Os04g0597800

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Revision as of 11:25, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0597800| Description = TGF-beta receptor, type I/II extracellular region family protein| Version = NM_001060274.1 GI:115460277 GeneID:433685...")
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Gene Name

Os04g0597800

Description

TGF-beta receptor, type I/II extracellular region family protein

Version

NM_001060274.1 GI:115460277 GeneID:4336854

Length

3985 bp

Definition

Oryza sativa Japonica Group Os04g0597800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:30559968..30563952

Sequence Coding Region

30560197..30560247,30560419..30560481,30562029..30562337,30562428..30563786

Expression

GEO Profiles:Os04g0597800

Genome Context

<gbrowseImage1> name=NC_008397:30559968..30563952 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:30559968..30563952 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgccggcgaaatcatcgtggcccagccatcgccgcggctgtataagagtttgactttccggaggatcgcgacgaaggaaaggaccattccccaggatgaagagatgaagattcgcagcccgaggttccaggacgaaagcctcactgcgccatttatactagacaagaaagcgaggagcaaagcgccaacagtggtcctaggattcgagtgcttggagagcacagcatttaacggcattgccacgaacctggtggtgtacctggagactctcctgcacggcagcaatctcgcgagcgcgtccaatgtcacgacgtggttcgggacgagctacctcaccccggtgttcggcgccatcatcgccgacacgttctggggcaactacaacaccatcctcgtctccctcgtcttctatctccttggtatgatgctggtcaccttctcggcgttcctgccgaccaccgcgctgtgcaccgtggtgggctcgtcgtgccagcagccacttcttggcgcgcagaccatcgccttcctcgggctctacctcgtggcgttcggaagcggcggtgtgcgcgcggcgctgctgccgttcggcgcggaccagttcgacgatgacaacacggccgaccgcgagcgcaagatgtccttcttcagctggttctacatctgcgtcgacttcgggatgatcgtgtcgggccttttcatcgtgtggatccagcagaacgttagctggggacttggcttcggcatcgccacggcctgcatcgcgctcgccttcggcggcttcgtgctcgccacgcccatgtacaagcgccgcatgcccacaggcacgccgatcaagagcctcgcgcaggtcgtggttgccgcgtgccggaaggcaagactccgtgtccccgcggacactactcttctctacgaagtccatgacaagatcaaccagtcgaagatagcgcacaccgaccagttcggctttcttgacaaggccgcggtggtcatggagtccgacttggaagaggaatcgaacgacgtcgcggcggatgcctcgtggaggatctgcacggtgacgcaggtcgaggagctcaagatcctgctgcggctattgccgatatgggcgacgagtatcgtgctttcggcggcgtacgcgcagctgaacacgacgttcgtgcagcagggcgccgcgatgaacatgcggatcatgtcgttcaccatcccgcccgcgtcgatggtgtccttcgaggtgctctgcgtcctggcatgggttctcatgtacagctccgtgatcgtgcccatgctcaacagcttatccctggccaacggcgagccgtcgcagctgcagcggatgggcgcggggcggctgctcatggcgttcgcgatggccgtcgcggcgctggtggagatgatgcggctggacgcggcggggcgcggcgagtccctgagcatcgcgtggcagatgccgcagtacttcgcgctggccggcgcggaggtgttctgctacatcgcgcagctggagttcttctacagcgaggcgccggagtccatgaagagcatgtgcacgtccctggcgctgctcaccgtggcgctgggaagctacatgagctcattcatctacgccgtcgtgaacgcgttcaccgccgtggacgggcggcccgggtggatatcggacaacctcaacgaaggacacatggactacttcttctgggtcatggcggcgctgtgcacgctcaacttcgtcgtgtacagcgcgttcgcccggacctacagggtgaagctggtcgtgtcgtga</cdnaseq>

