Os04g0608800

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Revision as of 11:27, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0608800| Description = YT521-B-like protein family protein| Version = NM_001060352.1 GI:115460433 GeneID:4336934| Length = 4287 bp| Defini...")
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Gene Name

Os04g0608800

Description

YT521-B-like protein family protein

Version

NM_001060352.1 GI:115460433 GeneID:4336934

Length

4287 bp

Definition

Oryza sativa Japonica Group Os04g0608800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:31219657..31223943

Sequence Coding Region

31219804..31219837,31220747..31220802,31220905..31221079,31221454..31221530,31221654..31221891
,31222026..31222090,31222240..31222698,31222865..31223077,31223225..31223614

Expression

GEO Profiles:Os04g0608800

Genome Context

<gbrowseImage1> name=NC_008397:31219657..31223943 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:31219657..31223943 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcagctcagcaggcgcaagattcagctgatcacatggagcctctagagtcacgccttgtggttgagaaaagtccttctacaagtattctctctagtgaagatcataatttatctagtactgctttgcacggcgcaagttccttaaaatcaaccaaaagtgctcaagagaagggaagctttttgggtaaaggtggagaacaacatttcatctaccagcccaatgtgtatacccctcagccacatacagtcttttctggaggatacttgaaccatctgggtcaatgggaagaatatccgcatgttgccagtgcagatggaactgatgctgcatctcctgtgatgtacagttcttattcccctgtgccaaccatgggagacagccaaccatattaccctttgcactgccctctgtcaagtccttactatcagccacctgcttctcctagcatgggatattcaaattctgcaactgggatgtcgcagtttgatcctatgcaagagtattaccttcctgatggacttctgtattcaccaactcctgggttccaccagcatttcggttccttcgatggaactcaaatgcaacaaagtgttactggaatttttggacaagggaacataccattggcttctggaatgcatcaggggtccatgtacagctctgggtcatacaaggcacggcagcaagtcggtaattttggaggtagcacgccaaattggagtgctgccagtcgcagatttagcccctttgacaggggcttcaagcatgataagggctctcttgagtttatgaatgagcaaaaccgtggtccacgggccaccaaacccaagaaagaagtgaataactcctcaactgaggacaaaaataggaaaagtgcattaataaatgattctaacttgtacaaccaacatgattttgttattgagtatgaggatgccaaattttttgtaataaaatcctataccgaagatcatgtacacaagagcataaagtatggtgtctgggccagcactgctagtggtaacagaaagttggatgctgcttatcgtgaagcaaaagagaaagaagccacttgtcctattttcttgtttttctcggttaatggcagcggccagttctgtggtgtggctgagatgattggacctgtggacttcgacaagagtgttgattactggcagcaagacaagtggagcggccagtttcctgtcaaatggcacattatcaaggatgtcccgaacagccttcttcggcacatcattctcgagaacaatgaaaacaagcctgtgaccaacagcagggacacacaggaggtgagactggaccacgggctccagatgctaacaatcttcaagaaccatgaggtcgagacaactatcctcgaggatttcgacttctacgagcagcgggagaaagccatgctggatatcagacagcgacagaagcagcagcatactgattccgaggtccagaagccgatggtggaggccaaggaaccagtggatcttatgaaccaaatctcagccacctttgcccgggccgtgcagcttggagaaaccaagggcagcagggaggacaaaccaaaggttgaagatgcttctgctgctgctgttgctgttcctgagaacgagcctgttgctcttgctgagactgaaggattgttagcagattcagagccaagccctttgaaggaaagtggttga</cdnaseq>

