Os05g0498300
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Contents
Annotated Information
Function
1.MSH5, a meiosis-specific member of the MutS-homolog family, is required for normal level of recombination in budding yeast, mice, Caenorhabditis elegans, and Arabidopsis. OsMSH5, is its rice homolog. 2.OsMSH5 functions upstream of OsZIP4, OsMER3, and HEI10 in class I crossover formation. 3.We investigated OsMSH5’s roles during CO formation and synapsis and find that loss of OsMSH5 function resulted in a severe reduction in CO formation, which means OsMSH5, similar to its homolog MSH5, plays a vital role in Meiosis. 4.In addition to ZEP1, three other ZMM proteins including OsZIP4, OsMER3, and HEI10, their loading depends on OsMSH5.
Expression
1.OsMSH5is predominantly expressed in panicles. Immunofluorescence studies indicate that OsMSH5 chromosomal localization is limited to the early meiotic prophase I. In wild-type, OsMSH5 foci appeared almost at the same time as OsREC8 signals at leptotene(Figure 4A). number of OsMSH5 foci accumulated rapidly and reached a peak at early zygotene (Figure 4B). At early pachytene, most OsMSH5 foci started to leave from chromosomes (Figure 4C). With the progression of meiosis, however, the number of OsMSH5 foci decreased rapidly and only a few residual foci were observed at late pachytene. OsMSH5 signals were absent at diplotene and could not be detected thereafter.
Evolution
OsMSH5 shows significant homology with MSH5 in Arabidopsis (66% identity and 82% similarity) and is also highly related to the MSH5 in mammals and budding yeast. OsMSH5 contains a conserved ATP-binding motif at its C-terminus (amino acids: 538–746, conserved domains ), and is similar to AtMSH5 lacking the MutS domain I, which is essential for the activity of DNA mismatch repairing.
Labs working on this gene
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References
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Structured Information
| Gene Name |
Os05g0498300 |
|---|---|
| Description |
MutS III domain containing protein |
| Version |
NM_001062483.1 GI:115464696 GeneID:4339215 |
| Length |
11441 bp |
| Definition |
Oryza sativa Japonica Group Os05g0498300, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:24570055..24581495 |
| Sequence Coding Region |
24570338..24570388,24570950..24570981,24571073..24571167,24571361..24571441,24571514..24571586 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:24570055..24581495 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:24570055..24581495 