Protein Sequence

<aaseq>MDAGEIIVAQPSPRLYKSLTFRRIATKERTIPQDEEMKIRSPRF QDESLTAPFILDKKARSKAPTVVLGFECLESTAFNGIATNLVVYLETLLHGSNLASAS NVTTWFGTSYLTPVFGAIIADTFWGNYNTILVSLVFYLLGMMLVTFSAFLPTTALCTV VGSSCQQPLLGAQTIAFLGLYLVAFGSGGVRAALLPFGADQFDDDNTADRERKMSFFS WFYICVDFGMIVSGLFIVWIQQNVSWGLGFGIATACIALAFGGFVLATPMYKRRMPTG TPIKSLAQVVVAACRKARLRVPADTTLLYEVHDKINQSKIAHTDQFGFLDKAAVVMES DLEEESNDVAADASWRICTVTQVEELKILLRLLPIWATSIVLSAAYAQLNTTFVQQGA AMNMRIMSFTIPPASMVSFEVLCVLAWVLMYSSVIVPMLNSLSLANGEPSQLQRMGAG RLLMAFAMAVAALVEMMRLDAAGRGESLSIAWQMPQYFALAGAEVFCYIAQLEFFYSE APESMKSMCTSLALLTVALGSYMSSFIYAVVNAFTAVDGRPGWISDNLNEGHMDYFFW VMAALCTLNFVVYSAFARTYRVKLVVS</aaseq>