Protein Sequence

<aaseq>MAAAQQAQDSADHMEPLESRLVVEKSPSTSILSSEDHNLSSTAL HGASSLKSTKSAQEKGSFLGKGGEQHFIYQPNVYTPQPHTVFSGGYLNHLGQWEEYPH VASADGTDAASPVMYSSYSPVPTMGDSQPYYPLHCPLSSPYYQPPASPSMGYSNSATG MSQFDPMQEYYLPDGLLYSPTPGFHQHFGSFDGTQMQQSVTGIFGQGNIPLASGMHQG SMYSSGSYKARQQVGNFGGSTPNWSAASRRFSPFDRGFKHDKGSLEFMNEQNRGPRAT KPKKEVNNSSTEDKNRKSALINDSNLYNQHDFVIEYEDAKFFVIKSYTEDHVHKSIKY GVWASTASGNRKLDAAYREAKEKEATCPIFLFFSVNGSGQFCGVAEMIGPVDFDKSVD YWQQDKWSGQFPVKWHIIKDVPNSLLRHIILENNENKPVTNSRDTQEVRLDHGLQMLT IFKNHEVETTILEDFDFYEQREKAMLDIRQRQKQQHTDSEVQKPMVEAKEPVDLMNQI SATFARAVQLGETKGSREDKPKVEDASAAAVAVPENEPVALAETEGLLADSEPSPLKE SG</aaseq>

