Os04g0585100

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Revision as of 11:24, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0585100| Description = Zinc finger, DHHC-type domain containing protein| Version = NM_001060210.1 GI:115460149 GeneID:4336788| Length = 635...")
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Gene Name

Os04g0585100

Description

Zinc finger, DHHC-type domain containing protein

Version

NM_001060210.1 GI:115460149 GeneID:4336788

Length

6351 bp

Definition

Oryza sativa Japonica Group Os04g0585100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:29955407..29961757

Sequence Coding Region

29955559..29956404,29956723..29956914,29957007..29957087,29957617..29957745,29957896..29957967
,29958078..29958146,29959126..29959325,29959418..29959520,29959606..29959719
,29961547..29961591

Expression

GEO Profiles:Os04g0585100

Genome Context

<gbrowseImage1> name=NC_008397:29955407..29961757 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:29955407..29961757 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcggcgtcacgggtggcagctccccgcccacaccctgcaggtggtagctataacggtgttcttcttgttgtgtatagaattctatgctttcttttcaccatttcttgggaaggacttgtatcaatttatcgcaataggtgtttatagttttctggccttatcagtactgattctatatgtaagatgtactgctattgatcctgctgaccctggaatcatgattactgtcaacggtgctctaacctataagtcagaagcaaaattagacacacaagacgaaacgggcaaatcagaatcgagaacctatgaggatgtccaaaagcacaaatcatgtttaggagctggttgtttgtgttgtgctatatttgtgaaagaggattgtcgcaaagatgacgaagcttaccaacaagaagattatgatgaagaggcactcttttgcaccctttgcaatgcagaggtgcggaaaaatagtaaacattgtcggagttgtgacaaatgtgttgatggttttgatcatcattgccggtggctgaacaattgtgttggaagaaaaaactatgtcacatttctgtgccttatggctgtgagccttgcttggcttgctgttgagtccggagttggtattgctgtttttgtccgttgcttcactgacaaagcagctattgaagatcagataggggaaaagctggggtatggtctttcacgagcactctttgcagctattggggccctgggtacagctctttcaatgcttgcttcagtgccacttggggagctattcttcttccatatgatattaatccggaagggcatcacaacttatgaatatgttgtggcaatgagggctcagagtgaacctcctggtccttctgtcaatgatgaacaacaaagcctgccatcatctcccatgagttctgcaccgactgctttcagtgggagctcatttgcacggcactacaaaggtgcgtggtgcactccaccacgcatatttattgaccaggatgaaatcatcccacacctgcaacctggacgagtgccttcaactgttgatcctgatagcatgaacccgactgaaagagccaaacattatcctaaacgtcccgtgcgcattagcgcatggaagcttgcaaaactggattcaaacgaggccatgaaagcagcagcaagagccagagcctcttcatctgtgcttaaaccggtcaatacccgtgcccaatacgaggcagaccggtgttccagtgataataccagctgcagaagcagtgtcatgagtgttgatattggaaaccacatcaacagtcggtctgtccggaattctcaatacaagtcctcttatccacccagcagagcaagtgcagatgacattgagctgtatccccagacaccaagtagctttcaaagcaactctcagactccaacaccgatttcagagcaccatcctgcaaagcatttcaatccaatttatcagacatcagcaaacaggtctccattctcagcagtagcaagtggtgtcaatgaagcgtctgtctcagatatcagcacaaggaggtttggtgcatcgaacgcagacagatcttctcgttcatctgtttactgggatcaggaagctggccgcttcgtctcttcccaggcaaaccatggatccagctctcgtttgccccgtagtgaccttctttacactggacagtctatattctttggtggacctctgatgacagatcctgcaacaagaagtttcagagatcctggcggttcgagccaacgcgctggtgcttctcggccgcatcagctccccgtgttcgttcctagtgatccccagaaagatcgtttctctaggctaccttga</cdnaseq>

