Os04g0604000

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Revision as of 11:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0604000| Description = Similar to Actin filament bundling protein P-115-ABP| Version = NM_001060319.1 GI:115460367 GeneID:4336902| Length =...")
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Gene Name

Os04g0604000

Description

Similar to Actin filament bundling protein P-115-ABP

Version

NM_001060319.1 GI:115460367 GeneID:4336902

Length

9130 bp

Definition

Oryza sativa Japonica Group Os04g0604000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:30862395..30871524

Sequence Coding Region

30862674..30862787,30862874..30863034,30863122..30863440,30863928..30863993,30864117..30864242
,30864337..30864477,30864573..30864583,30864709..30864856,30866024..30866152
,30866249..30866386,30866509..30866577,30866651..30866719,30866984..30867139
,30868311..30868411,30868502..30868652,30868991..30869153,30869312..30869444
,30869534..30869711,30869798..30870040,30870128..30870196,30870502..30870601
,30871089..30871144

Expression

GEO Profiles:Os04g0604000

Genome Context

<gbrowseImage1> name=NC_008397:30862395..30871524 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:30862395..30871524 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcaatttctatgaaagatgtagatccggctttccgtggagttggacaaaaggatggtttggaggtatggcgtattgaaaacttcaagcctgttcccgtgccaacatcttcacacggaaaattttacatgggtgattcatatatcatcttgaagacgacagccttgaaaaatggttcatttcgccatgatctccactactggcttggaaaggatactagtcaggacgaagctggaactgctgcaattctaactgtggagcttgatgctgcccttggagggcgtgctgtccagtacagggaagtacaaggcggtgaaactgaaaagcttctctcctattttagaccatgcatcatgccacagccaggaggggtagcttctgggttcaatcatgtagaggtcaatcagcaagatcatgttacccgcttatatgtgtgccaaggaaagcatgttgttcatgttaaagaggttccttttgttcgttcatcccttaatcacgaggacatattcattttggataccgcgaacaaaattttccagttcaatggctctaactcatgcattcaagagagagcaaaagctcttgaagttgtgcaatatatcaaagatactttccatgagggcaagtgcgaagttgcagctgttgaggatggaaagttgatggccgatactgaagctggtgaattttggggtttgtttggtggttttgctcctctcccaaagaagacatcttcagaggacaatggggatgataaggaaactgtgaccaaattgctatgttttaaccaaggaacgctggagcatattagttttgaatctttggagcatgagttacttgagacaaacaaatgctacttgttggactgtggagctgaaatgtatgtttggatgggcagaggtacttctttgcaagtgagaaagggtgcaagtgaagctgctgagaaattgctcattgatgagaaccgaaaaggatcaaatgttatcaaagtgattgagggattcgaaacaatcatgttcaagtcaaaatttaacaagtggccgcctactcctgatttgaagctgtcatctgaggatggccgaggcaaagtggcagctctactcagaagtcaaggattggatgttaaaggattgatgaaggctgctcctgaagaagaagaaccccaaccttatattgattgcactggtcatttacaggtctggcgagtaaatggcgatggcaagactcttctttcatcttctgatcaatcaaaactttacaccggagattgctacatttttcaatacacatacactggagatgataaggaggaatgtcttattggaacttggtttgggaagaagagtgttgaggaggacagaacatcggcaatttcactagctagcaagatgtttcaggctgcaaaattccaggctgcccaggctcgcctctatgaagggaaagaaccgattcaatttttcgtcatatttcagagtcttcaagtttttaagggtggacttagctctggatacaagaactttattgctgtaaatggtaccgatgacgacacttacgttgaaggtgggcttgctctcttccggattcaaggctcaggatcagaaaacatgcaagcaattcaagttgatgcagtgtcttcgtcattaaattcatcctactgctacattctacacaatggaaacactgtgttcacatggactgggaaccttacaacctcactggataatgacttggttgagagacagctagatgtaattaagccagatctgccatccaggtcacaaaaggaggggagagaaaccgaccaattctgggaactcttaggtggaaaatgcaagtattcaaacaaaaaaataggaaaagaaaatgaaagcgaccctcatcttttctcatgtatcttatccaaggaaaatctaaaggtcaaggaaatacaccactttactcaggatgacctgatggcagaagatattttcgttctagactgccgcaccgacttgtttgtttgggttggacaggaggtggatgccaaattgagatcacaagcgatggacatcggtgagaaatttcttctacatgatttccttatggaaaatctctcgcaagacacaccaatttttattgttacagaaggaagtgagccacagttttttactaggttcttcacttgggactcagcaaaatcgctgatgcatggcagttcataccagaggaagcttgcaatagtaaagggtggagcaactccatcgcttgataaacctaaaaggcgaacaccagcgttttcaggaaggaacgcaggacaagataaatctcagcagcgcacaagaagtatgtcccacagcccagaacgtcaccgtattcgaggaagatctccagctttcaccgcaatagcttctgcctttgagaacccaagtacccggtatctttccacccctccccctgctgtcaagaagcttttcccaagatccggagggtctgaattgccaaagacatcatccaaacaatcagctatcaatgctctcaccagtgctttcgagggtcctacgaaaagtacaatacctaagtctgtaaaagcgagccccgaggcagagaaggcaatacaggaggaaggctcaacgatcggtgaaagtgaaaacgagccagaagatgatgagaacagcacaatctacccatatgaacgtttgaccaccacatctgatgatcctgctcctgacattgatgttaccaagcgagaggtctacttatcatcagttgagttcacagagaagtttggcatgacaagggcatcattcaaaaaccttccaaaatggaagcaaaacaggctaaagtctgatctccagctcttttag</cdnaseq>

