Os04g0617800

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Revision as of 11:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0617800| Description = Similar to Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19) (IGPD 1)| Version = NM_001060422.1 GI:115460573 Ge...")
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Gene Name

Os04g0617800

Description

Similar to Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19) (IGPD 1)

Version

NM_001060422.1 GI:115460573 GeneID:4337007

Length

3666 bp

Definition

Oryza sativa Japonica Group Os04g0617800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:31788209..31791874

Sequence Coding Region

31788293..31788500,31788692..31788819,31789615..31789719,31789969..31790061,31790523..31790597
,31790903..31790965,31791156..31791265,31791429..31791456

Expression

GEO Profiles:Os04g0617800

Genome Context

<gbrowseImage1> name=NC_008397:31788209..31791874 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:31788209..31791874 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaccaccgcgcggttcgtctccccctccctctcgcgcgtgtccccctcgccggccggccgagtctccgggtcgtcgtggttgtccagggctggggtcgccctccccgctcggccgcacggtctctcgctccacctgaggccgcctgctatggcctccgccgccgccgccgggaacggctctccttccgcgccggaggactccacagcgttgtccaggataggagaagtcaagagggtgaccaaggagacgaatgtgcatgtgaagatcaacctggatggcactggtgttgccgattgcagcacagggatacctttcttggatcacatgctcgatcaactggcatctcatgggctctttgacgtatgtgttaaggcaaagggtgacactcacatcgatgaccatcactcaaacgaagacatcgctttggcaattggaacggcactacttgaagcacttggagatcgaaaaggaattaatcggtttgggcattttacagcaccacttgatgaggcagcggttgaggttatactggatctatctggtcgtcctcatttgagttgcggcttaagtattccgactgagagagttggcacatacgatactcagctagttgagcactttttccaatctcttgtgaatacatctgggatgacacttcacatccgtcagcttgctggaaaaaactcacaccatattattgaggcaactttcaaagcatttgctagagcccttcgacaagcaacagaatatgacttgcgccgacgcggcactgtccccagctcaaaaggtgtgttgtcaaggtcatag</cdnaseq>

Protein Sequence

<aaseq>MTTARFVSPSLSRVSPSPAGRVSGSSWLSRAGVALPARPHGLSL HLRPPAMASAAAAGNGSPSAPEDSTALSRIGEVKRVTKETNVHVKINLDGTGVADCST GIPFLDHMLDQLASHGLFDVCVKAKGDTHIDDHHSNEDIALAIGTALLEALGDRKGIN RFGHFTAPLDEAAVEVILDLSGRPHLSCGLSIPTERVGTYDTQLVEHFFQSLVNTSGM TLHIRQLAGKNSHHIIEATFKAFARALRQATEYDLRRRGTVPSSKGVLSRS</aaseq>

