcgcgtcgatcgacgccgccgacgtgcagctcgccgcgttctcggccctcatcccgcggctgaagcagcgcctcgccggcgaccggtcgcaggctcagcatcgggtcctcgcgtccgtgacactgtacaacttcagcaagatcccagactgcagggccttgctgatgctgctggctgacggccttcgcgatcacctggtcgagctcgcggagctgacatggacggccggtcaactgatcaccgagctccaagagtga</cdnaseq>

Protein Sequence

<aaseq>MHPNMSCMYMRFHLTKYFNCHRREIVELFLRGLRTELTMETMNL LLEHLRRSPNEEQALGAVLLLHFDHALVEPHRDSVYREEAAKIITHSLRCSLSEENVV ANIRKALLLLGGHFSFSGDLLAEDRMLKQAGFVDGSRVTRADSDAAVQDKGRDEDEVW LRDVTAALLGSGRRPFLEALSMCMSSPNHDLAAVCLTTAAWLSRSLASIDAADVQLAA FSALIPRLKQRLAGDRSQAQHRVLASVTLYNFSKIPDCRALLMLLADGLRDHLVELAE LTWTAGQLITELQE</aaseq>

Gene Sequence

<dnaseqindica>2336..2548#3845..4081#4167..4479#4622..4731#acggcccgtcaccatgcaaaccacaacgaacagtgatgtgccactagcagcagagacctgtcatccacacgcccccgccggcgacaatggcgccgccgccgtcgtcattgcttcgcgacctcctcgccgctgatggcttcagaaaccgtcgcaagccgcctgacagtaaccctccggccgccccaaggaccacgagcatgcccctccagcaccggcggccgagtaggccagcacggtcgcagtccgacgtcctcacccgcagccgcctcagagaaacaaacaacgtcggtactagcgatggcgacggagtcgacgccggcgaggagcagcggaccgccacacggaggtcatcggcgtcgctgatgagcgcgaggagctacaacaacaacaaggacagcggcggcggcgccatgaggggcggctcagctgccgcggtaccggctctcgacgagtccgtgctcaccgcgttgatctccctggtcgcgggagccgtgaagcggttcgtcagggacgagggcttccgcgcgtcgctccgcggcgggtgcatgtcgtgcctcggcggcgagtccaaccaccgggcggtcctggacctccgcgtgatcgtgcacaccgtcgagagggccgcgagcgaggggctcgacgacccgcgcgacctgaagcgcgcgtcgctcaggctgcacgccatggcgtccctcgacgcgaaggaagcggacgcggtgagcgcggccggcgtgccctaccagcgcctcgccgcgtgcgcgcacctgtacatgtccgtcatctccaagctccaggagaaggaccactcctccgcggtgcacgtgctggaggccttctgcttggcgccgcacgaggcccgcacatccctgcttcccgcgctctgggacaggctcttccgctcgggcctctcgcacctcaaagcgtggcgtgaccgcgagtcggcgaccgcggcgagctcggatacgagggtgaaggacgtggagaagatgttcgtagaggcagtggacgatggcacacgcgcgctcgcatgctactacagagattggcttctggggcgcagccaagccatgtctctcccggttgttcctgctcctcccagcaccgttcttgccagcgcgctgaggttctcgacgtcgacgtcctatgacattggctcggatgtcgcttgtagctccgggagttacagtccagctgtaaagtttgcgctcgacgagactccatcacaatatgatcgagagatcgaagaggaagaagaagcagaggtggacgagaagacagcagatgcagaaagcgtgttccatgagtgcgatggcactgaaccgaagagctacactcactcacttcagacagaagaaaacgagctaatgcctgacaagctagccaacgaggcatctgaacgaaaggtcagcattttttttttctgtggaattaacttttcttgcatgcgcaattgatcatgcgcgggaaaaagatcaaaattctgatggtttacgcctcaaaatcttagagtgaagatgaacggagcagacaaccagatgagtcaacgagttatgtgccaatttctgatatcacggctattgaccttcctacactcgagttctggtgcgaacctctctctgcattttccaatcttttcatgcatgtcatactgatctttgcataatttcgtgtaagcttctcagtgaagggcctgatctccagagtgacacagatggcagtcaaatatccatttttgccaccattcctagtgatttcctctgtccactgacgaggcagatcttcaaccgtccggtgacaatcgagacaggtcagacgttcgagcggcatgctatagttcagtggttcgataaaggcatcagaatgtgcccaattacaggtcaagaacttgaaagcctgtcgattccagacataaaccgtgtgttaaaacgcttgatcgataactggaagtccgaacactgcaaaactctgaactctgaaagtacatgtcctgaaaaggagttaactgcaacattcgtagagaatgtcctttcttctgaatgcgagacgtctgaaaaacttgagaaggcaaggcgtcttatggcaatcggtggcatagactttcttctgcataaatttcatggaggaggagaagatgagaaggcacaagcagctgagctccttttgctctgcatcagggcagaaggaagctgcagaaactacatggccataaggatttgtaactcaagtgttgttcagcttctccacagtgaggtgatttcagcaaggagttctgcagttcgtctgcttgttgaactgctctgcctgaaaaggttctgtctcctgttcgtaacaccaaatgcatccaaatatgtcttgtatgtacatgcgcttccatctcacaaaatatttcaattgtcacagaagggaaatagttgaattgttcctacgtggattgcgcacagagttgacaatggagactatgaatctactactcgagcatctccgacgctcgccaaacgaagaacaagctctgggtgctgttctactcctgcattttgatcatgcattggtatgctgctttagtccatcttctgttgctcctaattgcatttgaagtgctactaacataggatagaataccaaaaactaaaaacttttagcggaattaaaaattaccttcaaaccttatggagatcggtctgatcggcatgtatgcacctgtctgattgtgcttgttccaccagtttgactggtgtagaagattcggcctgatcgctcaccgagtcaccgtcatcggtctaaccgttgtgtactcttcggtgtaaccgttgaacctaagcaaaaacacaaatcgaaaacatcttaaaagtagatcaactttattacttctaattatgtttataaagtgcaataataatatttttctctaaaaatttgactactatttaggttaaacccaaattttctctcagctaaactctcacgaaaatcgaaactgataggtctcaacccctcttctattcatacccttaggtggttgcacagaaaccatgaatccaacttgtacaaatgtcttaatccactaagaatccttcccgtacaagtatccaacttatctcattaaaattcaaactccaatcttcccaaatttgaacaccccacaaatctgactccgctttccatacacacaatccctctcgtatgctttatggaatcttcattaaccacgtacattgttttttagcttaagcgtccgcatgatctcccaattgtctagacatcaacttctcccaagttaactctagacccatcgccggcaacactctcccaaggcattaggacacacatacacatgaatcaaacaagaaacaatatctgagcactatttttttccccaatttgacttcacagtagcacacaatagtattacacatatataaaaatcatctagaagttataaacatgataaaatcacaagtattcgaagaaacagccgaaaccgattccgagcaggagccagccggtcggatcattggggcggccgatctgaccacacactacacgctggtctgaccggcctactccacccagtctgaccagtcccacacagtcagtacaacttcaccaataaaccaccaattatctcacaaagtcaattatttatcataataaaataataatcaaaacactctgatttcacactaaccacctaaatttcttgcctactttctctgcgtgatctatgatattgctaaattcctaccctcggaggaaaaatgtctctgaataaataaccaagactgttacacaattcaactatgacaaagcaatatactgaacctgtagtctgtaaataatctggcaggtggagccacacagagatagcgtatacagagaagaggctgccaagatcatcacacattctctgagatgctccctgtctgaagaaaatgtcgttgccaacatcaggaaagcactgctgctgctgggagggcatttctccttctcgggcgacctccttgcagaggaccggatgctgaaacaagccggcttcgtcgacggctcacgtgtcacgcgtgccgattctgacgctgccgtacaggtaatgtatcgcacagatacaaacaataatatatccaactaaaaattttccaagttgctcagagaaattcctctgcgtcgatcaggacaagggaagagacgaagacgaggtgtggctgagggatgtgaccgcggcgctactcggcagcgggaggaggccgttcctggaggcgctgtccatgtgcatgagctctcccaaccacgacctggcggccgtgtgcctgacgacggctgcgtggctgagccggtcgctcgcgtcgatcgacgccgccgacgtgcagctcgccgcgttctcggccctcatcccgcggctgaagcagcgcctcgccggcgaccggtcgcaggctcagcatcgggtcctcgcgtccgtgacactgtacaacttcagcaagatcccaggtaatgatgcgaaaaaacttagccgcaccgggacggcatggagtataatccgtctgcgacgcgagagaagtcaatgcctgcattgattatgaacacgagaaatccagttaggcggctaatgatggatttggattgcgcgcagactgcagggccttgctgatgctgctggctgacggccttcgcgatcacctggtcgagctcgcggagctgacatggacggccggtcaactgatcaccgagctccaagagtgacgttaacctccgccacgacgcccagcgtacgctacatgcaagtcgccggagcgcctctcgtgttcgtggaagattcagcggatggagcccgctgattttcttgcccccttcagagttcagaatcgtctcagctccaaacagttatcggacagagacggcacgctatgtaaatgttgatgcgtacggtagattatactataccttgtttagtcgttttctctcttcttgggtaacatattcgacgagccggccgctgtgaatataatttgattatgcctgacggagtccttgacgtttgtacttctgaatatttttggggggcaaaatccagtctttcaattggtt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0584500, RefSeq:Os04g0584500