Os04g0630600

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Revision as of 11:30, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0630600| Description = NAD-dependent epimerase/dehydratase family protein| Version = NM_001060510.2 GI:297603403 GeneID:4337098| Length = 2...")
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Gene Name

Os04g0630600

Description

NAD-dependent epimerase/dehydratase family protein

Version

NM_001060510.2 GI:297603403 GeneID:4337098

Length

2981 bp

Definition

Oryza sativa Japonica Group Os04g0630600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:32477090..32480070

Sequence Coding Region

32477090..32477212,32477501..32477719,32477973..32478173,32479038..32479197,32479607..32479844
,32479974..32480070

Expression

GEO Profiles:Os04g0630600

Genome Context

<gbrowseImage1> name=NC_008397:32477090..32480070 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:32477090..32480070 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcggcggttgagaggaagacggcgtgcgtcaccggcggcaacggctacatcgcatctgcgctcatcaagatatgctgttggagaagggatatgctgtcaagacgacggtcagaaaccccgagttcagtttcacctctcaaagattctactaattgctgcgatttgtattcagatgacatggcgaagaactcccatctcaaggacttgcaggcacttgaccccttgaaggtgttccgtgctgacatcggcgaagaaggcagcttggacgatgccgtcgccggctgcgactacgccttcctcgtcgctgctccgatgaacttcaattcagagaatcctgagaaagatttggttgaagccgccgtcaatggaacgctcaacgcgatgagatcgtgcgcgaaggcggggacggtgaagcgcgtgatcataacatcgtcggacgcagcgatctccagaaggccgctgcaaggcgacgggcatgtgctggacgaggaatcctggtctgacgttgactacctgagaacggagaagccgctagcctgggcgtactgtgtctccaaggtgcttttggagaaggcagcatgcaagttcgcggaggagaacaacatgagcctcgtcaccgtattcccggtgttcaccttgggcgcagcgccggcgccggtggcgaggacgagcgtccccggcatcctctccctgctatccggtgatgagacgcatctcgaagtcctgaagcccctgcaatcgttcaccggctacgtgtcgatcgttcacgtcgacgacctctgccgcgccgagatattcctcgccgagaaggagtcatcgtcattgtcgtcggcagagtcgtcggcgaggtacatctgctgcagcttcaacaccaccgtcttggcgcttgcccgtttcatggccggaaggtacccgcagtacaacgtcaaaaccgaccgtctgctgttcgtcggagaagctgatcagggaagggttcgaccgttcgagttcaagtacacgaatttgggcgacatacttgatgaccttgtggagtaa</cdnaseq>

Protein Sequence

<aaseq>MSAVERKTACVTGGNGYIASALIKICCWRRDMLSRRRSETPSSV SPLKDSTNCCDLYSDDMAKNSHLKDLQALDPLKVFRADIGEEGSLDDAVAGCDYAFLV AAPMNFNSENPEKDLVEAAVNGTLNAMRSCAKAGTVKRVIITSSDAAISRRPLQGDGH VLDEESWSDVDYLRTEKPLAWAYCVSKVLLEKAACKFAEENNMSLVTVFPVFTLGAAP APVARTSVPGILSLLSGDETHLEVLKPLQSFTGYVSIVHVDDLCRAEIFLAEKESSSL SSAESSARYICCSFNTTVLALARFMAGRYPQYNVKTDRLLFVGEADQGRVRPFEFKYT NLGDILDDLVE</aaseq>