Gene Sequence

<dnaseqindica>85..292#484..611#1407..1511#1761..1853#2315..2389#2695..2757#2948..3057#3221..3248#acgcaaggcagtccacaccacccgaatcccctccactcccccgcggtcaccggcggcgccggcggcgagctctcgccgacgccgatgaccaccgcgcggttcgtctccccctccctctcgcgcgtgtccccctcgccggccggccgagtctccgggtcgtcgtggttgtccagggctggggtcgccctccccgctcggccgcacggtctctcgctccacctgaggccgcctgctatggcctccgccgccgccgccgggaacggctctccttccgcgccggaggactccacaggtggattctgcgtcgtcgattaggcttttgttctgttgcgcttcatgtgatttgctaccatgctatgcttgacatctccactagcagtaggcagtagcagtagctattccaagagttcttactctcttttgtgaaagctaatcctatttaatttgattttttaaactctggtttgtgttcggaattctcagcgttgtccaggataggagaagtcaagagggtgaccaaggagacgaatgtgcatgtgaagatcaacctggatggcactggtgttgccgattgcagcacagggatacctttcttggatcacatgctcgatgtaagtatggttttcctgtggcagcgattgtgaatgaggatttctcctatatagatagaatgtgcttgtatactgttgtgtgtagaaatgtttggtttttgacttaggggcttgtctaaagcaagaatatcagttgaaccattcgaagaggaaaagcaattgcttagtgcggaaggggaaacaatacctattaaactaacgaaaacatcttaggtcaaatccactaaatggttgaatagacgctcttaagttgcattcacttcagacgtttttgagtgccactggtgcaatcttattattgttgggagaaagtgatgtgttggggccattaaagcctgaataggtcctacttggaaaaaatctgccgcttttcaagttccacgtgttttagctgctgttcgctaagaactgttctatcaagcaattagttcactatttgggaaatgctatttagttttgttttcctggtatgatgtgatacatgtaacttccacctattaactcatgtatggctttggttattccacgagcatgataaatgaccacttcatgtgaccaagtcctttaacctcgaatcaatatttcaagagaaatcacgcaaaattatcaacatcagttgcgtgtagcaaattgccagcgcttcattcgaaagaagtgtttttgtctagttttctgcattttgaatggttctactattgtatatgtttctcttgtaggtaccagtctttacacatgctgcataaatatgctcttttagtcaaatctggccattaattctgtgtctataacttacagcaactggcatctcatgggctctttgacgtatgtgttaaggcaaagggtgacactcacatcgatgaccatcactcaaacgaagacatcgctttggcaattggaacggtaattgttgctttcaccttatcatttctgcttctagaaatacttgtaggatcattatgaattgaaggttagggtatccataatttcatacttcttttcccccttcatttgtgcaaaattgaacgcgttatcaacacactatttacattgttgattgcatgctgaatcatcagtactgtaaatgtctgcaagctgtgtaggtaagcaaaacgtctagtatgattgcttttttatttttggtacttgtaggcactacttgaagcacttggagatcgaaaaggaattaatcggtttgggcattttacagcaccacttgatgaggcagcggttgaggttatactggtacatgctatcatcctggcattgcgtttacatactgcaaatgtatatacttccctgcatttctacgtttgtattcatgtggccataattctcttatgccatgcaagcacataattgagttagagtcctgcaattagtcatgaagtttttaatgatattataattgtcatgagtatctatcgttctggtttactggcccatctgcactaatggcatttgaacacttgcactgaatggtaatgtttttgtagcacagacccatctatcacactataacgtcattagcaagaagatgactgcagtcatctggcctttgtcatatatacaccaattatttgccattttgggttcatcttagcttaattttttttgttagtgcggatatccatgtctaccacttcatcagtcaggctaattgataatgtgacttactctattatttactattcccccatatctaggatctatctggtcgtcctcatttgagttgcggcttaagtattccgactgagagagttggcacatacgatactcaggtaattcctgaaattatgtagctattatcctttttttttgggaaaaacttgtgatggtttcttttcgtcatgccagatccaatatggcttatccttaatcgtctaatgtgacatggctattgggttgtcttgcatcattcgtattcatcctctgacgttcttcctatcattggacaattctttttgatgaaatatttaaataatacttcttttttttttatcatcgatgccatgctatcttttcagtcatgtatactcctgctatcatcttagacagctattgatttattcactttgatgaccagctagttgagcactttttccaatctcttgtgaatacatctgggatgacacttcacatccgtcaggtacatattgctttgcttcagatcaaatttccatccagtgttggatcattattacaagagtgctgtttggcactgaataaattgcatccctagttgaacataagagtcaatctttgcttttcctccagttaagcgagctaagaagtacgtatatcatacctgagcctgccttttctttgctcttatgaagcttgctggaaaaaactcacaccatattattgaggcaactttcaaagcatttgctagagcccttcgacaagcaacagaatatgacttgcgccgacgcggcactgtccccaggttcgttttagcttattgcaaatagcgtttaggaaattctatgttgtgcccaactacactgttgatgcctgattcaaaaacttcacacctgctaagcatatggtttatctctgacctttgctgatattgaaacattaacgtatctttcttgacttgatcgcagctcaaaaggtgtgttgtcaaggtcatagtgttgcaggtttggaaaacaaggggtgcatgctactgttccttgtagattgcaatattcaaaggaaacaaatggaatggcctctacagctcctcgagtcctacttaccctgggaatctccgttggttgcgataacagaacatgaagccattgctaactagatcaccaaaaaaggaacaaatttagcactgttctcatgatctattcttctgtaacatttagcattcgaaataaacatgtccggccgttattgcaattttggatgctagatgtcttgagttgtcatctgtgttgtccatcaaacggcgtgtctagcagctcagtttcactctgtatgagttcagagttggtcatgttgctgaacctctgtattttcaagggaataaataagttttgcacctacgtttctgccagactcc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0617800, RefSeq:Os04g0617800