Os04g0602500

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Revision as of 11:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0602500| Description = Similar to Pectin acetylesterase| Version = NM_001060308.1 GI:115460345 GeneID:4336890| Length = 3758 bp| Definitio...")
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Gene Name

Os04g0602500

Description

Similar to Pectin acetylesterase

Version

NM_001060308.1 GI:115460345 GeneID:4336890

Length

3758 bp

Definition

Oryza sativa Japonica Group Os04g0602500, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:30803997..30807754

Sequence Coding Region

30804046..30804254,30804354..30804487,30804640..30804722,30804939..30805065,30805388..30805467
,30805543..30805629,30805832..30805956,30806059..30806119,30806322..30806375
,30806462..30806539,30806965..30807070,30807171..30807319,30807461..30807568

Expression

GEO Profiles:Os04g0602500

Genome Context

<gbrowseImage1> name=NC_008397:30803997..30807754 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:30803997..30807754 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccccgttactgtcggcaccctgctctctcctccctcccctttattgcttcctccctccctccctccctcttcacagcacaacacgctgccaccatttatgccactccctccctcccagctgtggtgacaggacgagcgtctcattctcaacctgaggctcaccttctctcagtcatattctccgtcttcttctccagtacgctcgcaatggctgcttcgtccggcgaatggctgagccgggcagctatggtgttggtgctaggtctcgtggtggcgtcgtcagctaaggcgggcgatgtggacatggtgttcctgaagagtgcagtgagcacgggagcagtttgcctggatgggagcccaccggtttaccacttctctcctggttctggctctggtgccaacaactggctggttcatatggagggaggaggttggtgcaggaatgcccaagagtgttctgtcaggcagggtaacttcaggggctcttccaaatttatgaggccactatcgttttcagggataataggtggcaaccagagaaacaatcctgatttctataactggaacaggataaaggtcagatattgtgatggctcatcatttactggcgacgttgaaacagtagaaacttcgacgaacctccatttcagaggggccagagtttggaatgccatcattgaagatctactagcaaaggggatgagcaaagcacaaaatgctcttctttctggttgttcggctggaggtctggctgccatactgcactgtgaccaattccgagatctgcttccagcaactgcaaatgtgaagtgcttttctgatgctggtttttttgttgatggaaaggatatcaccgggaatgattttgtcagaacattctacaaggatgtcgtaaatctacatggatcggctaaaaatttaccatcttcatgtacgtcaaagatgtcccctgatctgtgtttcttcccgcagaatgtagtgccaacattgcgcacaccgttgttcatacttaatgcagcatatgatgcatggcagatcaagaacgtcctagcacctagtgccgctgacaaaaagaagacttgggccaaatgcaagcttgatataacagcttgctcctcaagccagctcacaaccttgcaaaatttcaggacagattttctggcagctcttcctaaaccagagcagtccccagccaatttgagcatattcatagactcatgctatgcccactgccaatctgggtcccaggatacatggctcgctcaaggttctcctgtagttgagaagacgcaaattggtaaagcagtaggagactggttccacgatcgggaagtatcccggaggattgattgcccttatccctgcaacccaacctgcaagaaccgtgatgatgattaa</cdnaseq>

Protein Sequence

<aaseq>MPRYCRHPALSSLPFIASSLPPSLFTAQHAATIYATPSLPAVVT GRASHSQPEAHLLSVIFSVFFSSTLAMAASSGEWLSRAAMVLVLGLVVASSAKAGDVD MVFLKSAVSTGAVCLDGSPPVYHFSPGSGSGANNWLVHMEGGGWCRNAQECSVRQGNF RGSSKFMRPLSFSGIIGGNQRNNPDFYNWNRIKVRYCDGSSFTGDVETVETSTNLHFR GARVWNAIIEDLLAKGMSKAQNALLSGCSAGGLAAILHCDQFRDLLPATANVKCFSDA GFFVDGKDITGNDFVRTFYKDVVNLHGSAKNLPSSCTSKMSPDLCFFPQNVVPTLRTP LFILNAAYDAWQIKNVLAPSAADKKKTWAKCKLDITACSSSQLTTLQNFRTDFLAALP KPEQSPANLSIFIDSCYAHCQSGSQDTWLAQGSPVVEKTQIGKAVGDWFHDREVSRRI DCPYPCNPTCKNRDDD</aaseq>

