Os04g0626900

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Revision as of 11:29, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0626900| Description = Conserved hypothetical protein| Version = NM_001060485.1 GI:115460699 GeneID:4337073| Length = 4876 bp| Definition ...")
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Gene Name

Os04g0626900

Description

Conserved hypothetical protein

Version

NM_001060485.1 GI:115460699 GeneID:4337073

Length

4876 bp

Definition

Oryza sativa Japonica Group Os04g0626900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:32293834..32298709

Sequence Coding Region

32293880..32294005,32294116..32294262,32294593..32294684,32294778..32294874,32295152..32295195
,32295327..32295415,32295702..32295793,32295885..32296031,32296116..32296263
,32296355..32296431,32296900..32296971,32297155..32297200,32297355..32297484
,32297566..32297725,32297825..32298026,32298261..32298310

Expression

GEO Profiles:Os04g0626900

Genome Context

<gbrowseImage1> name=NC_008397:32293834..32298709 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:32293834..32298709 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcttcgccggagctcgccgccggcgatggcagctacaacttccacctccgctccctctccgccgcatccagggactccgccgcggccgccgaccccgcctccgaccccatcctcctcgaatccgtaaggagggtgtgcgagatgtgcaagaaggccaaggggcccagcgacgagatggtggcccgggcgttccctgtgatgagcaagctgttccagcgctgcgccgccgcgccgacccaatccgtggcctccagcggcgtgctgctactcaccattctgcagttcttcctggactttggggaggcagtcctgcatgatgctgatggtagcttgaggaccttcttccgctcttgcctaagtagggagttcgctgatcctattgtcgcagaacgtacacttgaattcctgatagcgaataagacaaagatcctgagctcttttcccacattaattccacagttttttccattgttgctgaagctaattgcatcaaatggtgagagattggagaggaagttctcagaagtgcttccgttaatgatgtcagcaggatcttttcttcctctcttcctgtcccttatggatcttccaatgttagtggtagcattggaaaaggtggaaagaagttctggaactctcatcggtagtagtatagctactatacagaagagtgctgctcctgagatgctacttgcactaatggatgaagcatacactggttctgctatagaagatgccattggcaatgcaggttcggatgatagtggtcctctagaccttgctgacccgatgttccttgatcttctaaaagatgagaatgatggtattgctgcaaaacattggacatctcctacgatatcttcaaccttacaggcagcagttaatagcccacaatcggacagattgaaacagtcactgaaaatggcacctcgttttcttacattatattttgctacagcattgcgggacgttaacgactcactcctatgcgctctgattcctgtagttatgtcaagatatgcagcaatgttccctgacaaagtatactccttcgaggtgaggaaaagactttcagatttcatattggctgcattccagcgctcccctgacatcattgcactgctaaagaagcccattacagacagactaggggaggctcacgataatcctgcaaagactgaattagcattgcatttgtgttgggccattggtgagcatggagctggaggaaaaaatcgcaaagatgtagctcgtgaactgtttgaaaatttggagttgctgttatatgaaaatctggctaccagtcgtttgggattaagtcaggacacaggatttgatcctatgggtgcatcttctagaaaatcatctcaagctaggctcctctgctttgtggtgactgccatagcaaagctagcaacgttccataatgagttgcttccaagagcacgtgtatcattggccaaggtcgctcgttcccgaacctcggacaggagagtgtggcaacgtgcttgtgactatttaggtctattgaatgaaccggccatttgtttatctgtactaggaccatccaccgcacaaggaaatggtcctggtattgtcaactggagtgaaggaggaacaaagatggtagctcacattccgttctacctgttagctgaacaaaaaggtgcaccgatccatgatttttcgtttgacgatctcgtccccacggaatga</cdnaseq>