Protein Sequence

<aaseq>MARRHGWQLPAHTLQVVAITVFFLLCIEFYAFFSPFLGKDLYQF IAIGVYSFLALSVLILYVRCTAIDPADPGIMITVNGALTYKSEAKLDTQDETGKSESR TYEDVQKHKSCLGAGCLCCAIFVKEDCRKDDEAYQQEDYDEEALFCTLCNAEVRKNSK HCRSCDKCVDGFDHHCRWLNNCVGRKNYVTFLCLMAVSLAWLAVESGVGIAVFVRCFT DKAAIEDQIGEKLGYGLSRALFAAIGALGTALSMLASVPLGELFFFHMILIRKGITTY EYVVAMRAQSEPPGPSVNDEQQSLPSSPMSSAPTAFSGSSFARHYKGAWCTPPRIFID QDEIIPHLQPGRVPSTVDPDSMNPTERAKHYPKRPVRISAWKLAKLDSNEAMKAAARA RASSSVLKPVNTRAQYEADRCSSDNTSCRSSVMSVDIGNHINSRSVRNSQYKSSYPPS RASADDIELYPQTPSSFQSNSQTPTPISEHHPAKHFNPIYQTSANRSPFSAVASGVNE ASVSDISTRRFGASNADRSSRSSVYWDQEAGRFVSSQANHGSSSRLPRSDLLYTGQSI FFGGPLMTDPATRSFRDPGGSSQRAGASRPHQLPVFVPSDPQKDRFSRLP</aaseq>