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggacgaggaagaggaggaggagatgtccgagagggaggtcgactcccaggttcatatggcttgtgtaatgcaaggacgcagagttggaatagcatactatgattcaagtatgcaccagctttttgtattggaaatctgggaagacataactgaagattttcctttgattgatcttgtgaaatatcaatccaaaccgagcacaatatacacaagtactaaaacagatgaggcacttttgttggcgttacaacgaaatgattgtaatgatgaggcccctgctgtgaagctcatgaaaagctcaaccttcagctatgagcaagcctggcacagattaatgtacttgaaagtcgcagctatggacgaagggttaagtgtaaaagaaaggatctgttttcttaattccatgatggatcttggaagtgacgttcaagttcgtgctgctggaggtcttcttgctatattagacaacgagaggcttcttgatacccttgatcagatggaaggtggagcatccattgctattgattctgtggcacagatatcattggacaagttcctgaaacttgatgcaacagctcacgaggcgctacagatttttcaagtagataaacaccccagttacatgggaattggaagggctaaagaagggttctcagtttttggtatgctcaataagtgcgtcactcctatgggaaaacatctcttgaggacatggtttttacgtcctataatcgatattgatgtcataaataatcgcctcaatacaatatcattctttctttgctgtgaagatgtaatgtctgcactgcgtgggactttgaagtctgtcagagatattccccacatgctcaagaaattcaactctccaagttcattctgtacaagcagtgactggcatgcatttctgaagtgcatttgctctcttctgcatataaacaagatttttgaagtaggaatatcagagcatttggcaatcaaattacaacatatgaacattgacttggttggaaaggccaattcttccattacagaagagctggattatgtatcagatctggtagttggtgtgattgatgtgcaacggggtaaagaaaaaggctacgacacactggtgaaagacggattatgtgaggagttagacgaactgaggatggtctatgaagaattgcctgattttttggagcaggtgtcagccaatgaaattgcctccttccctttctcatttgaatgcagaaaagctcctctaatcgtctatgtacaccaaataggatatttaatgtgttttttcgatgagaagataagtgatgccttgttgataggacttccagattttgaatttgcgttttctgaggaaggagaggagagaaggttctactatcatactcaaaagacgagagaacttgacaatcttctgggcgatatttaccataaaattcttgacatggagagagcaattataagggatttagtgtgtcgtgtttgccagtttatacctcaactgacgaaagcagtaaactttgcagcagaacttgattgcatattatcgttggcaattgttgctcgccaaaacaattatgtgaggcccatcttaactgaggattccatacttgagatacagaatggcagacatgctttgcaggaaatgactgttgataccttcgttccaaatgacactaaaatccgcagttcaggacgaatcaacataataactggacctaactactcagggaaaagcatttacatcaagcaggtggctttggtggtttttcttgctcatattggaagctttgttcctgctgattctgccattgttggattgacagataggattttctgtgcaatgggcagcaaatccatgacaagtgaacagtcaacttttatgattgatttacatcaagttggaacaatgctcaggcacgcaacatcgagatccctatgcttattggatgaattcggaaaaggcactctaacagaagatggtattggtctgcttggaggaactatcagccattttacagactacgattgtcctccaaaggtccttttgtcaacacatctgacacagattttcacagaaagctacctgccgcagtctgaacatatcaaatgttataccatgagtgttctgaatcctgatgaacaaacagacaacgaagatgtcatattcctttatcgacttgtacctgggcaagcgctcttgagctttggactacactgtgcacagcttgctggtgttccgagtgaagttgttcagagagctgttactgttttgggggacatccactcaaagagacctataaggcgcatggtctgggagaagttagcagcaaaggaccaacaataccaggatgcagtgactaaactgttggccttcgacccacacaaaggtgatctggtcaacttcttccaggaagtttttccgtcctag</cdnaseq> |
| Protein Sequence |
<aaseq>MDEEEEEEMSEREVDSQVHMACVMQGRRVGIAYYDSSMHQLFVL EIWEDITEDFPLIDLVKYQSKPSTIYTSTKTDEALLLALQRNDCNDEAPAVKLMKSST FSYEQAWHRLMYLKVAAMDEGLSVKERICFLNSMMDLGSDVQVRAAGGLLAILDNERL LDTLDQMEGGASIAIDSVAQISLDKFLKLDATAHEALQIFQVDKHPSYMGIGRAKEGF SVFGMLNKCVTPMGKHLLRTWFLRPIIDIDVINNRLNTISFFLCCEDVMSALRGTLKS VRDIPHMLKKFNSPSSFCTSSDWHAFLKCICSLLHINKIFEVGISEHLAIKLQHMNID LVGKANSSITEELDYVSDLVVGVIDVQRGKEKGYDTLVKDGLCEELDELRMVYEELPD