Os04g0614500

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Revision as of 11:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0614500| Description = Aminotransferase class-III family protein| Version = NM_001060397.1 GI:115460523 GeneID:4336982| Length = 5718 bp| ...")
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Gene Name

Os04g0614500

Description

Aminotransferase class-III family protein

Version

NM_001060397.1 GI:115460523 GeneID:4336982

Length

5718 bp

Definition

Oryza sativa Japonica Group Os04g0614500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:31567549..31573266

Sequence Coding Region

31568020..31568150,31568277..31568361,31568529..31568601,31568706..31568803,31568972..31569064
,31569697..31569770,31570095..31570133,31570296..31570384,31570475..31570551
,31570632..31570706,31571054..31571101,31571187..31571270,31571350..31571437
,31571512..31571590,31571688..31571778,31572340..31572418,31572835..31572950
,31573046..31573120

Expression

GEO Profiles:Os04g0614500

Genome Context

<gbrowseImage1> name=NC_008397:31567549..31573266 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:31567549..31573266 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaatttgataaagcatgcagcttttgctgcaagttttcaaggggaaacggattgtacctcacatgcatcagctaggaagttcagcacctcaggatcttcccctctgctagactcaaccgaaggaaatgggtttaagggacactccatgctggcaccattcactgccggatggcactccacagacctggagcccttgattattgaaagatcagagggttcttatgtctatgatagcaaggggaacaagtacttggatacactagcaggattgtggtgtacagccttaggtggcagtgagcctcggttagtgaaagcagcaaccgaccaattaaacaagttgccgttctaccactccttttggaacagtacagccaagccaccattggatcttgctgaggaacttatcagcatgttcactgccaaggaaatgggaaaagtgttctttacaaacagcggttctgaagcaaatgactctcaggtcaaactagtatggtactataacaatgcattggggagaccaaacaagaaaaagatcattgcacaatcacaagcatatcacggatcaacattaatatcagctagtctgtctggcctccctgcgatgcatctgaagtttgatctaccagcaccttttgttctgcacacagactgccctcactactggcgcttcggtcttcctggtgaggcagaagaagaatttgcaaccagacttgccgataatttagagaatcttatcctcaaagaagggccagaaacagttgctgctttcattgctgaacctgtaattggtgctggaggtgtcatccctcctccaaagacatattttgagaagattcaagcagtacttcagaagtacgatgtccttttcatagcagatgaggtaattactggatttggacggctgggaaccatgtttggatctgatctgtacaacatcaagccagatctcgtctccttagcaaaggcactctcatctgcgtatgtcccaattggagcgactcttgtcagcccagaaatatccgatgtagttcattctcagagcaataagattggcttttttgctcatggctttacatactctggccatccagtttcttgtgctgtcgccctagaagctctgaaaatttatcgggaaaggaacatccctgctcatgtcaagcaaatttctccaaggttccaggagggaatcaaggccttcgcgggaagttcaattataggagagacacgtggtgtaggtttgctgctcgcgactgaatttgctaataacaaatcaccaaatgatccatttcctgttgagtggggagttgcgcaaatctttggagcagagtgtaagaagcgtggtatgctagttaaggttgttggagatgagatcgccatgtcgccaccactaataatgagccaaagagaagttgatggactggtgagcatatacggtgaagctttgaaggccaccgaggaaagagtggcagagctgaggtccaagaaaaaatag</cdnaseq>

Protein Sequence

<aaseq>MNLIKHAAFAASFQGETDCTSHASARKFSTSGSSPLLDSTEGNG FKGHSMLAPFTAGWHSTDLEPLIIERSEGSYVYDSKGNKYLDTLAGLWCTALGGSEPR LVKAATDQLNKLPFYHSFWNSTAKPPLDLAEELISMFTAKEMGKVFFTNSGSEANDSQ VKLVWYYNNALGRPNKKKIIAQSQAYHGSTLISASLSGLPAMHLKFDLPAPFVLHTDC PHYWRFGLPGEAEEEFATRLADNLENLILKEGPETVAAFIAEPVIGAGGVIPPPKTYF EKIQAVLQKYDVLFIADEVITGFGRLGTMFGSDLYNIKPDLVSLAKALSSAYVPIGAT LVSPEISDVVHSQSNKIGFFAHGFTYSGHPVSCAVALEALKIYRERNIPAHVKQISPR FQEGIKAFAGSSIIGETRGVGLLLATEFANNKSPNDPFPVEWGVAQIFGAECKKRGML VKVVGDEIAMSPPLIMSQREVDGLVSIYGEALKATEERVAELRSKKK</aaseq>