Gene Sequence

<dnaseqindica>5354..6199#4844..5035#4671..4751#4013..4141#3791..3862#3612..3680#2433..2632#2238..2340#2039..2152#167..211#aagtatccactcctctcctctctcgcctgactggcacaggcaccagcgccgagagggggagaggccagaggaggagaagccgtacgtacgggggcgctcgctagggtttgccacgccgcgccgctgaccccgcgaggacgtccctaccgccgacgacgccgccgccatggcgcggcgtcacgggtggcagctccccgcccacaccctgcaggtgcgctcgctgcttgcgcgccgtctcgtctcccctcctgttgctgtctgtgctcgcgcgcgcaatgtggctacggatctcgctgcgtctccattattccgcggtctgacgagcggagctcgctgttgctggtgctattgcttacgcgtctactactctactactagtagtatgttttaggttccaatgagtcagtatgcgttgtttgatttgatacgatgtttttactctcttgtgtagtctctactccgtaggtatgtgtgtgtttgatgcaattggttgcttcgcctgaatattgtttatgcttctaggcgagttcactctatagtctatgtctagaaccacactagtattccagtacgaggatttgatttgcttctgctgctgtgacacgaaattgtacgtcgatttgattttcttaatggttcccctgatggcatatgctatctgaattttaggcggatgctacgttcctgatcccgtgcgttgtagtatatgtggtgtctgatttgatctggcatgtagctttgggcataaaagtggtactttttgttcgttttctgttggtctcgtctgctctttctttctctgatgtgatgtgcgaccctggacttgggggctcccctaggccctaactctccttttgtcttcttcctatttgcactatggattctctggtttgagtttttcttttttttgagggcctcctatttgatttctttctcacacctgagttaaacattaggatatctatggattcgtgatttcctgttgatttttcagatgcagaattttagttactccaacctttttgatgttatccgtttagagtaggagtagaaaagatgcatccgtgtttgaaatgatggagtgctcagttcggtgccagtggctttgccattctggacaacgttcattttttttttccttttctttgtttttatatttcttagtatctctttgttgcatatcgttttatgctagagccaactttcgtttctatcatgaaattcttattacccggcaaaaatcattaaattcttattgtcaacaattagcactgcttcaactaagttatactagtgaaatcaaattagttaccttcaactagagactaaggataataatccgaatgacgttttagcgtcatgttggtggtctgttgggtttcaaaaaaatgttggtggtctgtcctattatgttgttagtgcttttacctttttatcttacggtcccagttatgcactttttcagctctgtttaatgtgtcatgtgcaagaatttatctggattcattgaagaactgtagtttacctgtgtaactgcagtatcccgctaaaatttagatcaacttgtgtgcattcttagtcatggactcatggctctggtctatgttgttttatctgcactacctcactaagtttacatgttttggagatcaaacaagggaagaggctataaactcttggcaaataaagcttaatctttcataaaagcctgtaagatctgagcatgcatgatcgtcttgtgtaattttgttttaagtttttcgcctataaacctcatactcaaagctcttgaaatattcaatgtttgtaagaatcccctaggatcagtaatgttcagccttccttttaactagaaagatggtgtatatatggggatcttggactcttagtcttctactcttctttatctgctgaatttgtagcctcttaattagatcctgtacttcctttcatgtgctgatgtcgatgcatgctatcccatgtttacctcttattaaagcaagtgattgaatattttttttctttttcttttttgcaggtggtagctataacggtgttcttcttgttgtgtatagaattctatgctttcttttcaccatttcttgggaaggacttgtatcaatttatcgcaataggtgtttatagttttctggtaatgttcttcctgttcacgcattgaattttggagtagtagattttgtttgacaagcgtttgatgttcatttctggcatttcaggccttatcagtactgattctatatgtaagatgtactgctattgatcctgctgaccctggaatcatgattactgtcaacggtgctctaacctataagtcagaaggtatctgctcatacttggaactttgatgtaattcatgtagtagtaggcacatgttatactaatgtagcaaatcatcttgttttgctcaaaagcaaaattagacacacaagacgaaacgggcaaatcagaatcgagaacctatgaggatgtccaaaagcacaaatcatgtttaggagctggttgtttgtgttgtgctatatttgtgaaagaggattgtcgcaaagatgacgaagcttaccaacaagaagattatgatgaagaggcactcttttgcaccctttgcaatgcagaggtacttatccacagccccatccttagcgtgtgcataccataccatttttaagacctcgtattcattttctctgcttttgcaacatatatggacttggtattttgaaaaacataattgaactgtaaatacttacctgctgcatccattgattcaagtttacatgtctgtttaacacctgtatatttgacctgaacatagtggtacaaggctattattcatggttgctttacaacagacgcacataacaaagtcttatcgttcatttgtatcacttcgaattatatttgcatgaatgtggcctaaccagagttataatgtttcaagacttctctaacagtcaacaggtgctatgtaagaggcaaaacttttgaaaaagcttttcattacaagttcttcgaatcaatttttgcctatagacacacagaatttagaattcttatgacaatacagggacatagatgcccgggaaaatatgtggtggaaacttggaaactaccgttggatcgaaaaatggacattcgatattcatccacgtcatcacaagtaaacagtaaaatttttactcatgatgatgtggatgaatctcggacgtccatttttcgatccaacggcagtttgcaagtttgcactacatatgtggtttccaccacatattttccctggatgcccagatcaaacagaattaattagcatggtttaacagctaataaagaaaactcgtactaaggatgattaggaatttaggatccaagtatgaaataactaaaaaaaaaatcccctgttgagacattatatcagttattgttagtgccatcaacattttgtgcttcttaactattttggtgcttctgaaatattagtggatcgtgagtagagaccatttaacatatttgtttacagcagtttttattcactgtatatgctaataatccaaagttttggttcatactcagtaccctttccttgtacattgatataggtgcggaaaaatagtaaacattgtcggagttgtgacaaatgtgttgatggttttgatcatcattgccgggtaggtttatgttaaagcttctgtttcataaacttcacttgtccttttgccctttcactttagtttgttgacatggctattctgatgttgttttggtgtttctgatgcagtggctgaacaattgtgttggaagaaaaaactatgtcacatttctgtgccttatggctgtgagccttgcttgggtatgtaaaataatcaaaacaatattaatatttctatcaatgtttatattcttttaactgctgagaaacttgtgtcttgtggatttggtgctctggaagcaatttttcatgtttctaattgtggttgttcataatcttaaatgcataaagcttgctgttgagtccggagttggtattgctgtttttgtccgttgcttcactgacaaagcagctattgaagatcagataggggaaaagctggggtatggtctttcacgagcactctttgcagctattggggtaagtgtggctctttaactttgaggcgtatggttgcagtaattttcatgtgtatctagatttgagcatgactacttagaaaggtagtattctgtgtaatattgttgttgtgctgaaataagatggagtaacttagtatgaataggactagtcttgttacagggcaaataaatagtatgccacagcagctgtgacctgtgagtaaacatttccacccaaatgcaagctgcagctgctacatatcatagtggaagattttgctcccagaaaactatttataataaactagttagtgttcaagtctggctcttatacaagaatagaagtgccttctcaaccctgcacacatgcgctaagaatagagcaaggatatcatcactgaagaatgtgacaattcatttgcacctgttcatagttagaactatctctattggggattaccttttgtgcacaatatatatcttttgaacaaagtgtaccacattgattaagaatgtaaaggattaactaaaatcatttctgtcttcaggccctgggtacagctctttcaatgcttgcttcagtgccacttggggagctattcttcttccatatgatattaatccggaaggttggtgattttactctcctttgtgaagctttagtcacatttttctccattgatggaatatgatatggttttgttgcgccacttttttgcagggcatcacaacttatgaatatgttgtggcaatgagggctcagagtgaacctcctggtccttctgtcaatgatgaacaacaaagcctgccatcatctcccatgagttctgcaccgactgctttcagtgggagctcatttgcacggcactacaaaggtgcgtggtgcactccaccacgcatatttattgaccaggtatgaattctgtccagtattacttctagttcatgtcaacttttaaggtagttgatcacttaattgtccagtgtttgtgttctatcatgggaagcacagcaattctctatgtagtgttttttaatgaacttatgcatttaacaccaatgaaccttattagaaacaagcacagtttttttagttaatgtatcagaactgttgcttaaaagccatcctctgcgcccatcatattcgtccttattttaaggttcaatttatctattaccttttgagaaaaaaaatcctgatatgtttgattctgtccgcgtcacaccacaggatgaaatcatcccacacctgcaacctggacgagtgccttcaactgttgatcctgatagcatgaacccgactgaaagagccaaacattatcctaaacgtcccgtgcgcattagcgcatggaagcttgcaaaactggattcaaacgaggccatgaaagcagcagcaagagccagagcctcttcatctgtgcttaaaccggtcaatacccgtgcccaatacgaggcagaccggtgttccagtgataataccagctgcagaagcagtgtcatgagtgttgatattggaaaccacatcaacagtcggtctgtccggaattctcaatacaagtcctcttatccacccagcagagcaagtgcagatgacattgagctgtatccccagacaccaagtagctttcaaagcaactctcagactccaacaccgatttcagagcaccatcctgcaaagcatttcaatccaatttatcagacatcagcaaacaggtctccattctcagcagtagcaagtggtgtcaatgaagcgtctgtctcagatatcagcacaaggaggtttggtgcatcgaacgcagacagatcttctcgttcatctgtttactgggatcaggaagctggccgcttcgtctcttcccaggcaaaccatggatccagctctcgtttgccccgtagtgaccttctttacactggacagtctatattctttggtggacctctgatgacagatcctgcaacaagaagtttcagagatcctggcggttcgagccaacgcgctggtgcttctcggccgcatcagctccccgtgttcgttcctagtgatccccagaaagatcgtttctctaggctaccttgaaataaactcttttttggagtagtcttctgaaacaattgttgctctgttggtttattcaatgtatagttcttacatcagatcgatcgtaggctatgattttctttttgatattcaggtggaaactgagattaatttaggtattgatgattttt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0585100, RefSeq:Os04g0585100