FLEQVSANEIASFPFSFECRKAPLIVYVHQIGYLMCFFDEKISDALLIGLPDFEFAFS EEGEERRFYYHTQKTRELDNLLGDIYHKILDMERAIIRDLVCRVCQFIPQLTKAVNFA AELDCILSLAIVARQNNYVRPILTEDSILEIQNGRHALQEMTVDTFVPNDTKIRSSGR INIITGPNYSGKSIYIKQVALVVFLAHIGSFVPADSAIVGLTDRIFCAMGSKSMTSEQ STFMIDLHQVGTMLRHATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFTDYDCPPKVL LSTHLTQIFTESYLPQSEHIKCYTMSVLNPDEQTDNEDVIFLYRLVPGQALLSFGLHC AQLAGVPSEVVQRAVTVLGDIHSKRPIRRMVWEKLAAKDQQYQDAVTKLLAFDPHKGD LVNFFQEVFPS</aaseq> |
| Gene Sequence |
<dnaseqindica>284..334#896..927#1019..1113#1307..1387#1460..1532#2099..2162#2760..2911#3149..3250#3325..3352#3427..3458#3542..3599#3700..3786#4323..4379#4597..4698#4839..4883#5911..5988#6645..6695#6770..6851#7178..7251#7319..7415#7979..8075#8168..8257#8375..8439#8525..8583#8675..8751#8987..9073#9149..9208#9304..9367#10164..10217#10322..10404#10499..10530#10609..10632#10924..11039#11118..11198#aacaacttccttcccgtacaagccagtgcccgagccacgctcccgccgcacttcgcccctcgccgcctagcttgctccatcctccgcgcccgcgcagctgcgctcgccgtcgccgtcgctgcctagcttcctccagcctccgcatctgcgctctatttgtaccgcattctcggaggaggagcaggaggcgaggagccgccgagtagaggagagggggaggcgaagtcggtgctctcgccgggggttgacggtggaactccgggcgagcgatcgagccggcgaaatggacgaggaagaggaggaggagatgtccgagagggaggtcgactcccaggtgcgtattggcccgatccttccgagttcctcgcctcttattgcgccacacggagtagatttctctgcccccccctcccccaccccgctgcaatccgatcgaatcgtgttgccgaaaccccagttccgcgcgatgccgggttctattttattttaaacgaaaatgtcgtgttctagtctggaatgtagcttagtagttgtagacatcagctgtactgcttttacggcaccttcccgagcgtcacacattttccttttatctgatgcggatgcggcgccatgctcagatttggttcaggtgatgcttaggaaaggcgaatcaaacattgctagtttagttgatgatttctgtaatgttgttcattgtacaagcctcaaaccaccttccgaccagatgcacattttgatatgcaaatgcattcctctgtatttctcatgatgagacgaatcgatgtattgagtttaagaggaacagccgaacaggtcctatagctgtagaaaattttgcacgtctttgttctaatgcactgtacgtactgagtgtcaaaggattacatttcaggttcatatggcttgtgtaatgcaaggacgcaggtaaaattttgatgcatacttgatttgttgagtctgagataccactgtttctctatctaacattaatccatgctactttaatgattctcagagttggaatagcatactatgattcaagtatgcaccagctttttgtattggaaatctgggaagacataactgaagattttcctttgattgatcttggtatggtgctcatatgaccacacttataccaactaatttctctatctatatgaaacggaaatttacttgtaatataatgcatttttggtaacaaacaatttacatcatgtccactgtcaactattttgaacacttcgaatagaggaaacatggttatatagctgacaatctgtggtgttttttgctgtcacagtgaaatatcaatccaaaccgagcacaatatacacaagtactaaaacagatgaggcacttttgttggcgttacaacgaaatggtttgaactgcaacaatttctttaaccaatatcttcagttctcctttaatgattttggttaaaatcattcagattgtaatgatgaggcccctgctgtgaagctcatgaaaagctcaaccttcagctatgagcaagcctggcacaggttagcagctctgttaaagtgatacatgcgatttccacaccacataatatgctttacctgattcgcaagaattgataggacttaatacacaaatgctaaattgtgtcgcatgttgcatctgcatatgaaatcaaccacattgatcaagtgagcaatcaaagctaaatgtgcatggtttggaaacttctaaagtactacttcctccgttccacaatgtaaaactttctagcattgcctagattcatatatatgttaatgaatctagatatatatagaaaacatatacattgatcaatggataaatctaggtaaggccaaaaagtcttacaatatgaaacagagggagtattcattaacagaggtgtttggtaacttatgttacataccgcgatcttgtgatgcatagatgttggccgatcccttttcaatgaggaaaccaagaattatcaattccgggaaaaattcattacaagcaacaaccttgtaggctaatagtaccttcacctgtcaatcattatatttctgatgatgtgatgatgaaatatcattgtgtttgtaaatttcagattaatgtacttgaaagtcgcagctatggacgaagggttaagtgtaaaagaaaggatctgttttgtaagtgatttaagtgagattgcctctactcgtttgtacttatatgttttagatcatctacattggcacgagcttaagcatttatgaattattgttcaaactactgctaaagccatatattccttttctgacatttcttcattgtcacatatagcatgcacaatttatgaatattagcatattgcccatgcgttgcaacagaattaaaaaaaataacgtcatcaacccgtttttctatcacttacatatctcatctcttaatttctgatacacctttgagctgataggtggaaccttcggacccacactctcatttacggtgaagaaagtacatgtccattatgctcaattgcatagttagaaacagatcttttatcttcattgtaatgagctgttgagtagcattttctgtgtgaagatctgtttgcatcttccactggacatcctttatttgtctcacacaagttgctgttacactctttctatttccttttctatcactcgcccttctggctcaattttttgtttctgtcactcagatttgtctttcaagttttgttattatgcagtggtaataattttaggatttgtttacagcttaattccatgatggatcttggaagtgacgttcaagttcgtgctgctggaggtcttcttgctatattagacaacgagaggcttcttgatacccttgatcagatggaaggtggagcatccattgctattgattctgtggcacagatatcattttatccttttatccgtaatgatattatacggactaaatgtgctaatgtactgatcagcatgtttttgtggttttactttggaaacaagttagaaagctatttatgtaggattgtaggtactcttcagggtaaagttatatcttgacaatttgttgcatagtgttcgatgcattcttaacaggctggtattctcatgtttttgtgtatttagtattatattccttgacacgctctcagggacaagttcctgaaacttgatgcaacagctcacgaggcgctacagatttttcaagtagataaacaccccagttacatgggaattggaagggctaaagaagggtaaggattttgtctaaaccttgtactttctcatagccatggttctgatttgtaatagtaacaaaaaattacaggttctcagtttttggtatgctcaataaggtaaatgagatatttctcttctattcttcgtttctaccagtttactgattatgttgtggtcttgtggattgtagtgcgtcactcctatgggaaaacatctcttgaggtcactgttactttctataatcatgattgcagatttgcagtaagaatggcattcgtcttaactaattttatgcttcattccaggacatggtttttacgtcctataatcgatattgatgtcataaataatcgcctcaatacagtatccttaatttgttgaatacacatttctcaatttccccaatgctcaataccaaaaaggtaccagtagatttctgaactgtttctcctagacatgctagatatcattctttctttgctgtgaagatgtaatgtctgcactgcgtgggactttgaagtctgtcagagatattccccacatgctcaaggtgctattatctttactctgtatgttacttgtacctccttttcttatcattccccatgttataaaaagagaggtgtgctgaaataaagtaaacaaatgatagtatctcacagtcctctgttgaaaaacagaggttaaacctgccttttgtgttgagtatgttggtgttgcttgtgttttacccttcacataaatgtataaattctgtagttctcttttagtatttggtcattgctcatggctttgttttcttggactcgcacacattgtgagttttgttctcaatgatatatatgttgtcgttgttgtacatataagaaggaacaaagccttgctttttttaagttagcaattattctatttgaagtagaagagactcaagagtaatgttaactgtgaaataattgaatcaacggatcatgataattatatgcttatcataacatgtcgtggttattcttattctctttgagcacacattattcttcttcacagtttttctaatgtgcataactgacattttatatttttctgaagaaattcaactctccaagttcattctgtacaagcagtgactggcatgcatttctgaaggtacctacctgtaatgatgcatatggatctggctattactttataaatgcacaatcactttgaatatgctcctgcgttttccttctcccacttagctattccatatttgaagctctgccctaagtgcaagatacgaagcacccatacgtgcatgattttcttttctttcatttctcttgctgataatatcccttttctttcacttctcttatttcagtgcatttg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