Gene Sequence

<dnaseqindica>1..123#412..630#884..1084#1949..2108#2518..2755#2885..2981#atgtcggcggttgagaggaagacggcgtgcgtcaccggcggcaacggctacatcgcatctgcgctcatcaagatatgctgttggagaagggatatgctgtcaagacgacggtcagaaaccccggtgaggttctcctcctcattttttcactctctaagttcatgttttttgcagtgtttcttccattcagttcaggtgtgaaatcataggccagctagtaccatatgagctttttagcgagtgttttcgcttaaccaattagcaaatggcaggcttagccgcacatgaggacaaaatcttatccttttccaacttccaactgatagttacatatatacatatcgtgacatatgatggatcgaattattatgagactttatatgatctcaaaaagatggtgtgaattttcagagttcagtttcacctctcaaagattctactaattgctgcgatttgtattcagatgacatggcgaagaactcccatctcaaggacttgcaggcacttgaccccttgaaggtgttccgtgctgacatcggcgaagaaggcagcttggacgatgccgtcgccggctgcgactacgccttcctcgtcgctgctccgatgaacttcaattcagagaatcctgaggtgaaaagcttacacccttcgtcttaaaaaaaaaaaaaactaatattacctacaaacctgaaaacatgtgtctatctaagattgtatataggaatttatttttttttacaaggtagtacttggcaccactaattaagatccctactgactacgagatagctagttttcgtccgtttccaatccatgttcatccaactttgatgtgctctactgctctccatttcgtttttttttccgacgttgatggtggcagaaagatttggttgaagccgccgtcaatggaacgctcaacgcgatgagatcgtgcgcgaaggcggggacggtgaagcgcgtgatcataacatcgtcggacgcagcgatctccagaaggccgctgcaaggcgacgggcatgtgctggacgaggaatcctggtctgacgttgactacctgagaacggagaagccgctagcctgggtgacgttcctctcttgacattttcacatctccatcttatccataaatttaagaaaacttttacagtattatactgacagtacaaataatcgaaaaaaatattattttttcctcctgcttcaatataatatagtataaaattaaaggggataaaattgtctttttatactattggtggagggtaattctgtaaactcataatttatagtgaaatactcccaccgtctaaaaaaccatatgtcacattctagcactccctcagtattttaatgtgtgacgccgttaacttttttatcaacgtttaaccattcgttttattcaaaatttttgtgcaaatacaaaaatatctatgtcatgcttaaagaacattagatgataaatcaagtcacaataaaataaatgataaatacatttttttaataagatgaatggtcaaatgttagtcaaaaagtcaaccgcgtcataaattaaaatacggagagagtacgaggttgtgttttttttaggacggagggagtagagataggcattattttcaccaccatgaggtgccgcgccgctgcaaactagcacaatggatgaaaattattaaaataccattgttaatttaataaaaattcttaaaatactcagtatattgtatagaaaagttctctaaatttagggcctgtttagattgtaacaaaaataaaccttaccaagttttggcaatgttaaaattttggcaagatgctaatattatcaaaattttggcaggatttcttatatattgactaaatttagcaataaactaaacatagactttttttataagtttaccaaaaataaatattgtatggttgaaaatggcgtttgcgtttgcaggcgtactgtgtctccaaggtgcttttggagaaggcagcatgcaagttcgcggaggagaacaacatgagcctcgtcaccgtattcccggtgttcaccttgggcgcagcgccggcgccggtggcgaggacgagcgtccccggcatcctctccctgctatccggtgagttagaagcaccagcaccagcgatcaaatcaacaagctagctcccaccaaagtctcaacacttgcaggtggttcttagatcccaccttaaaaatttacaccccgtcacatcgaatatttgaacagctatataaaatattaaatataggctagaaaataactaattacaagattacgactaatttgtgagacgaatctggtattacagtaaacattcgctaatgataaattaattaggcttaataaattcatctcgcggtttattagcgatgctgtaattagttttttattaatgccccaacaactcttacgacaccctatataatatccgatgttacacgccaaaactttaccgcgtctctgaatataaacacacctaagttggcttctgtttattacttctcaggtgatgagacgcatctcgaagtcctgaagcccctgcaatcgttcaccggctacgtgtcgatcgttcacgtcgacgacctctgccgcgccgagatattcctcgccgagaaggagtcatcgtcattgtcgtcggcagagtcgtcggcgaggtacatctgctgcagcttcaacaccaccgtcttggcgcttgcccgtttcatggccggaaggtacccgcagtacaacgtcaaaaccgaccggtacgatcgaattgttggccaacttcgaaatccaacatagatatacatgcatgctgtgttcgatctgacgagcgagtgatgatctctgttatctttgcagcttcgacgggatgcctgagaaaccgagagtctgctgttcgtcggagaagctgatcagggaagggttcgaccgttcgagttcaagtacacgaatttgggcgacatacttgatgaccttgtggagtaa</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0630600, RefSeq:Os04g0630600