Os04g0615100

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Revision as of 11:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0615100| Description = Similar to Lecithine cholesterol acyltransferase-like protein| Version = NM_001060402.1 GI:115460533 GeneID:4336987| ...")
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Gene Name

Os04g0615100

Description

Similar to Lecithine cholesterol acyltransferase-like protein

Version

NM_001060402.1 GI:115460533 GeneID:4336987

Length

4433 bp

Definition

Oryza sativa Japonica Group Os04g0615100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:31613673..31618105

Sequence Coding Region

31614105..31614339,31614762..31614853,31615237..31615355,31615535..31615670,31615775..31615826
,31615994..31616094,31616204..31616384,31616478..31616637,31617070..31617124
,31617231..31617284,31617391..31617807

Expression

GEO Profiles:Os04g0615100

Genome Context

<gbrowseImage1> name=NC_008397:31613673..31618105 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:31613673..31618105 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgtgctggaggatttgatcagggcgattgagctctggctgcggattgctaaggagcaggtacccttggtggatccaacccttgacccggttctgcttgtccccggcataggcggctcgattcttgaagccgttgatgaggccgggaagaaggagagggtgtgggtgcgcatcctcgctgcggatcatgagtttcgagcacatctctggtccaagtttgatgcttccactgggaaaactgtctctgtcgatgagaaaacaaatattgttgtccctgaggatagatatggactatacgctattgacactctggaccccgacatgatcattggcgatgatagtgtttgctactatcacgacatgatagtgcaaatgatcaaatggggataccaagaggggaaaacattatttggatttggttatgatttccgccagagtaacaggctttcagaaacacttgatagattttccagaaagttggagtcagtttacatagcttccggagaaaaaaagatcaatctcattactcattcaatgggaggattgcttgtcaaatgcttcatgtccctccatagtgatgtcttcgagaaatacataaagagttggattgcaattgctgcaccatttcaaggtgcacctgggtacataactactagtctgctgaatggtatgtcttttgtcgaaggatgggagtcaagattctttatttccaagtggagtatgcagcaattgttgctcgaatgcccatcaatttacgaattgttggctaactcgaccttccaatgggaagatactccatatctgcagatctggagacagaaattggatactaatggcaagaaaagtgccatgttagagtcatatgagccagatgaagcaataaaaatgattagagaagctctttccaagcatgagatcatttctgatggtatgcacattccattgccccttgatatggatatattgagatgggcaaaagagacacaggatgttttgtgcaatgcaaagcttccaaaatcagtgaagttctacaatatttacggaactgattatgacactgcccataccgttcgctacgggagtgaacaccatccaatttcaaatctcagtgacctcttgtatactcagggcaactacatctgtgttgatggtgatggatctgtccctgtagaatcagcaaaggcagatggcctcgatgcagtggcaagagttggggttgctgcagaccaccgaggaatcgtctgtgatcgtcacgtgttccggataattcagcactggctccatgccggtgagcctgacccattctacgatcccctcaacgactacgtcatactcccaacagccttcgagatcgagaagtaccacgagaaacacggggatatcacatcggttagagaggactgggagatcatctcccatcgcgatgacgaaagcaagaggccagccgagcttcctcctatgttcaacacgctatcggcgtcccgcgagggtgaagacggctcgctggaagaggcgcaggcgacgatctttgttcatccagagagcaaagggaggcagcatgtggaagttagggcagttggagtcacccatgacggctag</cdnaseq>