Gene Sequence

<dnaseqindica>148..181#1091..1146#1249..1423#1798..1874#1998..2235#2370..2434#2584..3042#3209..3421#3569..3958#gctcgatttttttcccaataaatttgcccgagttttcctcttttggttccccagtttcagtttaagctcttaaaccctcgccgggagatttcgccgcaagattctcattctccgcgcctatttgcttgccagttgttgatcttggagatggcggcagctcagcaggcgcaagattcagctggttcgttgctttttttccccttttatttgggttgcttgttgattttggagttcttttttttttttgcttcactttgcatatcttctgtgttgaatttgaggagttgggtgggagtttatctgtgaaggtcgcgatcttggcggtgtttgttcgtgtggggatcgtggtaaatttgcgaattttcatggttttctggtcaaaattaaaattagcccaggactgagattttgtacgacgctgctgttctgatgctgtaaaatctcgaccttctcttctctctcttatttcttttcgttttttctttatttttttgttagggttgattggagaatagcaattttagatgccatttatccccaaaatcgattttgctgatagtgatttcttcacttgttagttagcatgtgctcaagcttctactctatttacttcgtaagttggtaaggtatctagttgtggcaaggtcagtaacaaagtttgagtaagtaatgacctaaatggtagttcatgatgtattaggcgaccaagcgttcatcactgaacaaaccaacatggataatttacagtgtagtttattatgggagcttgttgctgatgtcctggtcttacagaatcaatgcaacttaagcaaaagaaaaaactaggaagtgcctccacatatttttttcactaataagaatttctaccgtggttctttgtttgttttaacatgttagcagcattattcatcatttcgtctgtacgattgtacatgaaagttggttacttagtttatgcgcctatacgcaatagttcccttttgttaacttccatttctaatttgcccggatgcaacttagtttactattttgtcataaaaggcttaatttactgtgctgagacttatacatggatgtccctcttgaatagatcacatggagcctctagagtcacgccttgtggttgagaaaagtccttctacaagtgtgagtgtgaaaaagcaggttattacagtcataatccttgtagcttttttttttcttcgcaaatgtttcggtactactaacagttgattggtgttatgtcagattctctctagtgaagatcataatttatctagtactgctttgcacggcgcaagttccttaaaatcaaccaaaagtgctcaagagaagggaagctttttgggtaaaggtggagaacaacatttcatctaccagcccaatgtgtatacccctcagccacatacagtcttttctggaggttagagcacattttttttgtttctctgtcttgatgcttacacccaccaacacattgtcatgcattgaagatactaaaaactgtagcatttgtttctagactgaaatagatttagattttaattagctgcacaggttctatctgagggggcatttgctaatgtgctgctctacgttgcacatttacttcacacattttgaggaaattgattgactaatttctgtcttggcactatagtcaggaaactgtagtcatttggttccccattgttgattctgtagaacatgtttgctctattgttttgagatgatagcacattaccctgttcatgaattacaactgcttgatttgaatgaagaatgttctttcgacaggatacttgaaccatctgggtcaatgggaagaatatccgcatgttgccagtgcagatggaactgatgctgcatctcctgtaagtacatggttattatacacctcccctctttcttaatgctttcaccatcttgttctgctaccatgattttacaagaagggtcagttactaatgtaatctccttgatatgcaaatgttcaggtgatgtacagttcttattcccctgtgccaaccatgggagacagccaaccatattaccctttgcactgccctctgtcaagtccttactatcagccacctgcttctcctagcatgggatattcaaattctgcaactgggatgtcgcagtttgatcctatgcaagagtattaccttcctgatggacttctgtattcaccaactcctgggttccaccagcatttcggttccttcgatggaagtaagatttcctttttaatctctctatggcttctcattatgtatacagggttttgataactgtgtgcaatgctagaaatattttactatcttaacccatgccatctttgtaatgaccgtatgatattattgcagctcaaatgcaacaaagtgttactggaatttttggacaagggaacataccattggcttctggaatggtatgtgatacactgtttcaattgtattttgatgtatttgtactgattgtatcagtgattgtgctcaatagttggttctgtgaggacatttgtcgatgattgtttctgctgtgcttattttcaggtactgataacttgtgtttttgcagcatcaggggtccatgtacagctctgggtcatacaaggcacggcagcaagtcggtaattttggaggtagcacgccaaattggagtgctgccagtcgcagatttagcccctttgacaggggcttcaagcatgataagggctctcttgagtttatgaatgagcaaaaccgtggtccacgggccaccaaacccaagaaagaagtgaataactcctcaactgaggacaaaaataggaaaagtgcattaataaatgattctaacttgtacaaccaacatgattttgttattgagtatgaggatgccaaattttttgtaataaaatcctataccgaagatcatgtacacaagagcataaagtatggtgtctgggccagcactgctagtggtaacagaaagttggatgctgcttatcgtgaagcaaaagagaaagaagccacttgtcctattttcttgtttttctcggtatgatcatttctgtcattgcttgttcttctcttttctattttcatggcaggaaaaaagataaacaataggaaatgaaaatttgtcctttgacttaccatttgattttgattttgaggcagtttttcatgcatgaaatgaatttgaaatttgactttccctataggttaatggcagcggccagttctgtggtgtggctgagatgattggacctgtggacttcgacaagagtgttgattactggcagcaagacaagtggagcggccagtttcctgtcaaatggcacattatcaaggatgtcccgaacagccttcttcggcacatcattctcgagaacaatgaaaacaagcctgtgaccaacagcagggacacacaggaggtaaaaagaccaatacccatgctggcctttttgtagttaaaactaacttcagaatgcaaatttaagctttgctctgtcttggtggttgtctattgactggtcttatctctagcaccaagtaactaaactaacattgtcaactcacaggtgagactggaccacgggctccagatgctaacaatcttcaagaaccatgaggtcgagacaactatcctcgaggatttcgacttctacgagcagcgggagaaagccatgctggatatcagacagcgacagaagcagcagcatactgattccgaggtccagaagccgatggtggaggccaaggaaccagtggatcttatgaaccaaatctcagccacctttgcccgggccgtgcagcttggagaaaccaagggcagcagggaggacaaaccaaaggttgaagatgcttctgctgctgctgttgctgttcctgagaacgagcctgttgctcttgctgagactgaaggattgttagcagattcagagccaagccctttgaaggaaagtggttgatcttacccctttcatgtctgattgcgagaagcagctgggccttgtgatgttcacatggaagcaagaagatcaaaggaggttgatatgtgaaaaaaaaaatgctgcttcttttgtacttcaccataggctgcattataggctggaggagaaggatttggttcacctccagttaggttatgatgttagtcttatgtttccttcccaatttcttctttctgttctgtcatctgttccacaagcgccaccaagaatggtgctcagtggtttagccataaggaaagctgcatatataggccagagctctgtacagtttgcagttaaattatgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0608800, RefSeq:Os04g0608800