Gene Sequence

<dnaseqindica>230..280#452..514#2062..2370#2461..3819#ggggttggtgagttggtctgttggtggccggggcgcgggcgcgcttacctgttctccctcgcgtggagctctttgactacgcccgccagctgcgcgtgtgtataaccttgcttgcttgcctctcacagccgaagtcgcaggcgcagtcaggagctatcgggaaaacgggatttcccccagctttccaaggttcgcgggtcaatctcgcagtgatactccggcggcggcaatggacgccggcgaaatcatcgtggcccagccatcgccgcggctgtataaggtatgtgaaacttcatgagcgagctcgccgtcgacccaagcttagggagatatagggattgatattatcggtgcagcagtgcgtgattagttgtttagtttagcttgcttcttaatttgagggctttcatttggagtttataatctgattgtttggattgcttttgtgcagagtttgactttccggaggatcgcgacgaaggaaaggaccattccccaggatgaagagatgaaggtaagcacctcttgatcacgtttgaactcgtcctctgttgttaattagtcattaacttgcgtagttgtagtccgtagtaatagaaaaacttggcgggcggggtgcgatgtgtgatgatctgctgcaagaactgagaaatttttgcgtcaaaaaggaactgagaaatttttggataatggatcacataactcgtcttctaaactctaataaatggatgtatacgaccattttgtgcattcgttttagtaaaaaaagcagctacacattgttttcttgtttttgctagtactttaatatagtatacatgctatattgttggtttattacggattccatttttcaggtgtcctatggtaataattttcgcaagtgtttttttttgaattcatcactgcagacaacaagaaatatgatttaatggtcaaattgattaccctgcaaattgtgttgtgacaataaaatgatattctcaatttcaagaggccagcatgcaatttctactatcataaaatagtgaaattaattgaccgtatcaagaactgtacacaactgttaggtttttcaagttattgtactagaccgtatccacctgccagatttttgttctaaaagcgtaatttattttatattaagctattatcaatatctcgatgcaaatgtgtgttcttttttattaaaagattctttcactagggaaaaacgtccggccaatcaatttgtcccagcatagtcgccctatgggctatttttataggccttaggcagccgtacgccctgttgaaaaaaaaaaagactcccagctcaaacccagcccaaaacatctgttaatttggttttacatgtaaaatcattgggagcccgtagattcagaaacaaaggtctcaaattggatatttttcttaatttttatattatttcatattatttctaaaagattaaaaaataaattacagttttaaagttttgcaaaaatttactcctcccgccctaccgtagagcgatatatgtgacatggcaatccagggagggggtgccgtggcaattttgcataaatcgccctcccctaggacgatttattcttgagaaggagccatctataaaattgtcatgacgcaaaatttagtgatgcatcgggtgcgttatggcaattttacaaggctcccacccgaggagaaatcgccttcctgtaaagtgatttatctttcaagggggccacctacaaattgtcacggtatacctcccacggggtgccatgccacatagattgtcctattgtaaggtgatttataagtccacttttcgatatgtaaaattttaaaatgataatttattttttaattttttttaaaaaaataaacaaatcctcaaattgtgcaatcttttgaggccttatttcgttgcaaactttttcttcaaacttctaacttttctatcacatcaaaacttttttacacacgtaaactttcaacttttctatcacattattttaattttaaccaaactttcaattttaacgtaaactagacacatcctgacttcgttcgcagattcgcagcccgaggttccaggacgaaagcctcactgcgccatttatactagacaagaaagcgaggagcaaagcgccaacagtggtcctaggattcgagtgcttggagagcacagcatttaacggcattgccacgaacctggtggtgtacctggagactctcctgcacggcagcaatctcgcgagcgcgtccaatgtcacgacgtggttcgggacgagctacctcaccccggtgttcggcgccatcatcgccgacacgttctggggcaactacaacaccatcctcgtctccctcgtcttctatctccttgtaagcatcaatgcattttgcaagatagtatgttgaaatccatatgtccaatgtgcttaattaactttgcaatccatcgtctgtgtgcagggtatgatgctggtcaccttctcggcgttcctgccgaccaccgcgctgtgcaccgtggtgggctcgtcgtgccagcagccacttcttggcgcgcagaccatcgccttcctcgggctctacctcgtggcgttcggaagcggcggtgtgcgcgcggcgctgctgccgttcggcgcggaccagttcgacgatgacaacacggccgaccgcgagcgcaagatgtccttcttcagctggttctacatctgcgtcgacttcgggatgatcgtgtcgggccttttcatcgtgtggatccagcagaacgttagctggggacttggcttcggcatcgccacggcctgcatcgcgctcgccttcggcggcttcgtgctcgccacgcccatgtacaagcgccgcatgcccacaggcacgccgatcaagagcctcgcgcaggtcgtggttgccgcgtgccggaaggcaagactccgtgtccccgcggacactactcttctctacgaagtccatgacaagatcaaccagtcgaagatagcgcacaccgaccagttcggctttcttgacaaggccgcggtggtcatggagtccgacttggaagaggaatcgaacgacgtcgcggcggatgcctcgtggaggatctgcacggtgacgcaggtcgaggagctcaagatcctgctgcggctattgccgatatgggcgacgagtatcgtgctttcggcggcgtacgcgcagctgaacacgacgttcgtgcagcagggcgccgcgatgaacatgcggatcatgtcgttcaccatcccgcccgcgtcgatggtgtccttcgaggtgctctgcgtcctggcatgggttctcatgtacagctccgtgatcgtgcccatgctcaacagcttatccctggccaacggcgagccgtcgcagctgcagcggatgggcgcggggcggctgctcatggcgttcgcgatggccgtcgcggcgctggtggagatgatgcggctggacgcggcggggcgcggcgagtccctgagcatcgcgtggcagatgccgcagtacttcgcgctggccggcgcggaggtgttctgctacatcgcgcagctggagttcttctacagcgaggcgccggagtccatgaagagcatgtgcacgtccctggcgctgctcaccgtggcgctgggaagctacatgagctcattcatctacgccgtcgtgaacgcgttcaccgccgtggacgggcggcccgggtggatatcggacaacctcaacgaaggacacatggactacttcttctgggtcatggcggcgctgtgcacgctcaacttcgtcgtgtacagcgcgttcgcccggacctacagggtgaagctggtcgtgtcgtgattgttcgttactcccttaccatgatcaggttacacgcaatcgtggtcgtattgtgttacagaagaatcttgtactcctagctagcaatagcgacagccgacagtatgtgtaaagttcaaggaaaaaaaacaaggtttgatgggctgacagcccagcagcttccttt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0597800, RefSeq:Os04g0597800