Protein Sequence

<aaseq>MAVLEDLIRAIELWLRIAKEQVPLVDPTLDPVLLVPGIGGSILE AVDEAGKKERVWVRILAADHEFRAHLWSKFDASTGKTVSVDEKTNIVVPEDRYGLYAI DTLDPDMIIGDDSVCYYHDMIVQMIKWGYQEGKTLFGFGYDFRQSNRLSETLDRFSRK LESVYIASGEKKINLITHSMGGLLVKCFMSLHSDVFEKYIKSWIAIAAPFQGAPGYIT TSLLNGMSFVEGWESRFFISKWSMQQLLLECPSIYELLANSTFQWEDTPYLQIWRQKL DTNGKKSAMLESYEPDEAIKMIREALSKHEIISDGMHIPLPLDMDILRWAKETQDVLC NAKLPKSVKFYNIYGTDYDTAHTVRYGSEHHPISNLSDLLYTQGNYICVDGDGSVPVE SAKADGLDAVARVGVAADHRGIVCDRHVFRIIQHWLHAGEPDPFYDPLNDYVILPTAF EIEKYHEKHGDITSVREDWEIISHRDDESKRPAELPPMFNTLSASREGEDGSLEEAQA TIFVHPESKGRQHVEVRAVGVTHDG</aaseq>