Gene Sequence

<dnaseqindica>472..602#729..813#981..1053#1158..1255#1424..1516#2149..2222#2547..2585#2748..2836#2927..3003#3084..3158#3506..3553#3639..3722#3802..3889#3964..4042#4140..4230#4792..4870#5287..5402#5498..5572#ggtgccgcgagcgctcatgtgggccccctccttcaagcttccaactgcaacttccccggcgaggcggaggcgccgccgccgcggcggcggcggcggcgcagcgtgagactaaggaaagccgatagatcggcggagtatcgtacgtgtcagcgacggcctgccttcgaaggccgtgtgatcatgttactgaatgtcgatcgcctaatcttgttttcgactgttgattagccaagagggaggggattataggctttcttctgtggtaagacggtctctgattttgttcttccatcagttccatgtcggaagaagtgcatcatgatctctttgggagtagcattctttgcatagaagcttttgttttggtgttcttgttcagaatttcaccttccactgtctgtcatatcacaggtgtaagcttttcatcactgattcatcatgaattccccctcatttgaaaatcaacaggcaatgaatttgataaagcatgcagcttttgctgcaagttttcaaggggaaacggattgtacctcacatgcatcagctaggaagttcagcacctcaggatcttcccctctgctagactcaaccgaaggaaatgggtacactgaaaaaataataatttgttcagcattgatacagctttgtttactgtattactcctttttgcgcaaataataagtcttgaattttttccccccttatatttgagaactgtatttttgtaggtttaagggacactccatgctggcaccattcactgccggatggcactccacagacctggagcccttgattattgaaagatcagaggttgcagactgtaaaccctggcattacattgtttgcttctcttgggatttatcactcaattttgcatcatgaagcttcagatgttattaacttctctataccaagttgaatagtacaatatctctcggattaaattctgtaacgtgtcgattggtgcatatatgcagggttcttatgtctatgatagcaaggggaacaagtacttggatacactagcaggattgtggtgtacagccttaggtatgtccaagttcttgaatctgattttgtgatcaatgtaccagaagactggtgaattttgggatgatgcatacatcttcacaaaccattcatcctgttttcaggtggcagtgagcctcggttagtgaaagcagcaaccgaccaattaaacaagttgccgttctaccactccttttggaacagtacagccaagccaccattggtatacatattgcatctttcattcatgatttgttcatttgtattatctttttttcctttttccaaccaaaaatggacgagaaatgttagtgttggatatcttagtttcattgtaaacagctattaaaattgcaagcattgatgatttaagctttgttgttgctttcaggatcttgctgaggaacttatcagcatgttcactgccaaggaaatgggaaaagtgttctttacaaacagcggttctgaagcaaatgactctcaggtaggattgttatcgttgtcaattttagtgagtgaattctgggattgaactattgcactgacttccctcgagggcaatatattgtgtacaagatgaatgtgcaatgaccaaaatacccctatcacaatacaccattacactaatatccttaacaatcgtaacatatgtttccatgtagccttttcgtataacatttttcgcctggccgaccaaatttcatcaagggaaaggagtatttacaaatgtatttctgagaacatgcaggagagttgtgcatcattgcattaagaaacgtctcctgtagttttagtacagctagcttacactttacacacaaatacacaatattacagatggtgtagcttttactggtattgtggaattttgcatggtgtgcacattgttcaaagatttcaccctttcatgagtagtataaaaaaaggacaaaatttcatgagtattatagttactgttgttactacttagtttattggttatactttctggtacacgactatacttagtttcatgataaacacacattgttctcgctacaacaactgtttggtatattcaactgatcttcccatgatgttattttacatacacaaaaaatgttttatcttttgcaggtcaaactagtatggtactataacaatgcattggggagaccaaacaagaaaaagatcattgcacaatcacaagcgtaagcagataacatctcttctttgtcttcatcataactacctcctagttacttcacattgcatgccaatgggtactttccactcaggggaatagagtgcaggcaggtgaaatctgatctacatgtatagtgtagagactactctgttttcatattcatattgtagagactattatgttaatagatctccaaacagtaatttccataggcaccaatgtttgtcccgtctcattgttttcgatattcttgagatctcatctttaacttacatgaaatcttgaggcattttgaatgtaattctcactgcccataagctttctgcagatatcacggatcaacattaatatcagctagtctgtctgggtgagtgttgtgtcttacagaaagaaatagtttgccttcattatccataaaatttgtcttttagaaccctctagaattgtttcaactaaatctttatagttctttagttcatcgtttgttgatacttgaaataatatactaatgtattctgcatttttttagcctccctgcgatgcatctgaagtttgatctaccagcaccttttgttctgcacacagactgccctcactactggcgcttcggtcttcctggtactattatatatatgtagtagttctgaaagtgtgttatatgaggagcccagcatattttgctaatgaaatgattttggtgggaaacaggtgaggcagaagaagaatttgcaaccagacttgccgataatttagagaatcttatcctcaaagaagggccagaaacagtaaagttctctacataccaaaacttacattttatcggcacagccaaattttactgacataatttttgttcacctatcaggttgctgctttcattgctgaacctgtaattggtgctggaggtgtcatccctcctccaaagacatattttgagaaggtcggtacacatgttatatattttaatttgtaccttctggctagaaaataaaaccttttctaagttcagtaatttggagccattttaaaagttccactctaggaaagcacctttgatgcagtagcggagttttttttttgaaaggtcaggccgttgccgacattttatataaagaagaaaatgtcccatttcaagaagaaaacggaaccaaacctctagtgtttgactaagcattggctatggctcaaaactctagtgtttccagagctacatattctcagcatgcaccaaatgcttgaatattgtactgcctattcaccgtgtgctattatgttgccaaccaacagattcaagcagtacttcagaagtacgatgtccttttcatagcagatgaggtatgttaatatcctactgagtccaacataaaacggcgaaacaattattttcttctaagagctgttcacttgtcatccattccaggtaattactggatttggacggctgggaaccatgtttggatctgatctgtacaacatcaagccagatctcgtctccttagcaaaggtgagtgagttcttctaacaactgaacaactgttaattaagctgaagttgtacgagttatgccaatttcaccatggtaggcactctcatctgcgtatgtcccaattggagcgactcttgtcagcccagaaatatccgatgtagttcattctcagagcaataagattggtaagtcaatgccattttatgaactcggtctgtcagtacattggcatgtcctgaactgttgttttgttttataggcttttttgctcatggctttacatactctggccatccagtttcttgtgctgtcgccctagaagctctgaaaatttatcggtatattgaaacttcctttagcattacatggtgcacttgttcttactggcaatggaatttccagttcctgataaatccttcatgaaactggtcttagggaaaggaacatccctgctcatgtcaagcaaatttctccaaggttccaggagggaatcaaggccttcgcgggaagttcaattataggagaggtaatccatttctatgtccaaaacattcaaataaaaatccccttcaatcatgtcagactttgtacatacttgtgtggtacttatgtgaacagtaaaacctccaatcttaggccctgtttagttcccagcaaaaacttttcaccatgtcatatcgaatgtttgtagttggacacatgcatggagtatttaatatagacaaaaaaaactaattacacagattgcatgtaaattacgagacgaatcttttaaacctaatttctccatgatttgataatatagtgctacagtaaacatttgctaataacggattgattaggcttaataaattcgtctcgtggtttacaggcaaaatctgtaatttgttttgttattagtctacgtctaatacttcaaatatgtgacacgccgaaacttttcaccctgaaaaaagttcgcacttaatacaaaaatatgcactttcgcatattcccgggaaaaaaataagttcctcctagtacaatcatgtcagaaagattacatttgatttactcaagcacataactgttgaactcttgtatgcagacacgtggtgtaggtttgctgctcgcgactgaatttgctaataacaaatcaccaaatgatccatttcctgttgagtggggtaagcaatagtaatgatcattgcatgttcttataatcagtagatttgggataagaattgcacattatcttatatctattcacttatagttgcaaactaattcctccgtttcacaatgtaaatcgttatgctagaacgacttacattgtgaaacggagggagtacttaacctgaagaattatggtattttaccatcttatataccacggtttaaccaaaacgtcaccacgacaaatgatttacatggaacaaataaaatttaagggaaattatagtgtaaaacttgagaagctgaaaatgtaccaagagctactaggtaccttaagttacaaatttttttagtgcaaaattttatacctatagttacttcctcaattaccataaaatttctcaaaagttagtgatattgtttccaggagttgcgcaaatctttggagcagagtgtaagaagcgtggtatgctagttaaggttgttggagatgagatcgccatgtcgccaccactaataatgagccaaagagaagttgatggagtaagatcctatttcacaataccatcatatttccttaactattttctcgtcatagatgaaaatagcattaatctgtcatactcaactgctttcagctggtgagcatatacggtgaagctttgaaggccaccgaggaaagagtggcagagctgaggtccaagaaaaaatagttaagagacatttgttgtaaaaataatgataatattaccaacaatttttgtaagctggtgcacacaataattttgtgttgttttttattctaataattcgctgaaatgttacttcttgcaaataaaatgtgatattttatttttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0614500, RefSeq:Os04g0614500