Os04g0597900

From RiceWiki
Revision as of 11:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0597900| Description = Conserved hypothetical protein| Version = NM_001187147.1 GI:297723424 GeneID:9271520| Length = 4586 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0597900

Description

Conserved hypothetical protein

Version

NM_001187147.1 GI:297723424 GeneID:9271520

Length

4586 bp

Definition

Oryza sativa Japonica Group Os04g0597900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:30565751..30570336

Sequence Coding Region

30565868..30565981,30566095..30566779,30566896..30568400,30569886..30569939

Expression

GEO Profiles:Os04g0597900

Genome Context

<gbrowseImage1> name=NC_008397:30565751..30570336 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:30565751..30570336 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacttccacgcgctcccccgccgcgacctgcaggcgctgtgcaagcgcaacggcgtccgcgccaacatgaccaacgccgccatggccgatgccctcgccaagctcgccacggttgatgggatcgaggagttcgtcaagcaggcagtcgccctgccaccggcgccggcgaccaagccggcggttaaggcggtggcggaggaggatccgcgcgagaagaaggggagcccgctcccgcgcggccgccgcgtcacggtcagctcgccggaggtggtcaacctggacgacagcgacgaggaggctccggggcagagtaaggacgcccctctcccccgtggccgccgcggcacggtcaggtcgtcgaagctcatcaggccggacgacggcgaggaggagggcaaggaggacgaaaatcggggcgagaacgcgcctgtgcatggcgaggggcggcgcggtgccagcaggcgcgcccgggccgagcccgtggtcgctccaactacgaggagaagggccgctcccactagtaagatcgagacaggtgatgtggctgtggaagcgccaccggctccgaccactcgccggaggccgcagactagtacggaggctgcaccggcaccaaccactcgccggagggcccagagtactgtagcagcatctgcagaggagaaggtgccgaggggtagacggacgacgaggagagcagcggcgaagaagcccgatatgctggaggaagaaaccagagaacctcttgcgcctgagcaaaatagcgcacacgaggagccagtgcaggaagagcaaggaattgaagtggaggtgcctgcagaaactgtcgaggcagtagctcaggaatgcttgcctgaccctgatgcagtagttgaagagaagccggtgcaggaagaggaaggtgagatctccgttctgttaacgatttcactagctccatttcattcttctttagttgggaggtctgacttgagtgtgcctgttcgattggtaaattcagggatagaagtggaagcacctgcagaaactgtcgaggcagtagctcaggaatgctcacctgatgcagttgtagaagatgagcaggcagctgtcgaagctgaacagactatcagccaggatgattcgcccatttttggcatcgtgactgggacaattgttggagcgagtgaggaagcccctgtgtgcaacagtgagtgtcccaagaacatggcgactgaagagagttccgacacagttagtgaagagaaggaagccgtgcctgctgatgaggtgccgctggttacggtgacatgcggcgaagcaactagggatgctgaattgcccaccaatattggcaatgccaaagaagaggatgatgatgaaatggaggctgcgcatgaggctggttttgcggttgaagtggacggatctgagactgttgatgagctgattggtacactgacagagcatgctgacaatgccattcagcttaatttctcagcagagctcagttgtgctgatgaagaggcgggagtatttgccaccgatgatctgcagcagagctcagcgactgtgaagactatggtggcagacagcgaggccaacgaggaagaggatgcactggaagcagaaaatgaggtcggttttgcggttgaggagaaggaagttaggacaggcgatgagccgcatgaaacactgtcaaatgatgctgacggtgccattcagcttggggaggatgcactggaagcagcaaatgaggccggttgtgcagttgaggagaagggagttgagacagttgacgagccacatgatacagagacaaatgctgctgaaaatgctcaagaggagggagttgtggccagtgaggatctgctgcagatttcagagaccgagcaagatgaattcaactcggatatttgccatgccgttgaacacaatgaaagggacaatgtagaaagtgtgtcatcagagagggaggatgtcagtatggagaatgcgttcaccggtgacctcacactgaagttcgacggtcctggagacttgggtgatcgcaatacctctcttttggaagagggagctcggaccttgccactatctactgaaacgcccaacaatgtcactgatgcggtggtcacagctgccgaggaaatggtgtctgaaaccatgggtgtcagtaataagaagagtactgaactagctgcaatggaagacggcaacgaagtgaaggttgtggagaagcagaaggaggatcctgtggaactagttaaacttagcctaaggactcttagagccaagctcaaggagcagctgactaagcacaagcgtaaggaagcaaaaagggtggccttgggcaggttggacgagaatgtttgttga</cdnaseq>