Protein Sequence

<aaseq>MASPELAAGDGSYNFHLRSLSAASRDSAAAADPASDPILLESVR RVCEMCKKAKGPSDEMVARAFPVMSKLFQRCAAAPTQSVASSGVLLLTILQFFLDFGE AVLHDADGSLRTFFRSCLSREFADPIVAERTLEFLIANKTKILSSFPTLIPQFFPLLL KLIASNGERLERKFSEVLPLMMSAGSFLPLFLSLMDLPMLVVALEKVERSSGTLIGSS IATIQKSAAPEMLLALMDEAYTGSAIEDAIGNAGSDDSGPLDLADPMFLDLLKDENDG IAAKHWTSPTISSTLQAAVNSPQSDRLKQSLKMAPRFLTLYFATALRDVNDSLLCALI PVVMSRYAAMFPDKVYSFEVRKRLSDFILAAFQRSPDIIALLKKPITDRLGEAHDNPA KTELALHLCWAIGEHGAGGKNRKDVARELFENLELLLYENLATSRLGLSQDTGFDPMG ASSRKSSQARLLCFVVTAIAKLATFHNELLPRARVSLAKVARSRTSDRRVWQRACDYL GLLNEPAICLSVLGPSTAQGNGPGIVNWSEGGTKMVAHIPFYLLAEQKGAPIHDFSFD DLVPTE</aaseq>