Gene Sequence

<dnaseqindica>50..258#358..491#644..726#943..1069#1392..1471#1547..1633#1836..1960#2063..2123#2326..2379#2466..2543#2969..3074#3175..3323#3465..3572#agggtgctaagggagttgctttgagagccatccatatatactttgcttgatgccccgttactgtcggcaccctgctctctcctccctcccctttattgcttcctccctccctccctccctcttcacagcacaacacgctgccaccatttatgccactccctccctcccagctgtggtgacaggacgagcgtctcattctcaacctgaggctcaccttctctcagtcatattctccgtcttcttctccagtacgctcgcgtatgtgttcttccctgcatcctgctgatctattctgccgtgtgtctctttctgcttcttgggatgtttgataggaagggaagaacgttgtctttgcagaatggctgcttcgtccggcgaatggctgagccgggcagctatggtgttggtgctaggtctcgtggtggcgtcgtcagctaaggcgggcgatgtggacatggtgttcctgaagagtgcagtgagcacgggagcaggtgcaaatgtagcttctgttaattcttcccacctcgcagcattgcctatgcagaaaaacaaaatgagaattccattcttgatttttttttgtgagccatggttagattttattttatttttcttttttggtccttggtttgtattggtgcagtttgcctggatgggagcccaccggtttaccacttctctcctggttctggctctggtgccaacaactggctggttcatatggaggtaactaatctctaaattggtactacctctgtaaacacgaatcaattttatgtcacaagaacgttccaaaaaaataataattaagtcacaagaattatatcctaatagagtaatttttgttcaaaattttcttaacagaacaaaatgcgtcttatatttatttagattgtacatttggataattgaggtaacattttcttctactcgctttggaagggaggaggttggtgcaggaatgcccaagagtgttctgtcaggcagggtaacttcaggggctcttccaaatttatgaggccactatcgttttcagggataataggtggcaaccagagaaacaatcctggtatgtcacatgccatgtctcatgtgcactttgcagtttgtaccactcagcatttctatcttttcttttttcctttttcttttgccgggatgacggaggaagaaaggccatccaaatgttatttagatagtaggttgatgcatttctgtatccgcgataaccgtacttaattatgacaattaaaagaagaaatgcagtgaagcctatagcagtacatcaagacatgatagaagcctataacagtgtgctcttaacatttttcaacacatatgcctttgcatacctgaagttaaactttattgtgttatttctcattacgcagatttctataactggaacaggataaaggtcagatattgtgatggctcatcatttactggcgacgttgaaacagtagaaactgtaaattcctagacctgtggattgtacattcagttatgtcgtagaattgagattaaccccatttttgcaatatagtcgacgaacctccatttcagaggggccagagtttggaatgccatcattgaagatctactagcaaaggggatgagcaaagcacaaaatgtatgttcagtgctgactgctgacaactactagtagtagcatgctaatatattgttactagtaacatcaatttggaatttgactacaattaatgtagaattgcatgcacaattcctactgctctcgctgcattgcgccatcttcctgcataaagcttaaatctttatgatcataagggatgaaatattgcaaaccattccaggctcttctttctggttgttcggctggaggtctggctgccatactgcactgtgaccaattccgagatctgcttccagcaactgcaaatgtgaagtgcttttctgatgctggtttttttgttgatgggtaagtgtcatttggttgtgaacttgtcctttcattaatccataaattattctctgatttatttttatcttaatagaatgagtattgttattgtcaatgcagaaaggatatcaccgggaatgattttgtcagaacattctacaaggatgtcgtaaatctacatgtatgttgatttgtgaacttatagtgtctgtaatccagattacctaatgcttggatttacaaacgaccaagctgtatagttaaattcagtgtcctgggaagaagtctgggggcagtcttttcatgaagattaacagaacttatccaataatataattgagtgcagttttgcagattaatgacctttctttactctcttgcagggatcggctaaaaatttaccatcttcatgtacgtcaaagatgtcccctgatctggtcagttttggcctttgggcacttaactgggataaacactcctgattcctcgttgaatttgtgctaattttcggaaacaactgcagtgtttcttcccgcagaatgtagtgccaacattgcgcacaccgttgttcatacttaatgcagcatatgatgcatggcaggtaaatttcccagcttctaccagtactgtaaaattgtactctccgtttcaaattacttaccattttagctttgtcctaagttaaaatttctaattttgaccatcaatttgtagaaactcatatacataaacaccatatgattaggagtatatattacgatagtatttctcatggtgaaactaaaaacacaaatcttatgatattaaactatatacgtttttagaaattgattatcaaagttagaaatagttgacttaggacacagctaaaacaacaagtagtttaaacggaggggtagtatttctctgcagtatgtaagcttgagtctaatcacttcatttaagatagatagcaccaactgaccctgaatttatgagaagacaagtaacaaaccagcaccttaatatatttgaatttaattgcagatcaagaacgtcctagcacctagtgccgctgacaaaaagaagacttgggccaaatgcaagcttgatataacagcttgctcctcaagccagctcacaaccttgcaaagtgagttttttttttttttgggtacaagttacaaccatcattccactacacgagttaatctttttttttgtttatctaattcacttcattttcggcacagatttcaggacagattttctggcagctcttcctaaaccagagcagtccccagccaatttgagcatattcatagactcatgctatgcccactgccaatctgggtcccaggatacatggctcgctcaaggttctcctgtagttgagaagacggtaagtttgtctcaaatgctgaacagtttcatccgaattcagaacataactagaacagaatagatgcagaaaaaaagtttgcaaagccaactcacaagttagctactgactataatatgaactatttctacgtgtttgcagcaaattggtaaagcagtaggagactggttccacgatcgggaagtatcccggaggattgattgcccttatccctgcaacccaacctgcaagaaccgtgatgatgattaagcaattcgacctgaaaacttctgttaaattctagtactgtgttgttaaatatcaagtgaagcaataagggattagtctatagatagagccatagagaggtgttactgttacccacgatttcttcaattcttctccattctgtttctatgcctttgtcgacgatgaatcatgaacatatagttcagt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0602500, RefSeq:Os04g0602500

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0602500&oldid=17050"