Protein Sequence

<aaseq>MDFHALPRRDLQALCKRNGVRANMTNAAMADALAKLATVDGIEE FVKQAVALPPAPATKPAVKAVAEEDPREKKGSPLPRGRRVTVSSPEVVNLDDSDEEAP GQSKDAPLPRGRRGTVRSSKLIRPDDGEEEGKEDENRGENAPVHGEGRRGASRRARAE PVVAPTTRRRAAPTSKIETGDVAVEAPPAPTTRRRPQTSTEAAPAPTTRRRAQSTVAA SAEEKVPRGRRTTRRAAAKKPDMLEEETREPLAPEQNSAHEEPVQEEQGIEVEVPAET VEAVAQECLPDPDAVVEEKPVQEEEGEISVLLTISLAPFHSSLVGRSDLSVPVRLVNS GIEVEAPAETVEAVAQECSPDAVVEDEQAAVEAEQTISQDDSPIFGIVTGTIVGASEE APVCNSECPKNMATEESSDTVSEEKEAVPADEVPLVTVTCGEATRDAELPTNIGNAKE EDDDEMEAAHEAGFAVEVDGSETVDELIGTLTEHADNAIQLNFSAELSCADEEAGVFA TDDLQQSSATVKTMVADSEANEEEDALEAENEVGFAVEEKEVRTGDEPHETLSNDADG AIQLGEDALEAANEAGCAVEEKGVETVDEPHDTETNAAENAQEEGVVASEDLLQISET EQDEFNSDICHAVEHNERDNVESVSSEREDVSMENAFTGDLTLKFDGPGDLGDRNTSL LEEGARTLPLSTETPNNVTDAVVTAAEEMVSETMGVSNKKSTELAAMEDGNEVKVVEK QKEDPVELVKLSLRTLRAKLKEQLTKHKRKEAKRVALGRLDENVC</aaseq>