Gene Sequence

<dnaseqindica>47..172#283..429#760..851#945..1041#1319..1362#1494..1582#1869..1960#2052..2198#2283..2430#2522..2598#3067..3138#3322..3367#3522..3651#3733..3892#3992..4193#4428..4477#atacgtccccatctgtaaactcactcgttcgtcggaggcgacggccatggcttcgccggagctcgccgccggcgatggcagctacaacttccacctccgctccctctccgccgcatccagggactccgccgcggccgccgaccccgcctccgaccccatcctcctcgaatccgtaagcgcatctctccgcaaccctggccccttccatggtcttcgaatcagggggggtggcatgtgctcacgttttggcttgttgactcgtgtgggctttgcggcgtgaaggtaaggagggtgtgcgagatgtgcaagaaggccaaggggcccagcgacgagatggtggcccgggcgttccctgtgatgagcaagctgttccagcgctgcgccgccgcgccgacccaatccgtggcctccagcggcgtgctgctactcgtaagctgtgcttcgattcactgatgtgaagtttttcccccatcttggctgcaaatggttgttattcttacatgttaggttggaggacgatatcgttgcaatgttttggtagttttgtgaaatgtttgcatctttaggggcgagcttgctctaatgttaatggttaaccttatgatccccatttgaccccatataatcattctctgtggacaattgttggtgaatagaatcatttagatttgattagtaatgtacacacatttttagtcatcatatatttgaagaaaaacctgtctaataatacatactgtattactgctccctacccagaccattctgcagttcttcctggactttggggaggcagtcctgcatgatgctgatggtagcttgaggaccttcttccgctcttgcctaagtaggtaataatttttcttgatgtattgggtatgcgattgtttatttttattttcctgcttaccctcaatcacttggctattctttcttgatgatagggagttcgctgatcctattgtcgcagaacgtacacttgaattcctgatagcgaataagacaaagatcctgagctcttttcccacattaattccacaggtgccataccatataatgttatacagcactagaattatcaaaatatctacatcttatgtcaactaccattctttatattgtcagttagaattttttttgcataaatgtagctctaggcttctactggcaagggccaatgaatcaagcatacttcttgaaaagatctcaatccaatttcctcctttcttttttgacttttctgttttgttctctttccaaattactatttaatgatgttaatatttggcaatgctttcgtgatgctgtctatgtgcagttttttccattgttgctgaagctaattgcatcaaatggtgagaggtatgccatcttaattgctcatgaactcctcacatatttgctgatattttactgtgtaaatatgaagaagttcattctacctctttccagcaatgatttgacctatctaacttgggtttcctttgttttagattggagaggaagttctcagaagtgcttccgttaatgatgtcagcaggatcttttcttcctctcttcctgtcccttatggatcttccaagtaagccttctgattccagacttccagaattttcctctagcttctttagattgtgcaaggctgtaaacttcatgattttagaagctaattagccaagtttattatgatagtgttattaaactgttgcatgtgctgactgctgacatctggggcacatctcttccaacatgcgagatgcatgtaatgtgtataacatgctgctactgaggatgcttatcctgtactattatgctttttttactaattggtgtcatttgttctattgcttactcatggaacaaaacagtgttagtggtagcattggaaaaggtggaaagaagttctggaactctcatcggtagtagtatagctactatacagaagagtgctgctcctgaggttgatttccgtaatgatttgacctaaaagctgtaaatgaaatgtcacctatcaaaactaataagcttgctaatctttttctatcgtacagatgctacttgcactaatggatgaagcatacactggttctgctatagaagatgccattggcaatgcaggttcggatgatagtggtcctctagaccttgctgacccgatgttccttgatcttctaaaagatgagaatgatggtattgctgtaagtagttccttgaagtatgtgttccatgttcttcagtgaatgccttgatctagtcttctcattttctgatgttttcctcaggcaaaacattggacatctcctacgatatcttcaaccttacaggcagcagttaatagcccacaatcggacagattgaaacagtcactgaaaatggcacctcgttttcttacattatattttgctacagcattgcgggacgttaacgactgtatgttgcctatctttgttaattgctatacatactgatgagtgatgaccaacatattgttgatttgaccctctactatttgtcacttcagcactcctatgcgctctgattcctgtagttatgtcaagatatgcagcaatgttccctgacaaagtatactccttcgaggtaggcaagtgggtgtccttttcccattgcgtctaatactgcgtctaatactggagtagtaactacagtactacggtaagatcattgaagtgcttacttgatgattgaaccgaagtgcttacttgcataggaaactaaattttagtcagcaattaagaatcaattcctcaagaaaacaattgatgatacacccatctatttagatatacggcttatatagctttttttaagtaaaattgttaattgctaaagctatcctaaaagttgaaatttgtggaacgtatacattacattggagtgtctaacgaacaaaatggaagaagtaaatcatgttttcgaattttcttcacatcatatgtaccttcagtacaaaaggatggtatatgttcgtatggggatttatgtttggttatttccacaattctatatcacccttcaaacaagttccttgcaataaaattgctgtaggtgaggaaaagactttcagatttcatattggctgcattccagcgctcccctgacatcattgcactgctaaaggtactgggtatacatataactagacatgcatatacatgtcaattctctgaaccaatataccatgtttgtagcatttctttttctgagagtgaatgttgtagcatatttaagcaacaaagtaaaaatctcctttttctggttccactaaaaagtaagcactataatgctcaaaccattctacagaagcccattacagacagactaggggaggctcacgataatcctgcaaacgcaagaacatgtcttaagtacatactgattatataactgcaccaaactgctaaataccacccgctctcttatactagttctgattatcttaaatgattaatactcttctccacatcaactgagttttctgatcgaatgtgatttatttacacagactgaattagcattgcatttgtgttgggccattggtgagcatggagctggaggaaaaaatcgcaaagatgtagctcgtgaactgtttgaaaatttggagttgctgttatatgaaaatctggctaccaggtgggccctgttaaaccagtcttttttttctaaacttgcatggcatctcttttgactgacctcttatctcttgttgtgaagtcgtttgggattaagtcaggacacaggatttgatcctatgggtgcatcttctagaaaatcatctcaagctaggctcctctgctttgtggtgactgccatagcaaagctagcaacgttccataatgagttgcttccaagagcacgtgtatcattggccaaggtaggccctaatccttccagtttgaggaatattaaggtttgatatattactgtcaccactcattttcatcgtttgagcttgtaacttactttcgtacaggtcgctcgttcccgaacctcggacaggagagtgtggcaacgtgcttgtgactatttaggtctattgaatgaaccggccatttgtttatctgtactaggaccatccaccgcacaaggaaatggtcctggtattgtcaactggagtgaaggaggaacaaagatggtagctcacattccgttctacctgttagctgaacaaaaaggtaaaaaactcttttagcaaacttatattgttaaatgtggagtaagcatcctttcatgtttgttaccgcacaaacatgtttgctaggaacaaactccatatgtaagtgatatatttaagaatcaagttgttttgaaaaatgccatcctgagaaaactattaaaatgtgtttccgttaataagccttttgtaaaatgaacacacgagttactccagaactcaacttgttttgcaggtgcaccgatccatgatttttcgtttgacgatctcgtccccacggaatgatgtactttcatgagtgcaatggattcatacaatgattccctcgcggacatcatctgtgctgactgccgaggcttttggtggtaatgtcatgaatcatgaagatccaagtggcgtctcttatgagtttatccagttcattattcagtctaaaggcgagctaagttgctttggatgagaccgtatagtttctgggaactgaaatgtttgttcatggggtgaaggttatggcagaagcactcgagtatttccatgtagggattgtcgtatatatgtaatcttttgaagggtaatcagtgatgtaaataataagagtggcataaattttatcaaggagtattaaattgattgtgctgttttttgggggatatgcgacagttctgatagaatactgttgaaggc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0626900, RefSeq:Os04g0626900