Protein Sequence

<aaseq>MSISMKDVDPAFRGVGQKDGLEVWRIENFKPVPVPTSSHGKFYM GDSYIILKTTALKNGSFRHDLHYWLGKDTSQDEAGTAAILTVELDAALGGRAVQYREV QGGETEKLLSYFRPCIMPQPGGVASGFNHVEVNQQDHVTRLYVCQGKHVVHVKEVPFV RSSLNHEDIFILDTANKIFQFNGSNSCIQERAKALEVVQYIKDTFHEGKCEVAAVEDG KLMADTEAGEFWGLFGGFAPLPKKTSSEDNGDDKETVTKLLCFNQGTLEHISFESLEH ELLETNKCYLLDCGAEMYVWMGRGTSLQVRKGASEAAEKLLIDENRKGSNVIKVIEGF ETIMFKSKFNKWPPTPDLKLSSEDGRGKVAALLRSQGLDVKGLMKAAPEEEEPQPYID CTGHLQVWRVNGDGKTLLSSSDQSKLYTGDCYIFQYTYTGDDKEECLIGTWFGKKSVE EDRTSAISLASKMFQAAKFQAAQARLYEGKEPIQFFVIFQSLQVFKGGLSSGYKNFIA VNGTDDDTYVEGGLALFRIQGSGSENMQAIQVDAVSSSLNSSYCYILHNGNTVFTWTG NLTTSLDNDLVERQLDVIKPDLPSRSQKEGRETDQFWELLGGKCKYSNKKIGKENESD PHLFSCILSKENLKVKEIHHFTQDDLMAEDIFVLDCRTDLFVWVGQEVDAKLRSQAMD IGEKFLLHDFLMENLSQDTPIFIVTEGSEPQFFTRFFTWDSAKSLMHGSSYQRKLAIV KGGATPSLDKPKRRTPAFSGRNAGQDKSQQRTRSMSHSPERHRIRGRSPAFTAIASAF ENPSTRYLSTPPPAVKKLFPRSGGSELPKTSSKQSAINALTSAFEGPTKSTIPKSVKA SPEAEKAIQEEGSTIGESENEPEDDENSTIYPYERLTTTSDDPAPDIDVTKREVYLSS VEFTEKFGMTRASFKNLPKWKQNRLKSDLQLF</aaseq>