Gene Sequence

<dnaseqindica>118..231#345..1029#1146..2650#4136..4189#atcgctccagctccttccacaagttccactgcaattctgcaaacgaaccagctcaaatcgaagctcgaaacagggagagccagagaagcgcgcgtccgcgacggcgagtacgcaggcatggacttccacgcgctcccccgccgcgacctgcaggcgctgtgcaagcgcaacggcgtccgcgccaacatgaccaacgccgccatggccgatgccctcgccaagctcgccacggtaagccccgtcaactgttcgaccggccgtcgcttcagtcgcccattgccgtcctggattttgttaggtgcgggatgctcatgtgctacctcgccgggcccttcgcgttccaggttgatgggatcgaggagttcgtcaagcaggcagtcgccctgccaccggcgccggcgaccaagccggcggttaaggcggtggcggaggaggatccgcgcgagaagaaggggagcccgctcccgcgcggccgccgcgtcacggtcagctcgccggaggtggtcaacctggacgacagcgacgaggaggctccggggcagagtaaggacgcccctctcccccgtggccgccgcggcacggtcaggtcgtcgaagctcatcaggccggacgacggcgaggaggagggcaaggaggacgaaaatcggggcgagaacgcgcctgtgcatggcgaggggcggcgcggtgccagcaggcgcgcccgggccgagcccgtggtcgctccaactacgaggagaagggccgctcccactagtaagatcgagacaggtgatgtggctgtggaagcgccaccggctccgaccactcgccggaggccgcagactagtacggaggctgcaccggcaccaaccactcgccggagggcccagagtactgtagcagcatctgcagaggagaaggtgccgaggggtagacggacgacgaggagagcagcggcgaagaagcccgatatgctggaggaagaaaccagagaacctcttgcgcctgagcaaaatagcgcacacgaggagccagtgcaggaagagcaaggtgaaatctcaattctatcaaccatttcgctcgaaacttgtaatagatccatttcattattatgtagttttgaggtctgaatttagtgtgcatgttgttcaattggggaaattcaggaattgaagtggaggtgcctgcagaaactgtcgaggcagtagctcaggaatgcttgcctgaccctgatgcagtagttgaagagaagccggtgcaggaagaggaaggtgagatctccgttctgttaacgatttcactagctccatttcattcttctttagttgggaggtctgacttgagtgtgcctgttcgattggtaaattcagggatagaagtggaagcacctgcagaaactgtcgaggcagtagctcaggaatgctcacctgatgcagttgtagaagatgagcaggcagctgtcgaagctgaacagactatcagccaggatgattcgcccatttttggcatcgtgactgggacaattgttggagcgagtgaggaagcccctgtgtgcaacagtgagtgtcccaagaacatggcgactgaagagagttccgacacagttagtgaagagaaggaagccgtgcctgctgatgaggtgccgctggttacggtgacatgcggcgaagcaactagggatgctgaattgcccaccaatattggcaatgccaaagaagaggatgatgatgaaatggaggctgcgcatgaggctggttttgcggttgaagtggacggatctgagactgttgatgagctgattggtacactgacagagcatgctgacaatgccattcagcttaatttctcagcagagctcagttgtgctgatgaagaggcgggagtatttgccaccgatgatctgcagcagagctcagcgactgtgaagactatggtggcagacagcgaggccaacgaggaagaggatgcactggaagcagaaaatgaggtcggttttgcggttgaggagaaggaagttaggacaggcgatgagccgcatgaaacactgtcaaatgatgctgacggtgccattcagcttggggaggatgcactggaagcagcaaatgaggccggttgtgcagttgaggagaagggagttgagacagttgacgagccacatgatacagagacaaatgctgctgaaaatgctcaagaggagggagttgtggccagtgaggatctgctgcagatttcagagaccgagcaagatgaattcaactcggatatttgccatgccgttgaacacaatgaaagggacaatgtagaaagtgtgtcatcagagagggaggatgtcagtatggagaatgcgttcaccggtgacctcacactgaagttcgacggtcctggagacttgggtgatcgcaatacctctcttttggaagagggagctcggaccttgccactatctactgaaacgcccaacaatgtcactgatgcggtggtcacagctgccgaggaaatggtgtctgaaaccatgggtgtcagtaataagaagagtactgaactagctgcaatggaagacggcaacgaagtgaaggttgtggagaagcagaaggaggatcctgtggaactagttaaacttagcctaaggactcttagagccaagctcaaggagcagctgactaagcacaaggtaatgacacctgaccttatttatgcactgtagactatctattatataattaaaggaatagaaaaaggagcctccacgttcgctctcatggcttagaaattctcacattaatcagagaaaaagaaaaaacagagtccatatagaaatacaatttagaaatagctaaaatctggaattaaaaattaaaaaataaggaatattagaagaggagactagagtccatatagaaatacactttagaaatagttgaaattcggaattaaaaaataaggaatattataagaagagtatagagtccatatagaaatacaattaggaaataatagaaattcggaactaaaaataaggaatattagaagtagagtatagagtccatatagaaatacaattaggaaataatagaaattttgaattaaaaataaggaatattagaagtagagtatagagtccatatagaaatataattaagaaaaaaaatagaaatttcggaattaaaaaataagaaatattagaagtagagtatagagtccttataggaatttaaaactaactaaaattcagaaaaaaaaaggagcctccacgttcgctctcatgacctagaaattctcacattaatcagagaaaaagaaaaggcagagtccatatagtaatacaatttagaaatagctgaaattcataattaaaaaataaggaatattaaaagaggagactagagtctatatagaaatacaatttaaaaatagttgaaattcggaattaaaaaataaggaatattagaagaggagactagagtccatatagaaatacaatttagaaatagttgaaattaggaattaagaaataaggaatattagaagaggagactagagtccatatagaaatacaattaggaaataactaaaattcggaattaaaaataagaaatattagaagtagagtatagagtccatatagaaatacaattaggaaataaccgaaattcgaaattaaaaataagaaatattagaagtagagtatagagtccatatagaaatacaattaagaaaaaaaaagaaatttggaattaaaaataaggaatattagaagtagagtataaagtttatattggaatttaaaaccaactaaaattcagaataaaaaggagcctccacgttcgctctcatggcctagaaattctcacattaatcagagaaaaaaaagcatagtccatatagaaatacaatttagaaatagctgaaattcagaattaaaaaataagaaatattagaagaggagactagagtagttattacacattagtagttttgaaaagttattgcaaaatttaaaattatgttgttattgtaatatattttaataatataatgagaaaaatatatgctattatatgagagaaaatataatgatgctagccgcgcaatctgcgcgggccaccatgctagtttatcatataatgctgagtactaagacggctctataatgcagcgtaaggaagcaaaaagggtggccttgggcaggttggacgagaatgtttgttgattcaacacaactggacagcatcctgcaacaagccaaccaccaccctggaagatagaaagtgtgatcaacgtctttgttgcaagaacatatcatggggtttgcgttgctgtttgtttagtgaggttggtgatagtttggtgtgggttttggtcacgcaatggccacgtaaatcgacgagatgcgtgtgttgtgaaaccatggtttctgcaacctccgctcgaataatttatttatgtttcttcttctatttatgtacgattcgactgtattttaaagtctgatcgtagtaagctcatcacttcatcagctgcgtgtgtgcctgtttgtaagtgtgtattttcaaagttatttgcagttgctcaatctgttagatttctaatggcaaactagttgagac</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0597900, RefSeq:Os04g0597900