Gene Sequence

<dnaseqindica>433..667#1090..1181#1565..1683#1863..1998#2103..2154#2322..2422#2532..2712#2806..2965#3398..3452#3559..3612#3719..4135#atggctgccctgtcgtccacgcgaccgaagaagcaaggcaagccctagccgccactcccgatttgcttcccagcccttgcggctcctgcgattcgatttggcgggaaattgctcgcgctctcgctcgcgccatcggttcttgaatcggagggattgggagcgggggggaaggtttcttgctttgcagccgaatcttgactggtccagtttcgtgacttacctagtgcccattcttcccgtttgagatttagaagcaagctttggatgaaaagcatcatctttagcttctttgatttgttgggtgaagggggctctcaattctttcgagccattgctgctcattcgagagctatcctttcaccggttggattggaggagctagtccataaatttgtataggaatctgaggaaagggcgctctttacggtgcccatggctgtgctggaggatttgatcagggcgattgagctctggctgcggattgctaaggagcaggtacccttggtggatccaacccttgacccggttctgcttgtccccggcataggcggctcgattcttgaagccgttgatgaggccgggaagaaggagagggtgtgggtgcgcatcctcgctgcggatcatgagtttcgagcacatctctggtccaagtttgatgcttccactggtatgaaaaaaaggagaaaaagaactgataaatgcgatgcctgttctgacttatgaatagtgtacacttagctgttttacatttatttgttagaaatatcaagtagagtagagaatggaaattggaatgcttcatatattagaatgggtggtatactttgataaattgcagggtctttcagtaagacgcagaagctgaaaatatatgataattagaggacaaacatctagagatttatatcttgtttgcgtagacaattagggaactccatatggttttgttgcctttaatttagttcttaaacaactgctagatggtcttcacggatggcctgctgattttccaccttcattcctttgtactgattcagtatagtattctctttctgtgtcatttgattccaaattattctcatggagcagggaaaactgtctctgtcgatgagaaaacaaatattgttgtccctgaggatagatatggactatacgctattgacactctggaccccgacatggtaaaacattatttcatatatttggttaaagctctaccttttactgttattaatttccaaaggttcctttaaccatcgattatattcaattctgtttaacttctgtctattaccttccactccgcgactgccatatcagtattgtttctatttagtgattccttgccggaaacattcacagaccatcctattcttgttaaaatagccactagtgatgattttgtgtattgtctttctgatggctgaacaataacttgcaagtgcttacactctttaaagccaatttattgtgaacctgtaccttcacagctcaacaaacgcaaatcatatactgcagttgcatacctgatctgcaccacttatattacaatttgaattagcagatcattggcgatgatagtgtttgctactatcacgacatgatagtgcaaatgatcaaatggggataccaagaggggaaaacattatttggatttggttatgatttccgccagagtaacaggtgaattgtgcacttctattcctgttttgcacatacagttctgtttatactttacaattctttagtgtttgctcaactgtgctattataattatttatgaacacacttgtgaagttgatcattctttctgttggtagaagtgagttaacagttctctttttaattctcctttggctcaggctttcagaaacacttgatagattttccagaaagttggagtcagtttacatagcttccggagaaaaaaagatcaatctcattactcattcaatgggaggattgcttgtcaaatgcttcatgtccctccatagtgatgtgggtatttctctgtatattttggatctttacctgagatttgtcatgctcagcatcttcgctacctgaaactgcaaggctataatgttgctccctttctataggtcttcgagaaatacataaagagttggattgcaattgctgcaccatttcaaggtactgccttttggggccccttaatttttaaagaaagaaatagggagattatcacatatttgtgtgttttagtattacatgatgattatattctgtacatgataatctattaccttcaatgtatgggagcaactttacatggcaaacaacttgctactctatgacaggtgcacctgggtacataactactagtctgctgaatggtatgtcttttgtcgaaggatgggagtcaagattctttatttccaagtggagtatgcagcaattggtatgttttggtagccatacattgatcctgtcctcaaatatgttcatgcagatgacattacttttgtcttacaaacaaagactgaaactgtttcttttttttgcttcagttgctcgaatgcccatcaatttacgaattgttggctaactcgaccttccaatgggaagatactccatatctgcagatctggagacagaaattggatactaatggcaagaaaagtgccatgttagagtcatatgagccagatgaagcaataaaaatgattagagaagctctttccaagcatgaggcaagtcattttatttatacatttacattgcaatataatttacccaatataataagctgttttcgaaaaaaaaatgatgttggtatattgcagatcatttctgatggtatgcacattccattgccccttgatatggatatattgagatgggcaaaagagacacaggatgttttgtgcaatgcaaagcttccaaaatcagtgaagttctacaatatttacggaactgattatgacactgcccataccgttcggtaattttcctatctggacacctgtaattttagtttatcttttgcttccagaccaatcagaatctggcattggttcaacttaattagatgggctcatgaatttatgtacataaatggctcaatagataggaacaaatgagaacttcatgcttacatcatgttagtagtgcttaactcaagttcaaaattgcttgttgcaatgcaattgagtgcttctctctctatccattgtgcaaagtaggatatggttgtaaagatgtgtttccatttaaatgcagcaaggaactatgcagtcaagttaaactaaagatttttatgttgatagaaatatcccccaaaggcatgataacaccatctctgcatggtgtttactacataactaaaagtttagtactgtatgtgtcaagttactaatacccacatctttcgcagctacgggagtgaacaccatccaatttcaaatctcagtgacctcttgtatactcaggttagttcaattggtaaatgctactatgaataccaattttgtggctctgtggagtacaaaataatcccactggttttgtgcgttaactatgttttacttcattcagggcaactacatctgtgttgatggtgatggatctgtccctgtagaatcagcaaaggtatgatattattagtgttttggttgaaaatttctttcaaaaagaaaaaatgaatcaggagaaaagtttacattgagaaaattgagaaccatcaacgactttgcaggcagatggcctcgatgcagtggcaagagttggggttgctgcagaccaccgaggaatcgtctgtgatcgtcacgtgttccggataattcagcactggctccatgccggtgagcctgacccattctacgatcccctcaacgactacgtcatactcccaacagccttcgagatcgagaagtaccacgagaaacacggggatatcacatcggttagagaggactgggagatcatctcccatcgcgatgacgaaagcaagaggccagccgagcttcctcctatgttcaacacgctatcggcgtcccgcgagggtgaagacggctcgctggaagaggcgcaggcgacgatctttgttcatccagagagcaaagggaggcagcatgtggaagttagggcagttggagtcacccatgacggctagtcaagccagtcatacgaaaacacacggttgtcaactagctagtctgcacactccaaagcaaagtggacaatgtaaatataagacgtccctagctatgaactacgtgtaattttgctgccttgtaaataccagaactgaaaatatactgccactggatgatgatacgaatagaaaggagaaagaaaaggatgaacttgatatgttaaaattgtatcaggtgcttgaaatgttgttactggaaactgatcatcctgactcggttgatcaagcgatgagacctccgagttatcattgtctt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0615100, RefSeq:Os04g0615100