Gene Sequence

<dnaseqindica>8738..8851#8491..8651#8085..8403#7532..7597#7283..7408#7048..7188#6942..6952#6669..6816#5373..5501#5139..5276#4948..5016#4806..4874#4386..4541#3114..3214#2873..3023#2372..2534#2081..2213#1814..1991#1485..1727#1329..1397#924..1023#381..436#gatggccctttacttttcccctcttgtcctctctccggactctgggtcgtcgcttctctccccacaaggattttctaaatttcattgccatcaagaacacacaggcttcaggtaagagggtctatctgcatttgtgttcttttatttttcattcaatgacattttttatgttcctatgatccttttgtgttctcgggtgtaatttgttgccaactatatcataatgagcttttgttggtgtttgggtgaccattgtgatgtttgaactatgatcatatcattcatctttttcttaaaaaaaaaaacttgtttgcagttccagcatgatgttagcgtcgttttgagacaaaatcaggaaaggctctttcacaacatcaagcatgtcaatttctatgaaagatgtagatccggctttccgtggagttggacaaaaggagtatcctcactgcattctatttccaatatttattatggcttggacacttgatctcacagaaaatacattttgtgaccaaaggattattactgactcacacacaaaaaatgtcaacatatgtaatcatggatggaatgattgttaactgttcttggcaacaaaatcatccaacacaagaggctaagcataattgttcctggatagtctaaaaaaataggcaaagctggaacaaaaggctatcatgaatttataatctattgcatctataagaaaaagtagttccatagcatcatagggtgactaaaccaaacaaaaacaatgatgaagttaaagtaaataccagtcaaataaaactaaggttaagggctgctgatttatcctcacaaagttagacttggtcatcaacccccatgagaattgtagccctccactatgtcgatcagaggagtcttttgtacatgtattgtactccttaattaccttacagtggtttggaggtatggcgtattgaaaacttcaagcctgttcccgtgccaacatcttcacacggaaaattttacatgggtgattcatatatcatcttgaaggtatggtagtattcattccttgttattccttttcaacattattggtgcataatcgcaaacatagatgatgtaattcatcttgaaacaaacattacatgacattataaactattttctttctttatcttttaccacactagataatgcaatacttaagtcattttggtgaaccacatgcttcactaaccataccattgtcgtcttgatgccacaatttgtatagtatatggcttcaagtttgttcatgcattatatgcttactgcaccatgtgttttgaacctcatattcatctttcttcctatagacgacagccttgaaaaatggttcatttcgccatgatctccactactggcttggaaaggatactagtcaggtagactctcaaataatctggcagcacctcacttgacttagctctcccaagctaactattaatacacaaatgcctaatatttgaaaggacgaagctggaactgctgcaattctaactgtggagcttgatgctgcccttggagggcgtgctgtccagtacagggaagtacaaggcggtgaaactgaaaagcttctctcctattttagaccatgcatcatgccacagccaggaggggtagcttctgggttcaatcatgtagaggtcaatcagcaagatcatgttacccgcttatatgtgtgccaaggaaagcatgttgttcatgttaaagaggtaatctattgaagttgatcactgcctttgtttatgcaaaggcttgctgggttttttattcttatgctgcttgtcatacaaaccaggttccttttgttcgttcatcccttaatcacgaggacatattcattttggataccgcgaacaaaattttccagttcaatggctctaactcatgcattcaagagagagcaaaagctcttgaagttgtgcaatatatcaaagatactttccatgagggcaagtgcgaagttgcagctgttggtaagcttttttttttttgtttatgtgcttttgctttgaatattcaaagtcacatttaaagcatttgacaatctggattcctctcatagaggatggaaagttgatggccgatactgaagctggtgaattttggggtttgtttggtggttttgctcctctcccaaagaagacatcttcagaggacaatggggatgataaggaaactgtgaccaaattgctatggtaatactcaagtcaaatcactatcaatattccaatacccgcatcaagaaagtgttagttttgaatgagaataatttgcagtcaaatgatgctattttgagatcaattctcttaaaatttatgaaactgaattagtgatttctattacttcctcccagttttaaccaaggaacgctggagcatattagttttgaatctttggagcatgagttacttgagacaaacaaatgctacttgttggactgtggagctgaaatgtatgtttggatgggcagaggtacttctttgcaagtgagaaagggtgcaagtgaagctgctgaggtaatttcttattggccatatgtgtatgaaggttctgattattggaagctgatttttttttcattggtactctccattcaattatagtgttatgaaacaaaaagggaacatcaaggtagaacttggctacagcaatacaacttttgtaaaagtccattcatttccatcttacaaataaaaaaaaaactatttggcatgtattccagtactcagcaaatgtaccaccttactgatataccatgctgacttttttaaaaaatatatatattcttatgaccaaaacacaggcacatttcacatttcactttgctgtgtgtgtttctcttacttatttacagaaattgctcattgatgagaaccgaaaaggatcaaatgttatcaaagtgattgagggattcgaaacaatcatgttcaagtcaaaatttaacaagtggccgcctactcctgatttgaagctgtcatctgaggatggccgaggcaaagtggcaggtgattgcctacagactcattagttcaagcgtgaagtattgctaaaagagtatcaaatgtacacattcatcatgtatattcttactacagctctactcagaagtcaaggattggatgttaaaggattgatgaaggctgctcctgaagaagaagaaccccaaccttatattgattgcactggtcatttacaggttttttttcgatagctgttatgaatctgtattgctgtgagcaacaatccttttaaatttgtttgtctacacatcatttagggtgctagctaggttttgaagttgagacctgaagcctctcaaacgccaatgtactcatgcaaaaataaattaatagagggtaatcaacaaacactataggtgtgtttggtttggggaccaagtgggatgggttagaccaatcccagttttttaggatgggatggttccagttgtgtgtttggtttgtggtatgggatggttatagttttttgtttggtaaaaatgattgagatgggatgggatggacaatgttgcggacgaggcggcgactggtcgtggaggtgaggagaggcgaggcgaggcgcggactagtgacggcggtcggccgcggaggcggtcgcggacgaggcggcgaccggtcgtggaggcgaggcgaggcgcagacgagcggcggccggtcccggaggcgacgaggcgcggacgagcaacggcggccggtcgcggaggcgaacgtggacgagcgacggcggtcagtcgcagacgaggcggcggccggtcgtggaggcgaggcgaggtggagggagcaggcggaggaggacggagcggcaccgggggagggagcggtgccgggggagggacgggtggccgtggcggtgccgcggcggagctgagtgggaggctgtgggagctgacgacgagcggcggcggtcggtcgtggaggcggtcgcggacgaggtgacggccggtcgcggaggcggaggtcgacgcggatgaggcggcggcgctgcggcggagccgagcgggaggctacaggagctaaagccgtgggctccattgaagtgggatggattggtccggccgattttggcggaccgtttcatcttggatctgagaggaatattcctctccagggaccatcccgtcccactcacctctcaaccaaacacccctaaaagtgggttcatcccatcccatcccatcccatccttgcaaccaaacactacctatatgtatgcaaaggcatctaactaaatcatgcaatcgatctacacccctctatctttgacagtttgatgtccatccttgaactaacatttttacattgcagtcaaccaatttattttagtgaagtttgatggtgattgtacaggtctggcgagtaaatggcgatggcaagactcttctttcatcttctgatcaatcaaaactttacaccggagattgctacatttttcaatacacatacactggagatgataaggaggaatgtcttattggaacttggtttgggaagaagagtgttgaggtaatatctacgcactaactctagttatgaaaaaattgaaataaacatacacatagatttataggacatatgtgctaggaactaattaaatatttgttgtgaagtcattagcaaggactaaggataaagttagcagtctgatgctgttagctgattttttctagattgataggacaacagagaggtttgcgtaatgtggtaactgtttaacttctgtatgataaattcaagtttctgcatgtgggcgatcttaattactttcaggaggacagaacatcggcaatttcactagctagcaagatgtttcaggctgcaaaattccaggctgcccaggtaacctgtccattgtccatatatgacatattacatcacattatcactctaattcattggtgcttccatgcaggctcgcctctatgaagggaaagaaccgattcaatttttcgtcatatttcagagtcttcaagtttttaaggtttttcttctactcagtagataagtcaatatccttgagtggatctgacagagtgactgttagatatatataacaatttgacacttaatccctctccccctcacaccggctttctaatgtagggtggacttagctctggatacaagaactttattgctgtaaatggtaccgatgacgacacttacgttgaaggtgggcttgctctcttccggattcaaggctcaggatcagaaaacatgcaagcaattcaagttgatgcagtaagtgcaaaggcatctgtttggtccagacatatgcgagagcgtaattcttatattgttatcaatggtttcatctctatgatccttttttactaggtgtcttcgtcattaaattcatcctactgctacattctacacaatggaaacactgtgttcacatggactgggaaccttacaacctcactggataatgacttggttgagagacagctagatgtaattaaggtgtgaatcacttattgcggaaaatattaatctttatacccatgcagttttcctgacacttggtatgctcctatacatttaaatccttgattgaaatcttacagtaggttttcatattaattagcaaaatgcagtttgaatatcgtagaaaagaagagaaggctatatagttgatcatgatgcgaccagattataaccatgtagatttattagatacatattaactatatgagagatacaactataatttagttaattgtgaatcacttattgtggaaaatattaatctttatacccatgcagttttcctgacacttggtatgctcctatacatttaaatccttaatcgaaatcttacagtaggttttgatattaatcagcaaaatgcagtttgaatatggtagaaaagaagagaaggctatatagttgatcatgatgcgaccaaattataaccatgtagatttattagatactccctccgtccctaaatgtttgacgccgttgattttttaaaacatgtttgaccgttcgtattattcaaaaaaaattaagtaattataaattattttcctatcacttgattcattgttaaatatacttttatatatacatataattttacatatttcataaaatttttgaataagacgaatggtcaaacatatttaaaaaagtcaatggcgtcaaacatttagggatggagggagtacatattaactatataagagatacaactataattttagaaataaaagcaagaattttgcgaggcgttcatctagcttgttgtaactttatgtgcatgtggatatatacaagtctagtagttatgtatggttattggatgcttgtcatcctcacaagtcataatcattcttcttgatatcatggcttatttggcttatgttttttgcctatgttctgaaacaatcttagctttgatatacgggtaattttaccatccttgagaaggtaacaggaggtaccaccatttctggtgtaaaactgggtatctctaggtataaggtacctgggtaccaaaatttttagcgtaaaatttaggtaccttgaggtactttctcaaggaccgtaaaatttctcgtggtatacatgtccactgaacattgatacaacttcttttttgtgcttctcttttacatgatacagccagatctgccatccaggtcacaaaaggaggggagagaaaccgaccaattctgggaactcttaggtggaaaatgcaagtattcaaacaaaaaaataggaaaagaaaatgaaagcgaccctcatcttttctcatgtatcttatccaagggtaatcaaaaacaaattattgaatgttttgatatggtctacttagtgggattaccatttcaacatctattgacatttttgtttttttctgcacttcaaatgttttgctggtggggtttcatgaagaaaatctaaaggtcagaaaaaaaaactgacgcatagctttttccccccctaagcgtgctctccatgtgtctaatgccagtccttcctttgaaatctacatgatcaggtcaaggaaatacaccactttactcaggatgacctgatggcagaagatattttcgttctagactgccgcaccgacttgtttgtttgggttggacaggaggtggatgccaaattgagatcacaagcgatggacatcggtgaggtattaactaaagttacttgatccgtctattctaattagaaatcacgttttctgtttggcatcttaattcattttctcactgtaactatgctagaaatttcttctacatgatttccttatggaaaatctctcgcaagacacaccaatttttattgttacagaaggaagtgagccacagttttttactaggttcttcacttgggactcagcaaaatcgctggtaagtaattatatttagattcaagatcagtttttgttctatggtgattagatgagcgcccaaacataccccccattttggttttctcacatctactctttctttcttttttttttgtcgcagatgcatggcagttcataccagaggaagcttgcaatagtaaagggtggagcaactccatcgcttgatgtaagtctcaacatagtgctcaagtagcatattgatagaatgcggtccttattgcttgtaaaaagtcactctcttcatcatttttgctatttgttgatacttgtgattagctgtgcacatatgcatgtgataattacttggttgtaccaatgagccattgttaaactcttggtcatctgattaacaaaccaaactgccatgttgagtgtaagtttgaaatatgggttccaagtggctaacatttgatgagatttcatttttcttgtccagttgtatatatagttgcatcatttatatacagttcatgtttggtgatgtactgtcctaccaatgcctttcaaccagggaaatttggcctctgtttcaatctttggggttttacacttaatggcctctctttcaatctatattgtgatttacacttaatggcctctctttcaatccatatagattaccttacatatatatattctttatgcgttgccagaaacctaaaaggcgaacaccagcgttttcaggaaggaacgcaggacaagataaatctcagcagcgcacaagaagtatgtcccacagcccagaacgtcaccgtattcgaggaagatctccagctttcaccgcaatagcttctgcctttgagaacccaagtacccggtatctttccacccctccccctgctgtcaagaagcttttcccaagatccggagggtctgaattgccaaagacatcatccaaacaatcagctatcaatgctctcaccagtgctttcgagggtcctacgaaaagtacaatacctaagtctgtaaaaggtactctatcacctattatgctagaatacggaaggcaagtgttcagttgtcttataattttcctttatgaatttctgcaaaattaagcgagccccgaggcagagaaggcaatacaggaggaaggctcaacgatcggtgaaagtgaaaacgagccagaagatgatgagaacagcacaatctacccatatgaacgtttgaccaccacatctgatgatcctgctcctgacattgatgttaccaagcgagaggtgatcaactaatttttccacttggtattttctcctgatgttgtaagatgaacacaataatatgtactattttcaactgaatgcaggtctacttatcatcagttgagttcacagagaagtttggcatgacaagggcatcattcaaaaaccttccaaaatggaagcaaaacaggctaaagtctgatctccagctcttttagctcaactctgaggaacagccccttgtcctcgccttgaaggcatcacccatttttgagggcacgcaatttccgtgccattctcgagttcttctcttcacctattttggtctgctattgctctaggatcaccctgctctttctgcagtagcaagtaggtcttttggtagtgtttttcttttccctttattgatatagagtgctcatgaatgtttctgttgtgagcctcgcatttttgtgccgctacaaaatttttttaagaaaaggtctatttattgtctc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0604000, RefSeq:Os04g0604000